Wall clock time and date at job start Fri Apr 10 2020 22:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38942 * 119.69273 * 2 1 4 4 C 1.37669 * 120.64754 * 180.02562 * 3 2 1 5 5 C 1.39220 * 119.81060 * 0.03456 * 4 3 2 6 6 N 1.37483 * 133.18060 * 179.97438 * 5 4 3 7 7 H 0.96996 * 125.60263 * 0.02562 * 6 5 4 8 8 C 1.38150 * 108.78774 * 179.97438 * 6 5 4 9 9 C 1.47059 * 125.42680 * 180.02562 * 8 6 5 10 10 O 1.21650 * 119.99724 * 191.07347 * 9 8 6 11 11 N 1.34777 * 120.00344 * 11.06457 * 9 8 6 12 12 C 1.46504 * 119.99973 * 359.57370 * 11 9 8 13 13 C 1.46500 * 120.00350 * 179.57070 * 11 9 8 14 14 C 1.53492 * 114.20654 * 120.00229 * 13 11 9 15 15 N 1.47065 * 87.98785 * 87.71993 * 14 13 11 16 16 C 1.36935 * 136.05745 * 207.08525 * 15 14 13 17 17 H 1.07996 * 120.00522 * 8.54502 * 16 15 14 18 18 C 1.38813 * 119.99951 * 188.53764 * 16 15 14 19 19 N 1.31614 * 120.00380 * 191.94886 * 18 16 15 20 20 Si 1.86807 * 119.99848 * 11.94830 * 18 16 15 21 21 H 1.48494 * 109.47032 * 269.99899 * 20 18 16 22 22 H 1.48502 * 109.47081 * 30.00161 * 20 18 16 23 23 H 1.48504 * 109.46900 * 150.00079 * 20 18 16 24 24 C 1.47067 * 87.88302 * 27.34190 * 15 14 13 25 25 C 1.35862 * 109.14045 * 0.26231 * 8 6 5 26 26 C 1.40853 * 119.43223 * 359.96048 * 5 4 3 27 27 C 1.36436 * 119.69135 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47578 * 269.98329 * 1 2 3 29 29 H 1.08998 * 109.46853 * 29.98357 * 1 2 3 30 30 H 1.09009 * 109.47105 * 149.98200 * 1 2 3 31 31 H 1.07994 * 119.67283 * 0.03667 * 3 2 1 32 32 H 1.08003 * 120.08819 * 179.97438 * 4 3 2 33 33 H 1.09005 * 109.46843 * 276.22716 * 12 11 9 34 34 H 1.09005 * 109.47200 * 36.22656 * 12 11 9 35 35 H 1.08999 * 109.47278 * 156.22551 * 12 11 9 36 36 H 1.09004 * 113.28065 * 346.93552 * 13 11 9 37 37 H 1.09005 * 113.46881 * 332.93754 * 14 13 11 38 38 H 1.09008 * 113.46614 * 202.50043 * 14 13 11 39 39 H 0.97000 * 119.99893 * 354.92434 * 19 18 16 40 40 H 1.09003 * 113.46954 * 87.44099 * 24 15 14 41 41 H 1.09003 * 113.46609 * 217.87797 * 24 15 14 42 42 H 1.07997 * 126.13811 * 179.71529 * 25 8 6 43 43 H 1.08003 * 120.08554 * 359.96591 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2070 0.0000 4 6 3.5718 1.2299 -0.0005 5 6 4.2839 0.0337 -0.0018 6 7 5.6266 -0.2619 -0.0030 7 1 6.3476 0.3869 -0.0029 8 6 5.7799 -1.6349 -0.0034 9 6 7.0655 -2.3491 -0.0041 10 8 7.0949 -3.5482 -0.2067 11 7 8.2110 -1.6751 0.2196 12 6 8.1764 -0.2294 0.4541 13 6 9.4907 -2.3881 0.2282 14 6 10.4916 -1.8975 -0.8270 15 7 10.9548 -0.9013 0.1506 16 6 11.5332 0.3387 0.0961 17 1 11.6208 0.8527 -0.8497 18 6 12.0066 0.9353 1.2566 19 7 12.3444 2.2074 1.2522 20 14 12.1644 -0.0674 2.8249 21 1 10.8976 0.0157 3.5951 22 1 12.4422 -1.4849 2.4802 23 1 13.2791 0.4700 3.6459 24 6 10.5295 -1.8257 1.2124 25 6 4.5538 -2.2201 -0.0083 26 6 3.5838 -1.1886 -0.0017 27 6 2.1828 -1.1852 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8899 -0.5142 31 1 1.6450 2.1362 0.0006 32 1 4.0976 2.1733 -0.0009 33 1 8.1556 0.2934 -0.5022 34 1 7.2842 0.0247 1.0265 35 1 9.0636 0.0695 1.0124 36 1 9.3799 -3.4717 0.2694 37 1 10.0170 -1.4572 -1.7040 38 1 11.2491 -2.6381 -1.0843 39 1 12.3327 2.7093 0.4222 40 1 11.2969 -2.5472 1.4929 41 1 10.0871 -1.3241 2.0731 42 1 4.3547 -3.2815 -0.0140 43 1 1.6392 -2.1184 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043505090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:57 Heat of formation + Delta-G solvation = 115.466901 kcal Electronic energy + Delta-G solvation = -25709.147926 eV Core-core repulsion = 22144.150934 eV Total energy + Delta-G solvation = -3564.996991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79322 -39.96784 -38.20859 -37.26193 -34.58968 -32.50986 -32.38605 -31.45422 -29.16094 -28.51881 -26.69846 -26.54077 -25.42259 -24.26011 -22.45399 -21.57113 -20.98945 -20.06197 -19.08891 -17.72565 -17.55189 -17.24024 -16.18295 -15.64563 -15.32770 -15.16906 -14.64727 -14.46125 -14.21291 -14.03498 -13.87731 -13.79770 -13.53898 -13.32371 -13.04788 -12.96750 -12.78638 -12.33491 -12.11415 -11.79827 -11.57923 -11.48672 -11.21316 -10.98104 -10.97159 -10.69969 -10.34532 -10.01150 -9.97823 -9.70451 -9.31831 -8.89833 -8.45502 -8.19959 -7.82118 -7.32766 -6.42991 -3.38841 0.69705 1.47305 2.06650 2.81520 3.09533 3.29576 3.35644 3.38047 3.51469 3.74183 4.41283 4.45382 4.54537 4.64553 4.76020 4.92384 4.99966 5.06603 5.13873 5.23707 5.27040 5.27831 5.43616 5.52020 5.54987 5.62510 5.68375 5.71995 5.79058 5.89880 5.92871 6.07069 6.11615 6.17026 6.24785 6.27893 6.41042 6.47998 6.53924 6.59824 6.83293 6.95946 6.99427 7.29955 7.50644 8.10266 8.15642 8.83252 9.34809 10.21943 11.05820 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.003391 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.781858 B = 8254.625304 C = 9092.117178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.126 4.126 5 C 0.101 3.899 6 N -0.581 5.581 7 H 0.427 0.573 8 C 0.030 3.970 9 C 0.580 3.420 10 O -0.530 6.530 11 N -0.575 5.575 12 C 0.057 3.943 13 C 0.097 3.903 14 C 0.106 3.894 15 N -0.624 5.624 16 C -0.305 4.305 17 H 0.082 0.918 18 C -0.022 4.022 19 N -0.930 5.930 20 Si 1.057 2.943 21 H -0.294 1.294 22 H -0.278 1.278 23 H -0.294 1.294 24 C 0.092 3.908 25 C -0.117 4.117 26 C -0.114 4.114 27 C -0.064 4.064 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.262 0.738 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.154 0.846 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.319 -4.727 -1.697 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.110 4.110 4 C -0.147 4.147 5 C -0.009 4.009 6 N -0.194 5.194 7 H 0.275 0.725 8 C -0.080 4.080 9 C 0.368 3.632 10 O -0.407 6.407 11 N -0.305 5.305 12 C -0.086 4.086 13 C -0.008 4.008 14 C -0.021 4.021 15 N -0.353 5.353 16 C -0.432 4.432 17 H 0.100 0.900 18 C -0.222 4.222 19 N -0.572 5.572 20 Si 0.889 3.111 21 H -0.222 1.222 22 H -0.205 1.205 23 H -0.222 1.222 24 C -0.034 4.034 25 C -0.143 4.143 26 C -0.119 4.119 27 C -0.083 4.083 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.172 0.828 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.560 -4.916 -0.227 20.170 hybrid contribution 0.335 0.437 -1.675 1.763 sum -19.225 -4.480 -1.902 19.831 Atomic orbital electron populations 1.20712 0.91227 1.02469 1.02017 1.19348 0.95965 0.92839 1.03975 1.20728 0.92829 0.97578 0.99874 1.20084 0.93847 0.94999 1.05724 1.18463 0.83631 0.95568 1.03273 1.43429 1.06523 1.06593 1.62847 0.72457 1.20165 0.95114 0.82360 1.10391 1.17274 0.81994 0.86469 0.77435 1.90805 1.86288 1.13494 1.50158 1.47269 1.05592 1.08767 1.68899 1.22341 1.04557 0.79757 1.01904 1.22596 0.82276 0.96148 0.99744 1.22819 0.93559 0.91650 0.94088 1.46441 1.73617 1.13863 1.01342 1.20148 1.36937 0.88831 0.97243 0.90001 1.25762 0.97686 0.97483 1.01248 1.70904 1.51005 1.06273 1.28996 0.83876 0.76540 0.75116 0.75602 1.22150 1.20472 1.22179 1.23169 0.93667 0.92825 0.93762 1.20833 0.89131 0.99211 1.05170 1.18189 0.93541 0.92290 1.07856 1.20224 0.91462 0.97761 0.98822 0.91573 0.91830 0.91799 0.85704 0.85906 0.92217 0.91998 0.86335 0.87167 0.93415 0.93300 0.92770 0.91985 0.92717 0.82809 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.99 36.01 0.36 -0.38 16 2 C -0.12 -1.17 5.84 -105.01 -0.61 -1.78 16 3 C -0.09 -0.88 9.66 -39.53 -0.38 -1.26 16 4 C -0.13 -1.38 10.08 -39.42 -0.40 -1.77 16 5 C 0.10 1.31 7.25 -83.98 -0.61 0.70 16 6 N -0.58 -7.73 5.10 -7.36 -0.04 -7.77 16 7 H 0.43 5.22 4.85 -40.82 -0.20 5.02 16 8 C 0.03 0.44 6.58 -82.29 -0.54 -0.10 16 9 C 0.58 9.76 7.65 -12.68 -0.10 9.66 16 10 O -0.53 -10.01 16.37 5.23 0.09 -9.92 16 11 N -0.57 -9.70 3.12 -174.95 -0.55 -10.24 16 12 C 0.06 0.92 8.07 59.85 0.48 1.40 16 13 C 0.10 1.71 4.67 -67.68 -0.32 1.39 16 14 C 0.11 2.01 8.31 -8.52 -0.07 1.94 16 15 N -0.62 -13.99 2.32 -184.63 -0.43 -14.41 16 16 C -0.31 -8.06 10.47 -15.06 -0.16 -8.22 16 17 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 18 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 19 N -0.93 -27.72 13.70 55.49 0.76 -26.96 16 20 Si 1.06 25.04 25.50 -169.99 -4.33 20.70 16 21 H -0.29 -6.65 7.03 56.52 0.40 -6.25 16 22 H -0.28 -6.10 5.39 56.52 0.30 -5.79 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 C 0.09 1.81 4.60 -8.38 -0.04 1.77 16 25 C -0.12 -1.62 10.55 -39.16 -0.41 -2.03 16 26 C -0.11 -1.49 6.16 -106.93 -0.66 -2.15 16 27 C -0.06 -0.70 9.68 -39.53 -0.38 -1.08 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.06 0.39 8.07 -51.92 -0.42 -0.03 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 34 H 0.06 0.85 5.19 -51.93 -0.27 0.58 16 35 H 0.12 2.31 5.05 -51.93 -0.26 2.04 16 36 H 0.11 1.83 7.29 -51.93 -0.38 1.45 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.26 7.73 8.73 -40.82 -0.36 7.38 16 40 H 0.06 1.19 6.94 -51.93 -0.36 0.83 16 41 H 0.05 1.10 5.38 -51.93 -0.28 0.82 16 42 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 43 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -31.25 342.67 -8.89 -40.14 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.62 Total: 5.90 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -3.93 Total: -2.60 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.25 Total: -59.38 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -4.33 Total: 20.70 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.25 -8.89 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043505090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.604 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds