Wall clock time and date at job start Fri Apr 10 2020 22:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38750 * 119.84641 * 2 1 4 4 C 1.37766 * 120.63597 * 180.02562 * 3 2 1 5 5 C 1.39121 * 119.92590 * 359.97438 * 4 3 2 6 6 N 1.37965 * 133.18891 * 180.02562 * 5 4 3 7 7 H 0.96995 * 124.78320 * 359.95083 * 6 5 4 8 8 C 1.35463 * 110.43021 * 179.97438 * 6 5 4 9 9 C 1.36380 * 109.76964 * 359.97438 * 8 6 5 10 10 C 1.46905 * 126.77063 * 180.02562 * 9 8 6 11 11 O 1.21681 * 120.00148 * 219.06431 * 10 9 8 12 12 N 1.34775 * 120.00011 * 39.06267 * 10 9 8 13 13 C 1.46492 * 120.00056 * 355.35056 * 12 10 9 14 14 C 1.46508 * 119.99750 * 175.34783 * 12 10 9 15 15 C 1.53499 * 114.20291 * 120.00021 * 14 12 10 16 16 N 1.47072 * 87.98557 * 87.71338 * 15 14 12 17 17 C 1.36932 * 136.05989 * 207.07808 * 16 15 14 18 18 H 1.08003 * 119.99996 * 6.71518 * 17 16 15 19 19 C 1.38814 * 119.99968 * 186.70701 * 17 16 15 20 20 N 1.31621 * 120.00005 * 194.43503 * 19 17 16 21 21 Si 1.86800 * 120.00173 * 14.43928 * 19 17 16 22 22 H 1.48503 * 109.46954 * 269.99910 * 21 19 17 23 23 H 1.48501 * 109.46762 * 29.99279 * 21 19 17 24 24 H 1.48498 * 109.47226 * 149.99566 * 21 19 17 25 25 C 1.47076 * 87.88202 * 27.34267 * 16 15 14 26 26 C 1.40393 * 119.36170 * 0.30054 * 5 4 3 27 27 C 1.37746 * 119.84705 * 179.97438 * 2 1 3 28 28 H 1.09010 * 109.46955 * 90.00042 * 1 2 3 29 29 H 1.09000 * 109.47558 * 209.99723 * 1 2 3 30 30 H 1.08998 * 109.47526 * 330.00241 * 1 2 3 31 31 H 1.08004 * 119.68727 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.04006 * 179.97438 * 4 3 2 33 33 H 1.07999 * 125.12243 * 179.97438 * 8 6 5 34 34 H 1.09009 * 109.46847 * 275.17974 * 13 12 10 35 35 H 1.08996 * 109.47466 * 35.17476 * 13 12 10 36 36 H 1.09000 * 109.47354 * 155.18431 * 13 12 10 37 37 H 1.08990 * 113.28162 * 346.93824 * 14 12 10 38 38 H 1.08996 * 113.47015 * 332.94001 * 15 14 12 39 39 H 1.08996 * 113.46864 * 202.49348 * 15 14 12 40 40 H 0.97001 * 120.00124 * 354.94706 * 20 19 17 41 41 H 1.08994 * 113.47261 * 87.43725 * 25 16 15 42 42 H 1.09006 * 113.46149 * 217.87896 * 25 16 15 43 43 H 1.08003 * 120.16947 * 0.02714 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.2035 0.0000 4 6 3.5751 1.2224 -0.0005 5 6 4.2857 0.0264 -0.0005 6 7 5.6328 -0.2716 -0.0005 7 1 6.3451 0.3867 -0.0012 8 6 5.8203 -1.6132 0.0000 9 6 4.6131 -2.2477 0.0010 10 6 4.3821 -3.6985 0.0024 11 8 3.4782 -4.1713 -0.6610 12 7 5.1714 -4.5058 0.7383 13 6 6.3215 -3.9502 1.4558 14 6 4.8792 -5.9391 0.8209 15 6 6.0084 -6.8422 0.3056 16 7 6.5848 -6.8055 1.6582 17 6 7.8361 -6.9284 2.2004 18 1 8.7005 -6.9889 1.5557 19 6 7.9937 -6.9752 3.5788 20 7 9.1858 -6.8074 4.1109 21 14 6.5141 -7.2763 4.6785 22 1 5.8952 -5.9764 5.0426 23 1 5.5218 -8.1115 3.9553 24 1 6.9488 -7.9803 5.9116 25 6 5.2246 -6.5852 2.1727 26 6 3.5854 -1.1904 -0.0064 27 6 2.1926 -1.1947 0.0005 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6499 2.1344 0.0004 32 1 4.1028 2.1647 -0.0009 33 1 6.7811 -2.1063 -0.0002 34 1 7.1775 -3.8955 0.7831 35 1 6.0773 -2.9504 1.8149 36 1 6.5655 -4.5911 2.3030 37 1 3.8908 -6.1997 0.4429 38 1 6.6365 -6.3654 -0.4468 39 1 5.6687 -7.8334 0.0053 40 1 9.9649 -6.7243 3.5391 41 1 4.6782 -7.5086 2.3646 42 1 5.1851 -5.8893 3.0108 43 1 1.6528 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044341411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:01 Heat of formation + Delta-G solvation = 98.812475 kcal Electronic energy + Delta-G solvation = -25883.660504 eV Core-core repulsion = 22317.941323 eV Total energy + Delta-G solvation = -3565.719181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55602 -39.73245 -37.81471 -37.43025 -34.18158 -32.47967 -32.06108 -31.48227 -29.25800 -28.00074 -26.63598 -26.20676 -25.26975 -23.73772 -22.74275 -21.72695 -21.18222 -19.64014 -18.59294 -17.87230 -17.36880 -16.73518 -16.08791 -15.81945 -15.24652 -15.04674 -14.71611 -14.41573 -14.22969 -13.83398 -13.79400 -13.69541 -13.50415 -13.25841 -13.11704 -12.61905 -12.35291 -12.26388 -11.95231 -11.67144 -11.41698 -11.35259 -11.20598 -11.03350 -10.84698 -10.57557 -10.21899 -9.82783 -9.62042 -9.54825 -9.25234 -8.74441 -8.26489 -8.12048 -7.77693 -7.21685 -6.34542 -3.27167 0.94470 1.44046 2.11132 2.87485 3.20556 3.38030 3.44772 3.49903 3.59304 3.82522 4.53554 4.54130 4.67672 4.72135 4.83720 4.84999 5.05436 5.18444 5.24084 5.33514 5.35871 5.45780 5.52856 5.54135 5.65665 5.69575 5.87479 5.88337 5.96070 5.98515 6.03401 6.23142 6.24684 6.28199 6.39916 6.43290 6.46850 6.55323 6.61201 6.68884 6.99171 7.07276 7.10492 7.27196 7.86216 8.19142 8.55935 8.92763 9.45318 10.33443 11.14974 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.003538 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.802037 B = 7913.230288 C = 8221.435195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.111 4.111 3 C -0.101 4.101 4 C -0.124 4.124 5 C 0.082 3.918 6 N -0.582 5.582 7 H 0.419 0.581 8 C 0.105 3.895 9 C -0.217 4.217 10 C 0.588 3.412 11 O -0.549 6.549 12 N -0.577 5.577 13 C 0.077 3.923 14 C 0.101 3.899 15 C 0.106 3.894 16 N -0.623 5.623 17 C -0.301 4.301 18 H 0.082 0.918 19 C -0.023 4.023 20 N -0.932 5.932 21 Si 1.057 2.943 22 H -0.293 1.293 23 H -0.281 1.281 24 H -0.296 1.296 25 C 0.091 3.909 26 C -0.059 4.059 27 C -0.065 4.065 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.183 0.817 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.261 0.739 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.638 16.778 -8.167 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.112 4.112 3 C -0.120 4.120 4 C -0.145 4.145 5 C -0.024 4.024 6 N -0.184 5.184 7 H 0.256 0.744 8 C -0.027 4.027 9 C -0.228 4.228 10 C 0.377 3.623 11 O -0.428 6.428 12 N -0.307 5.307 13 C -0.066 4.066 14 C -0.004 4.004 15 C -0.021 4.021 16 N -0.351 5.351 17 C -0.427 4.427 18 H 0.099 0.901 19 C -0.222 4.222 20 N -0.574 5.574 21 Si 0.889 3.111 22 H -0.221 1.221 23 H -0.207 1.207 24 H -0.223 1.223 25 C -0.035 4.035 26 C -0.064 4.064 27 C -0.083 4.083 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.200 0.800 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.225 16.464 -6.819 21.610 hybrid contribution 1.249 0.148 -1.529 1.980 sum -10.975 16.612 -8.348 21.589 Atomic orbital electron populations 1.20713 0.91097 1.02563 1.02113 1.19671 0.96026 0.92566 1.02986 1.20655 0.92820 0.97521 1.01011 1.19961 0.93800 0.94594 1.06102 1.18228 0.83149 0.95278 1.05714 1.41530 1.06164 1.06884 1.63773 0.74380 1.22375 0.99481 0.82318 0.98520 1.19979 0.92200 0.92574 1.18054 1.17272 0.81425 0.84662 0.78915 1.90743 1.33039 1.76512 1.42548 1.47230 1.28466 1.07116 1.47913 1.22056 0.86768 0.99055 0.98696 1.22472 0.98969 0.79971 0.98966 1.22813 0.92669 0.96313 0.90349 1.46422 1.01311 1.85085 1.02325 1.20126 0.80991 1.49431 0.92190 0.90071 1.25699 1.02989 0.99238 0.94291 1.70910 0.98515 1.50763 1.37255 0.83854 0.74639 0.76804 0.75792 1.22130 1.20689 1.22323 1.23129 0.87484 0.97495 0.95436 1.18709 0.92900 0.90655 1.04101 1.20461 0.91727 0.97998 0.98146 0.91452 0.91581 0.91811 0.85762 0.86165 0.79968 0.93058 0.92342 0.87803 0.87662 0.93465 0.93657 0.92876 0.92430 0.92689 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.00 36.01 0.36 -0.56 16 2 C -0.11 -1.25 5.88 -104.61 -0.61 -1.87 16 3 C -0.10 -1.00 9.66 -39.57 -0.38 -1.38 16 4 C -0.12 -1.25 10.07 -39.43 -0.40 -1.64 16 5 C 0.08 0.98 7.26 -83.97 -0.61 0.37 16 6 N -0.58 -5.74 5.99 -10.48 -0.06 -5.80 16 7 H 0.42 2.58 8.96 -40.82 -0.37 2.22 16 8 C 0.10 1.23 9.59 -16.62 -0.16 1.08 16 9 C -0.22 -3.32 5.48 -103.31 -0.57 -3.89 16 10 C 0.59 10.52 7.59 -12.75 -0.10 10.42 16 11 O -0.55 -11.22 16.64 5.21 0.09 -11.14 16 12 N -0.58 -10.28 3.12 -175.01 -0.55 -10.82 16 13 C 0.08 1.30 8.25 59.84 0.49 1.80 16 14 C 0.10 1.89 4.66 -67.67 -0.32 1.57 16 15 C 0.11 2.10 8.31 -8.50 -0.07 2.02 16 16 N -0.62 -14.44 2.33 -184.58 -0.43 -14.87 16 17 C -0.30 -8.13 10.48 -15.06 -0.16 -8.29 16 18 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 19 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 20 N -0.93 -28.19 13.70 55.49 0.76 -27.43 16 21 Si 1.06 25.74 25.48 -169.99 -4.33 21.41 16 22 H -0.29 -6.85 6.98 56.52 0.39 -6.46 16 23 H -0.28 -6.37 5.57 56.52 0.31 -6.06 16 24 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 25 C 0.09 1.87 4.63 -8.36 -0.04 1.83 16 26 C -0.06 -0.87 6.36 -104.95 -0.67 -1.53 16 27 C -0.06 -0.90 9.73 -39.37 -0.38 -1.28 16 28 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.18 1.79 6.32 -52.49 -0.33 1.46 16 34 H 0.05 0.82 7.33 -51.92 -0.38 0.44 16 35 H 0.06 0.85 5.96 -51.93 -0.31 0.55 16 36 H 0.10 2.14 5.10 -51.93 -0.26 1.88 16 37 H 0.11 1.88 7.32 -51.93 -0.38 1.50 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.26 7.80 8.73 -40.82 -0.36 7.45 16 41 H 0.06 1.16 7.04 -51.93 -0.37 0.79 16 42 H 0.06 1.17 5.32 -51.93 -0.28 0.89 16 43 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 345.26 15.07 5.20 5.20 Total: -1.00 -33.70 345.26 -8.74 -42.44 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.72 Total: 3.10 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -3.70 Total: -2.09 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.28 Total: -58.93 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -4.33 Total: 21.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.70 -8.74 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044341411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.252 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds