Wall clock time and date at job start Fri Apr 10 2020 22:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38750 * 119.84641 * 2 1 4 4 C 1.37766 * 120.63597 * 180.02562 * 3 2 1 5 5 C 1.39121 * 119.92590 * 359.97438 * 4 3 2 6 6 N 1.37965 * 133.18891 * 180.02562 * 5 4 3 7 7 H 0.96995 * 124.78320 * 359.95083 * 6 5 4 8 8 C 1.35463 * 110.43021 * 179.97438 * 6 5 4 9 9 C 1.36380 * 109.76964 * 359.97438 * 8 6 5 10 10 C 1.46905 * 126.77063 * 180.02562 * 9 8 6 11 11 O 1.21681 * 120.00148 * 219.06431 * 10 9 8 12 12 N 1.34775 * 120.00011 * 39.06267 * 10 9 8 13 13 C 1.46492 * 120.00056 * 355.35056 * 12 10 9 14 14 C 1.46508 * 119.99750 * 175.34783 * 12 10 9 15 15 C 1.53499 * 114.20291 * 120.00021 * 14 12 10 16 16 N 1.47072 * 87.98557 * 87.71338 * 15 14 12 17 17 C 1.36932 * 136.05989 * 207.07808 * 16 15 14 18 18 H 1.08003 * 119.99996 * 6.71518 * 17 16 15 19 19 C 1.38814 * 119.99968 * 186.70701 * 17 16 15 20 20 N 1.31621 * 120.00005 * 194.43503 * 19 17 16 21 21 Si 1.86800 * 120.00173 * 14.43928 * 19 17 16 22 22 H 1.48503 * 109.46954 * 269.99910 * 21 19 17 23 23 H 1.48501 * 109.46762 * 29.99279 * 21 19 17 24 24 H 1.48498 * 109.47226 * 149.99566 * 21 19 17 25 25 C 1.47076 * 87.88202 * 27.34267 * 16 15 14 26 26 C 1.40393 * 119.36170 * 0.30054 * 5 4 3 27 27 C 1.37746 * 119.84705 * 179.97438 * 2 1 3 28 28 H 1.09010 * 109.46955 * 90.00042 * 1 2 3 29 29 H 1.09000 * 109.47558 * 209.99723 * 1 2 3 30 30 H 1.08998 * 109.47526 * 330.00241 * 1 2 3 31 31 H 1.08004 * 119.68727 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.04006 * 179.97438 * 4 3 2 33 33 H 1.07999 * 125.12243 * 179.97438 * 8 6 5 34 34 H 1.09009 * 109.46847 * 275.17974 * 13 12 10 35 35 H 1.08996 * 109.47466 * 35.17476 * 13 12 10 36 36 H 1.09000 * 109.47354 * 155.18431 * 13 12 10 37 37 H 1.08990 * 113.28162 * 346.93824 * 14 12 10 38 38 H 1.08996 * 113.47015 * 332.94001 * 15 14 12 39 39 H 1.08996 * 113.46864 * 202.49348 * 15 14 12 40 40 H 0.97001 * 120.00124 * 354.94706 * 20 19 17 41 41 H 1.08994 * 113.47261 * 87.43725 * 25 16 15 42 42 H 1.09006 * 113.46149 * 217.87896 * 25 16 15 43 43 H 1.08003 * 120.16947 * 0.02714 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.2035 0.0000 4 6 3.5751 1.2224 -0.0005 5 6 4.2857 0.0264 -0.0005 6 7 5.6328 -0.2716 -0.0005 7 1 6.3451 0.3867 -0.0012 8 6 5.8203 -1.6132 0.0000 9 6 4.6131 -2.2477 0.0010 10 6 4.3821 -3.6985 0.0024 11 8 3.4782 -4.1713 -0.6610 12 7 5.1714 -4.5058 0.7383 13 6 6.3215 -3.9502 1.4558 14 6 4.8792 -5.9391 0.8209 15 6 6.0084 -6.8422 0.3056 16 7 6.5848 -6.8055 1.6582 17 6 7.8361 -6.9284 2.2004 18 1 8.7005 -6.9889 1.5557 19 6 7.9937 -6.9752 3.5788 20 7 9.1858 -6.8074 4.1109 21 14 6.5141 -7.2763 4.6785 22 1 5.8952 -5.9764 5.0426 23 1 5.5218 -8.1115 3.9553 24 1 6.9488 -7.9803 5.9116 25 6 5.2246 -6.5852 2.1727 26 6 3.5854 -1.1904 -0.0064 27 6 2.1926 -1.1947 0.0005 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6499 2.1344 0.0004 32 1 4.1028 2.1647 -0.0009 33 1 6.7811 -2.1063 -0.0002 34 1 7.1775 -3.8955 0.7831 35 1 6.0773 -2.9504 1.8149 36 1 6.5655 -4.5911 2.3030 37 1 3.8908 -6.1997 0.4429 38 1 6.6365 -6.3654 -0.4468 39 1 5.6687 -7.8334 0.0053 40 1 9.9649 -6.7243 3.5391 41 1 4.6782 -7.5086 2.3646 42 1 5.1851 -5.8893 3.0108 43 1 1.6528 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044341411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:00 Heat of formation + Delta-G solvation = 77.258916 kcal Electronic energy + Delta-G solvation = -25884.595136 eV Core-core repulsion = 22317.941323 eV Total energy + Delta-G solvation = -3566.653814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.50769 -41.20786 -39.29343 -38.32920 -35.69762 -34.43477 -33.05500 -32.32896 -30.53126 -29.52787 -27.85709 -27.27266 -26.91495 -25.19560 -23.68257 -23.22104 -22.12488 -21.07213 -19.99979 -19.34639 -18.81563 -17.97875 -17.34666 -17.14313 -16.41048 -16.31225 -15.98840 -15.76429 -15.43170 -15.36090 -15.16001 -15.00420 -14.66851 -14.37154 -14.19326 -14.03005 -13.51656 -13.45153 -13.21231 -12.95733 -12.79675 -12.66830 -12.48100 -12.32021 -12.10011 -12.00462 -11.88755 -11.45301 -11.25959 -11.06899 -10.78027 -10.66624 -9.59140 -9.20727 -9.12858 -8.71037 -8.55304 -5.40772 0.03364 0.56693 1.05637 1.42864 1.52047 1.66609 1.86352 2.05884 2.26892 2.54953 2.89910 2.99559 3.22237 3.59966 3.66276 3.73757 3.87564 4.08390 4.21138 4.28750 4.32368 4.34290 4.42232 4.46908 4.59711 4.63027 4.66524 4.69392 4.74950 4.79882 4.87262 4.90593 4.92069 5.11517 5.14019 5.22116 5.22144 5.41737 5.53999 5.60869 5.66686 5.77611 5.99742 6.13952 6.47481 6.55498 6.74690 7.18882 7.36583 8.31484 8.96209 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.003538 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.802037 B = 7913.230288 C = 8221.435195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.108 4.108 3 C -0.104 4.104 4 C -0.114 4.114 5 C 0.070 3.930 6 N -0.561 5.561 7 H 0.439 0.561 8 C 0.130 3.870 9 C -0.265 4.265 10 C 0.590 3.410 11 O -0.584 6.584 12 N -0.581 5.581 13 C 0.087 3.913 14 C 0.115 3.885 15 C 0.109 3.891 16 N -0.643 5.643 17 C -0.277 4.277 18 H 0.052 0.948 19 C -0.074 4.074 20 N -0.969 5.969 21 Si 1.091 2.909 22 H -0.280 1.280 23 H -0.255 1.255 24 H -0.307 1.307 25 C 0.090 3.910 26 C -0.088 4.088 27 C -0.102 4.102 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.203 0.797 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.117 0.883 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.248 0.752 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.087 19.504 -8.701 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.109 4.109 3 C -0.123 4.123 4 C -0.134 4.134 5 C -0.035 4.035 6 N -0.164 5.164 7 H 0.281 0.719 8 C -0.004 4.004 9 C -0.276 4.276 10 C 0.382 3.618 11 O -0.465 6.465 12 N -0.311 5.311 13 C -0.056 4.056 14 C 0.009 3.991 15 C -0.018 4.018 16 N -0.371 5.371 17 C -0.405 4.405 18 H 0.070 0.930 19 C -0.267 4.267 20 N -0.615 5.615 21 Si 0.918 3.082 22 H -0.207 1.207 23 H -0.179 1.179 24 H -0.236 1.236 25 C -0.036 4.036 26 C -0.092 4.092 27 C -0.121 4.121 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.220 0.780 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.135 0.865 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.692 19.235 -7.395 24.741 hybrid contribution 1.672 -0.590 -1.502 2.324 sum -12.020 18.644 -8.897 23.901 Atomic orbital electron populations 1.20779 0.89435 1.03401 1.02889 1.20029 0.97405 0.92273 1.01161 1.21090 0.93136 0.98136 0.99917 1.20420 0.94033 0.95167 1.03813 1.18440 0.83675 0.95123 1.06247 1.41488 1.06252 1.06608 1.62056 0.71940 1.22557 0.99055 0.83003 0.95800 1.19869 0.94094 0.91272 1.22320 1.17643 0.80484 0.85770 0.77934 1.90706 1.34455 1.77369 1.44017 1.47300 1.28819 1.06824 1.48133 1.21951 0.86817 0.99350 0.97448 1.22306 0.98986 0.80442 0.97334 1.22954 0.92634 0.97522 0.88685 1.46351 1.01197 1.85291 1.04307 1.19897 0.82048 1.46742 0.91777 0.92973 1.26728 1.04194 0.99785 0.96026 1.71008 0.99033 1.54145 1.37304 0.83447 0.72945 0.77589 0.74231 1.20693 1.17930 1.23571 1.23275 0.85870 0.98155 0.96270 1.18975 0.93388 0.91699 1.05138 1.20475 0.91998 0.98293 1.01352 0.90612 0.92181 0.89548 0.82381 0.82653 0.78013 0.92317 0.90008 0.91283 0.86544 0.93719 0.91735 0.94277 0.90889 0.93181 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.00 71.24 0.71 -0.95 16 2 C -0.11 -2.27 5.88 -19.86 -0.12 -2.38 16 3 C -0.10 -1.70 9.66 22.28 0.22 -1.48 16 4 C -0.11 -1.87 10.07 22.37 0.23 -1.64 16 5 C 0.07 1.52 7.26 38.91 0.28 1.81 16 6 N -0.56 -9.44 5.99 -187.08 -1.12 -10.56 16 7 H 0.44 3.74 8.96 -92.71 -0.83 2.91 16 8 C 0.13 2.82 9.59 83.70 0.80 3.62 16 9 C -0.26 -7.96 5.48 -19.01 -0.10 -8.06 16 10 C 0.59 21.17 7.59 86.51 0.66 21.83 16 11 O -0.58 -24.37 16.64 -4.29 -0.07 -24.44 16 12 N -0.58 -20.39 3.12 -825.84 -2.57 -22.97 16 13 C 0.09 2.88 8.25 127.77 1.05 3.93 16 14 C 0.11 4.16 4.66 45.55 0.21 4.37 16 15 C 0.11 4.17 8.31 83.18 0.69 4.87 16 16 N -0.64 -29.41 2.33 -737.90 -1.72 -31.13 16 17 C -0.28 -15.16 10.48 84.03 0.88 -14.28 16 18 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 19 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 20 N -0.97 -60.21 13.70 21.65 0.30 -59.92 16 21 Si 1.09 51.78 25.48 68.60 1.75 53.53 16 22 H -0.28 -12.57 6.98 99.48 0.69 -11.87 16 23 H -0.25 -10.85 5.57 99.48 0.55 -10.30 16 24 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16 25 C 0.09 3.57 4.63 83.27 0.39 3.96 16 26 C -0.09 -2.53 6.36 -20.07 -0.13 -2.66 16 27 C -0.10 -2.89 9.73 22.40 0.22 -2.67 16 28 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 30 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.20 3.46 6.32 -2.91 -0.02 3.44 16 34 H 0.06 1.82 7.33 -2.38 -0.02 1.80 16 35 H 0.08 2.29 5.96 -2.39 -0.01 2.27 16 36 H 0.07 2.83 5.10 -2.39 -0.01 2.81 16 37 H 0.12 4.02 7.32 -2.39 -0.02 4.00 16 38 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.25 15.44 8.73 -92.71 -0.81 14.63 16 41 H 0.07 2.73 7.04 -2.39 -0.02 2.71 16 42 H 0.05 2.06 5.32 -2.38 -0.01 2.05 16 43 H 0.10 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -75.90 345.26 3.03 -72.87 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.01 Total: 16.14 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 6.45 Total: 6.46 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -5.12 Total: -124.57 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.07 Total: -24.44 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 1.75 Total: 53.53 kcal Total: -75.90 3.03 -72.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044341411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.134 kcal (2) G-P(sol) polarization free energy of solvation -75.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds