Wall clock time and date at job start Fri Apr 10 2020 22:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38942 * 119.69273 * 2 1 4 4 C 1.37669 * 120.64754 * 180.02562 * 3 2 1 5 5 C 1.39220 * 119.81060 * 0.03456 * 4 3 2 6 6 N 1.37483 * 133.18060 * 179.97438 * 5 4 3 7 7 H 0.96996 * 125.60263 * 0.02562 * 6 5 4 8 8 C 1.38150 * 108.78774 * 179.97438 * 6 5 4 9 9 C 1.47059 * 125.42680 * 180.02562 * 8 6 5 10 10 O 1.21650 * 119.99724 * 191.07347 * 9 8 6 11 11 N 1.34777 * 120.00344 * 11.06457 * 9 8 6 12 12 C 1.46504 * 119.99973 * 359.57370 * 11 9 8 13 13 C 1.46500 * 120.00350 * 179.57070 * 11 9 8 14 14 C 1.53492 * 114.20654 * 120.00229 * 13 11 9 15 15 N 1.47065 * 87.98785 * 87.71993 * 14 13 11 16 16 C 1.36935 * 136.05745 * 207.08525 * 15 14 13 17 17 H 1.07996 * 120.00522 * 8.54502 * 16 15 14 18 18 C 1.38813 * 119.99951 * 188.53764 * 16 15 14 19 19 N 1.31614 * 120.00380 * 191.94886 * 18 16 15 20 20 Si 1.86807 * 119.99848 * 11.94830 * 18 16 15 21 21 H 1.48494 * 109.47032 * 269.99899 * 20 18 16 22 22 H 1.48502 * 109.47081 * 30.00161 * 20 18 16 23 23 H 1.48504 * 109.46900 * 150.00079 * 20 18 16 24 24 C 1.47067 * 87.88302 * 27.34190 * 15 14 13 25 25 C 1.35862 * 109.14045 * 0.26231 * 8 6 5 26 26 C 1.40853 * 119.43223 * 359.96048 * 5 4 3 27 27 C 1.36436 * 119.69135 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47578 * 269.98329 * 1 2 3 29 29 H 1.08998 * 109.46853 * 29.98357 * 1 2 3 30 30 H 1.09009 * 109.47105 * 149.98200 * 1 2 3 31 31 H 1.07994 * 119.67283 * 0.03667 * 3 2 1 32 32 H 1.08003 * 120.08819 * 179.97438 * 4 3 2 33 33 H 1.09005 * 109.46843 * 276.22716 * 12 11 9 34 34 H 1.09005 * 109.47200 * 36.22656 * 12 11 9 35 35 H 1.08999 * 109.47278 * 156.22551 * 12 11 9 36 36 H 1.09004 * 113.28065 * 346.93552 * 13 11 9 37 37 H 1.09005 * 113.46881 * 332.93754 * 14 13 11 38 38 H 1.09008 * 113.46614 * 202.50043 * 14 13 11 39 39 H 0.97000 * 119.99893 * 354.92434 * 19 18 16 40 40 H 1.09003 * 113.46954 * 87.44099 * 24 15 14 41 41 H 1.09003 * 113.46609 * 217.87797 * 24 15 14 42 42 H 1.07997 * 126.13811 * 179.71529 * 25 8 6 43 43 H 1.08003 * 120.08554 * 359.96591 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2070 0.0000 4 6 3.5718 1.2299 -0.0005 5 6 4.2839 0.0337 -0.0018 6 7 5.6266 -0.2619 -0.0030 7 1 6.3476 0.3869 -0.0029 8 6 5.7799 -1.6349 -0.0034 9 6 7.0655 -2.3491 -0.0041 10 8 7.0949 -3.5482 -0.2067 11 7 8.2110 -1.6751 0.2196 12 6 8.1764 -0.2294 0.4541 13 6 9.4907 -2.3881 0.2282 14 6 10.4916 -1.8975 -0.8270 15 7 10.9548 -0.9013 0.1506 16 6 11.5332 0.3387 0.0961 17 1 11.6208 0.8527 -0.8497 18 6 12.0066 0.9353 1.2566 19 7 12.3444 2.2074 1.2522 20 14 12.1644 -0.0674 2.8249 21 1 10.8976 0.0157 3.5951 22 1 12.4422 -1.4849 2.4802 23 1 13.2791 0.4700 3.6459 24 6 10.5295 -1.8257 1.2124 25 6 4.5538 -2.2201 -0.0083 26 6 3.5838 -1.1886 -0.0017 27 6 2.1828 -1.1852 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8899 -0.5142 31 1 1.6450 2.1362 0.0006 32 1 4.0976 2.1733 -0.0009 33 1 8.1556 0.2934 -0.5022 34 1 7.2842 0.0247 1.0265 35 1 9.0636 0.0695 1.0124 36 1 9.3799 -3.4717 0.2694 37 1 10.0170 -1.4572 -1.7040 38 1 11.2491 -2.6381 -1.0843 39 1 12.3327 2.7093 0.4222 40 1 11.2969 -2.5472 1.4929 41 1 10.0871 -1.3241 2.0731 42 1 4.3547 -3.2815 -0.0140 43 1 1.6392 -2.1184 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043505090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:57 Heat of formation + Delta-G solvation = 97.208563 kcal Electronic energy + Delta-G solvation = -25709.939667 eV Core-core repulsion = 22144.150934 eV Total energy + Delta-G solvation = -3565.788732 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.81997 -41.32839 -39.59632 -38.20820 -36.00702 -34.49548 -33.27573 -32.35286 -30.34149 -30.01136 -28.06885 -27.44850 -26.98348 -25.47612 -23.88788 -22.59407 -22.16087 -21.16409 -20.57067 -19.51177 -18.58535 -18.53806 -17.60416 -16.96552 -16.75345 -16.09274 -15.87174 -15.78246 -15.46903 -15.38624 -15.18011 -15.13301 -14.68137 -14.35682 -14.27107 -14.11192 -13.83888 -13.54373 -13.32300 -12.99547 -12.86139 -12.71513 -12.49636 -12.39233 -12.07790 -12.00431 -11.78227 -11.45310 -11.39471 -11.27557 -10.92217 -10.87688 -9.84071 -9.26210 -9.12427 -8.74808 -8.59501 -5.47805 -0.27737 0.62500 1.02224 1.40069 1.49267 1.62564 1.64291 1.97475 2.17320 2.52171 2.89074 2.92711 3.18377 3.27253 3.52981 3.69581 3.87367 4.07188 4.07359 4.13329 4.27666 4.27859 4.33076 4.38897 4.49243 4.58867 4.60035 4.68332 4.70436 4.73996 4.82649 4.93654 4.96982 4.98506 5.12979 5.15793 5.22088 5.36196 5.45547 5.60393 5.66582 5.77148 5.94823 6.12066 6.18367 6.33649 6.69358 6.84003 7.31073 8.25225 8.91158 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.003391 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.781858 B = 8254.625304 C = 9092.117178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.140 4.140 5 C 0.088 3.912 6 N -0.581 5.581 7 H 0.428 0.572 8 C 0.003 3.997 9 C 0.585 3.415 10 O -0.554 6.554 11 N -0.579 5.579 12 C 0.068 3.932 13 C 0.113 3.887 14 C 0.107 3.893 15 N -0.646 5.646 16 C -0.280 4.280 17 H 0.050 0.950 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 1.092 2.908 21 H -0.279 1.279 22 H -0.248 1.248 23 H -0.309 1.309 24 C 0.090 3.910 25 C -0.111 4.111 26 C -0.135 4.135 27 C -0.073 4.073 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.154 0.846 32 H 0.138 0.862 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.247 0.753 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.161 0.839 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.062 -5.899 -1.274 23.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.161 4.161 5 C -0.022 4.022 6 N -0.195 5.195 7 H 0.277 0.723 8 C -0.106 4.106 9 C 0.375 3.625 10 O -0.433 6.433 11 N -0.309 5.309 12 C -0.076 4.076 13 C 0.008 3.992 14 C -0.019 4.019 15 N -0.375 5.375 16 C -0.408 4.408 17 H 0.068 0.932 18 C -0.269 4.269 19 N -0.614 5.614 20 Si 0.918 3.082 21 H -0.206 1.206 22 H -0.172 1.172 23 H -0.237 1.237 24 C -0.035 4.035 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.092 4.092 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.171 0.829 32 H 0.155 0.845 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.179 0.821 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.338 -6.128 0.168 23.164 hybrid contribution 0.974 0.822 -1.934 2.316 sum -21.365 -5.306 -1.766 22.084 Atomic orbital electron populations 1.20772 0.88938 1.03622 1.02965 1.19765 0.97672 0.92382 1.02306 1.21166 0.92486 0.98907 0.97726 1.20388 0.94590 0.94974 1.06113 1.18806 0.83373 0.96488 1.03511 1.43296 1.06939 1.05993 1.63225 0.72337 1.19924 0.94429 0.83122 1.13122 1.17447 0.82355 0.86209 0.76533 1.90780 1.86697 1.14454 1.51357 1.47317 1.05570 1.08921 1.69102 1.22214 1.04066 0.79483 1.01789 1.22442 0.81960 0.96988 0.97790 1.22981 0.94197 0.90967 0.93755 1.46370 1.73276 1.13818 1.04021 1.19889 1.34760 0.90453 0.95656 0.93230 1.26863 0.98124 0.97521 1.04364 1.71009 1.54430 1.07722 1.28287 0.83479 0.76572 0.75481 0.72666 1.20557 1.17236 1.23737 1.23343 0.94515 0.92252 0.93433 1.21042 0.89155 0.99840 1.03834 1.18408 0.94533 0.91993 1.08981 1.20516 0.90713 0.99234 0.98691 0.90602 0.90474 0.90970 0.82873 0.84455 0.92189 0.89769 0.89454 0.85355 0.93996 0.91209 0.94328 0.90251 0.93011 0.82146 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.99 71.24 0.71 -0.35 16 2 C -0.12 -1.97 5.84 -20.12 -0.12 -2.09 16 3 C -0.08 -1.36 9.66 22.30 0.22 -1.14 16 4 C -0.14 -2.79 10.08 22.37 0.23 -2.56 16 5 C 0.09 2.19 7.25 39.13 0.28 2.47 16 6 N -0.58 -15.13 5.10 -177.19 -0.90 -16.03 16 7 H 0.43 10.32 4.85 -92.71 -0.45 9.87 16 8 C 0.00 0.10 6.58 39.91 0.26 0.36 16 9 C 0.58 19.21 7.65 86.56 0.66 19.87 16 10 O -0.55 -20.36 16.37 -4.19 -0.07 -20.43 16 11 N -0.58 -19.01 3.12 -825.66 -2.57 -21.58 16 12 C 0.07 2.16 8.07 127.77 1.03 3.19 16 13 C 0.11 3.78 4.67 45.55 0.21 3.99 16 14 C 0.11 3.93 8.31 83.17 0.69 4.62 16 15 N -0.65 -28.52 2.32 -738.05 -1.71 -30.23 16 16 C -0.28 -15.06 10.47 84.03 0.88 -14.18 16 17 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 18 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 19 N -0.97 -59.76 13.70 21.65 0.30 -59.47 16 20 Si 1.09 50.23 25.50 68.60 1.75 51.98 16 21 H -0.28 -12.04 7.03 99.48 0.70 -11.34 16 22 H -0.25 -10.03 5.39 99.48 0.54 -9.50 16 23 H -0.31 -14.89 7.11 99.48 0.71 -14.18 16 24 C 0.09 3.35 4.60 83.26 0.38 3.73 16 25 C -0.11 -3.00 10.55 22.55 0.24 -2.76 16 26 C -0.13 -3.34 6.16 -21.36 -0.13 -3.47 16 27 C -0.07 -1.43 9.68 22.30 0.22 -1.21 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 30 H 0.07 0.63 8.07 -2.38 -0.02 0.61 16 31 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.06 1.88 7.68 -2.38 -0.02 1.86 16 34 H 0.08 2.29 5.19 -2.38 -0.01 2.28 16 35 H 0.09 3.41 5.05 -2.39 -0.01 3.39 16 36 H 0.13 3.92 7.29 -2.38 -0.02 3.90 16 37 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.25 15.35 8.73 -92.71 -0.81 14.55 16 40 H 0.08 2.75 6.94 -2.39 -0.02 2.73 16 41 H 0.05 1.99 5.38 -2.39 -0.01 1.98 16 42 H 0.16 3.93 8.06 -2.91 -0.02 3.90 16 43 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -68.57 342.67 3.40 -65.17 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.38 Total: 23.92 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 6.23 Total: 6.66 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -4.89 Total: -127.31 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.07 Total: -20.43 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 1.75 Total: 51.98 kcal Total: -68.57 3.40 -65.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043505090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.383 kcal (2) G-P(sol) polarization free energy of solvation -68.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds