Wall clock time and date at job start Fri Apr 10 2020 22:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38936 * 119.67879 * 2 1 4 4 C 1.36437 * 120.61926 * 179.97438 * 3 2 1 5 5 C 1.40099 * 119.82822 * 0.02562 * 4 3 2 6 6 C 1.41586 * 133.37959 * 180.02562 * 5 4 3 7 7 C 1.35868 * 107.72757 * 179.97438 * 6 5 4 8 8 C 1.47060 * 125.42862 * 179.97438 * 7 6 5 9 9 O 1.21646 * 120.00245 * 11.33771 * 8 7 6 10 10 N 1.34773 * 119.99833 * 191.33324 * 8 7 6 11 11 C 1.46501 * 120.00349 * 359.52379 * 10 8 7 12 12 C 1.46503 * 120.00036 * 179.52190 * 10 8 7 13 13 C 1.53500 * 114.20512 * 120.00117 * 12 10 8 14 14 N 1.47070 * 87.98605 * 87.71656 * 13 12 10 15 15 C 1.36930 * 136.05687 * 207.08153 * 14 13 12 16 16 H 1.07995 * 120.00422 * 8.58573 * 15 14 13 17 17 C 1.38811 * 119.99736 * 188.57926 * 15 14 13 18 18 N 1.31619 * 119.99852 * 191.89103 * 17 15 14 19 19 Si 1.86801 * 120.00378 * 11.89666 * 17 15 14 20 20 H 1.48498 * 109.47165 * 270.00149 * 19 17 15 21 21 H 1.48506 * 109.46713 * 29.99300 * 19 17 15 22 22 H 1.48499 * 109.47332 * 149.99339 * 19 17 15 23 23 C 1.47067 * 87.88349 * 27.34176 * 14 13 12 24 24 N 1.38145 * 109.14018 * 0.24920 * 7 6 5 25 25 H 0.96996 * 125.60673 * 179.75460 * 24 7 6 26 26 C 1.37479 * 108.78667 * 359.59450 * 24 7 6 27 27 C 1.37668 * 119.67242 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47490 * 269.98548 * 1 2 3 29 29 H 1.09008 * 109.46600 * 29.98242 * 1 2 3 30 30 H 1.09000 * 109.47423 * 149.97492 * 1 2 3 31 31 H 1.07999 * 119.69116 * 0.02562 * 3 2 1 32 32 H 1.08007 * 120.08748 * 180.02562 * 4 3 2 33 33 H 1.08002 * 126.13686 * 0.04234 * 6 5 4 34 34 H 1.09002 * 109.47455 * 276.24023 * 11 10 8 35 35 H 1.09006 * 109.46969 * 36.23375 * 11 10 8 36 36 H 1.09000 * 109.47725 * 156.23249 * 11 10 8 37 37 H 1.08997 * 113.28186 * 346.93786 * 12 10 8 38 38 H 1.09003 * 113.46708 * 332.93582 * 13 12 10 39 39 H 1.08998 * 113.46766 * 202.49637 * 13 12 10 40 40 H 0.96999 * 120.00262 * 354.92334 * 18 17 15 41 41 H 1.09006 * 113.46791 * 87.43392 * 23 14 13 42 42 H 1.08994 * 113.47006 * 217.87520 * 23 14 13 43 43 H 1.07997 * 120.10175 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2071 0.0000 4 6 3.5591 1.2295 0.0005 5 6 4.2758 0.0257 0.0005 6 6 5.6575 -0.2834 0.0014 7 6 5.7787 -1.6367 0.0015 8 6 7.0482 -2.3789 0.0018 9 8 8.0946 -1.7942 0.2091 10 7 7.0524 -3.7070 -0.2275 11 6 5.7913 -4.4130 -0.4668 12 6 8.3181 -4.4446 -0.2376 13 6 8.4047 -5.5604 0.8130 14 7 7.7848 -6.4624 -0.1693 15 6 7.0126 -7.5921 -0.1207 16 1 6.6133 -7.9332 0.8230 17 6 6.7428 -8.2990 -1.2845 18 7 5.8212 -9.2387 -1.2851 19 14 7.6878 -7.9167 -2.8499 20 1 6.9710 -6.8664 -3.6168 21 1 9.0481 -7.4335 -2.5013 22 1 7.7957 -9.1461 -3.6758 23 6 8.3649 -5.6209 -1.2268 24 7 4.5192 -2.2042 -0.0050 25 1 4.3283 -3.1552 -0.0097 26 6 3.5808 -1.1995 -0.0001 27 6 2.1885 -1.1962 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6447 2.1364 0.0004 32 1 4.0851 2.1728 0.0009 33 1 6.4695 0.4287 0.0030 34 1 5.3294 -4.6656 0.4877 35 1 5.1188 -3.7724 -1.0375 36 1 5.9870 -5.3263 -1.0287 37 1 9.1940 -3.7969 -0.2749 38 1 7.7828 -5.3801 1.6899 39 1 9.4274 -5.8358 1.0704 40 1 5.3825 -9.4883 -0.4568 41 1 9.3772 -5.9122 -1.5071 42 1 7.7091 -5.4922 -2.0878 43 1 1.6448 -2.1293 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043494378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:53 Heat of formation + Delta-G solvation = 97.135846 kcal Electronic energy + Delta-G solvation = -25750.589734 eV Core-core repulsion = 22184.797849 eV Total energy + Delta-G solvation = -3565.791886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.81644 -41.32639 -39.59368 -38.18796 -36.01761 -34.50843 -33.56451 -31.67959 -30.76513 -29.97994 -28.22695 -27.49924 -27.01180 -25.17937 -23.89207 -22.70476 -21.95062 -21.42619 -20.56873 -19.51717 -18.60114 -18.26038 -17.50253 -17.01134 -16.75754 -16.47036 -15.86375 -15.80468 -15.47926 -15.39550 -15.18177 -15.02363 -14.69341 -14.36605 -14.28169 -14.10899 -13.66499 -13.54768 -13.32284 -13.01940 -12.86458 -12.71576 -12.56950 -12.39702 -12.12259 -12.03667 -11.79535 -11.45199 -11.39179 -11.27476 -10.88533 -10.83175 -9.83187 -9.26135 -9.18913 -8.72779 -8.59435 -5.47772 -0.27937 0.65703 1.00310 1.40000 1.49179 1.62847 1.64252 1.97297 2.17108 2.52130 2.89882 2.92746 3.18428 3.27982 3.53140 3.70125 3.87213 3.99928 4.12837 4.13535 4.27723 4.28812 4.32318 4.38948 4.47301 4.58650 4.59695 4.68146 4.69726 4.73904 4.84917 4.89771 4.94533 4.96955 5.01085 5.15792 5.28184 5.34545 5.54851 5.56836 5.66857 5.74275 5.94818 6.12397 6.18595 6.33359 6.69373 6.84460 7.31106 8.25278 8.91176 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017569 B = 0.003588 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.293558 B = 7802.920013 C = 8862.715663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.054 4.054 3 C -0.149 4.149 4 C -0.062 4.062 5 C -0.146 4.146 6 C -0.107 4.107 7 C -0.001 4.001 8 C 0.585 3.415 9 O -0.554 6.554 10 N -0.579 5.579 11 C 0.068 3.932 12 C 0.113 3.887 13 C 0.107 3.893 14 N -0.646 5.646 15 C -0.281 4.281 16 H 0.050 0.950 17 C -0.075 4.075 18 N -0.969 5.969 19 Si 1.091 2.909 20 H -0.279 1.279 21 H -0.248 1.248 22 H -0.309 1.309 23 C 0.090 3.910 24 N -0.582 5.582 25 H 0.428 0.572 26 C 0.099 3.901 27 C -0.153 4.153 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.247 0.753 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 22.263 1.366 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.055 4.055 3 C -0.168 4.168 4 C -0.081 4.081 5 C -0.150 4.150 6 C -0.134 4.134 7 C -0.110 4.110 8 C 0.375 3.625 9 O -0.433 6.433 10 N -0.309 5.309 11 C -0.075 4.075 12 C 0.008 3.992 13 C -0.019 4.019 14 N -0.375 5.375 15 C -0.408 4.408 16 H 0.068 0.932 17 C -0.268 4.268 18 N -0.614 5.614 19 Si 0.918 3.082 20 H -0.206 1.206 21 H -0.172 1.172 22 H -0.237 1.237 23 C -0.035 4.035 24 N -0.196 5.196 25 H 0.276 0.724 26 C -0.012 4.012 27 C -0.174 4.174 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.180 0.820 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.146 0.854 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.057 0.943 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.584 21.757 -0.083 22.732 hybrid contribution -0.196 -1.244 1.950 2.322 sum -6.780 20.513 1.867 21.685 Atomic orbital electron populations 1.20866 0.88819 1.03908 1.03318 1.20035 0.97390 0.91841 0.96262 1.20894 0.93718 0.98447 1.03756 1.20699 0.94294 0.96286 0.96790 1.18452 0.92705 0.93938 1.09925 1.21059 0.96222 0.92761 1.03370 1.19921 0.83981 0.93559 1.13529 1.17445 0.87547 0.80997 0.76522 1.90777 1.32534 1.68650 1.51353 1.47315 1.07954 1.06637 1.69025 1.22207 0.84831 0.98736 1.01747 1.22443 0.86685 0.92265 0.97783 1.22983 0.97419 0.87793 0.93715 1.46362 1.57487 1.29592 1.04014 1.19889 1.23388 1.01871 0.95651 0.93247 1.26857 0.99826 0.95863 1.04274 1.71009 1.26751 1.35269 1.28402 0.83482 0.76979 0.75075 0.72687 1.20588 1.17223 1.23709 1.23342 0.98499 0.88227 0.93469 1.43301 1.03746 1.09192 1.63333 0.72401 1.18763 0.91707 0.88067 1.02647 1.20192 0.89234 0.99727 1.08212 0.90048 0.89742 0.91114 0.83077 0.83625 0.82042 0.92246 0.89807 0.89448 0.85350 0.94019 0.91202 0.94331 0.90246 0.93029 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.99 71.24 0.71 -0.50 16 2 C -0.05 -0.91 5.88 -19.83 -0.12 -1.02 16 3 C -0.15 -2.37 9.61 22.02 0.21 -2.16 16 4 C -0.06 -1.17 10.06 22.30 0.22 -0.94 16 5 C -0.15 -3.59 6.16 -21.36 -0.13 -3.72 16 6 C -0.11 -2.86 10.55 22.55 0.24 -2.63 16 7 C 0.00 -0.02 6.58 39.91 0.26 0.24 16 8 C 0.58 19.28 7.65 86.56 0.66 19.95 16 9 O -0.55 -20.40 16.37 -4.18 -0.07 -20.47 16 10 N -0.58 -19.10 3.12 -825.66 -2.57 -21.68 16 11 C 0.07 2.19 8.07 127.77 1.03 3.22 16 12 C 0.11 3.79 4.67 45.55 0.21 4.00 16 13 C 0.11 3.93 8.31 83.18 0.69 4.62 16 14 N -0.65 -28.56 2.32 -737.98 -1.71 -30.27 16 15 C -0.28 -15.11 10.47 84.03 0.88 -14.23 16 16 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 17 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 18 N -0.97 -59.78 13.70 21.65 0.30 -59.49 16 19 Si 1.09 50.29 25.50 68.60 1.75 52.04 16 20 H -0.28 -12.08 7.03 99.48 0.70 -11.38 16 21 H -0.25 -10.04 5.38 99.48 0.54 -9.51 16 22 H -0.31 -14.89 7.11 99.48 0.71 -14.18 16 23 C 0.09 3.36 4.60 83.27 0.38 3.74 16 24 N -0.58 -15.36 5.10 -177.18 -0.90 -16.26 16 25 H 0.43 10.51 4.85 -92.71 -0.45 10.06 16 26 C 0.10 2.48 7.25 39.14 0.28 2.76 16 27 C -0.15 -3.19 9.71 22.37 0.22 -2.97 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.65 8.08 -2.38 -0.02 0.63 16 30 H 0.07 0.72 8.08 -2.39 -0.02 0.71 16 31 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 34 H 0.06 1.88 7.68 -2.39 -0.02 1.86 16 35 H 0.08 2.31 5.19 -2.38 -0.01 2.30 16 36 H 0.09 3.43 5.05 -2.39 -0.01 3.41 16 37 H 0.13 3.93 7.29 -2.39 -0.02 3.91 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.25 15.36 8.73 -92.71 -0.81 14.56 16 41 H 0.08 2.76 6.94 -2.38 -0.02 2.74 16 42 H 0.05 1.99 5.38 -2.39 -0.01 1.97 16 43 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -68.69 342.67 3.39 -65.30 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.38 Total: 24.23 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.23 Total: 6.59 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -4.89 Total: -127.70 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.07 Total: -20.47 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 1.75 Total: 52.04 kcal Total: -68.69 3.39 -65.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043494378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.437 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds