Wall clock time and date at job start Fri Apr 10 2020 22:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86809 * 119.99557 * 2 1 4 4 H 1.48494 * 109.47176 * 240.00337 * 3 2 1 5 5 H 1.48500 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46890 * 120.00279 * 3 2 1 7 7 C 1.38811 * 120.00605 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00024 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99621 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99652 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61383 * 154.99900 * 10 9 7 12 12 C 1.53778 * 87.08022 * 89.11573 * 11 10 9 13 13 C 1.53006 * 113.61795 * 139.98452 * 12 11 10 14 14 N 1.46495 * 109.47411 * 176.52977 * 13 12 11 15 15 C 1.34778 * 119.99752 * 180.02562 * 14 13 12 16 16 O 1.21769 * 120.00047 * 359.97438 * 15 14 13 17 17 C 1.46209 * 119.99768 * 179.97438 * 15 14 13 18 18 C 1.41741 * 126.79977 * 0.25695 * 17 15 14 19 19 C 1.34518 * 107.77901 * 180.13547 * 18 17 15 20 20 N 1.36958 * 109.59987 * 359.63853 * 19 18 17 21 21 C 1.36706 * 131.34883 * 180.18983 * 20 19 18 22 22 C 1.35003 * 120.75170 * 179.97438 * 21 20 19 23 23 C 1.40308 * 120.38315 * 0.06470 * 22 21 20 24 24 C 1.36344 * 119.45587 * 359.96997 * 23 22 21 25 25 C 1.36942 * 108.74252 * 0.23165 * 20 19 18 26 26 C 1.53780 * 87.17415 * 25.39210 * 12 11 10 27 27 H 0.97000 * 120.00437 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99993 * 359.97438 * 9 7 2 29 29 H 1.09001 * 112.85049 * 23.80223 * 10 9 7 30 30 H 1.09002 * 113.61619 * 334.56599 * 11 10 9 31 31 H 1.09000 * 113.61973 * 203.66117 * 11 10 9 32 32 H 1.09009 * 113.61590 * 270.79589 * 12 11 10 33 33 H 1.09002 * 109.46732 * 56.52098 * 13 12 11 34 34 H 1.09003 * 109.46404 * 296.52874 * 13 12 11 35 35 H 0.96997 * 119.99909 * 359.97438 * 14 13 12 36 36 H 1.08007 * 126.11327 * 0.02562 * 18 17 15 37 37 H 1.08002 * 125.20347 * 179.90994 * 19 18 17 38 38 H 1.08003 * 119.62187 * 0.04391 * 21 20 19 39 39 H 1.08002 * 119.80530 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.27109 * 179.97438 * 23 22 21 41 41 H 1.07991 * 120.33677 * 179.97438 * 24 23 22 42 42 H 1.08997 * 113.61220 * 89.16176 * 26 12 11 43 43 H 1.08999 * 113.61411 * 220.06375 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6967 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.2605 -4.8287 0.5950 12 6 0.7208 -5.0791 -0.8231 13 6 0.6199 -6.5616 -1.1877 14 7 0.0214 -6.6978 -2.5179 15 6 -0.1673 -7.9217 -3.0498 16 8 0.1601 -8.9142 -2.4249 17 6 -0.7651 -8.0576 -4.3771 18 6 -1.1921 -7.0072 -5.2276 19 6 -1.6841 -7.5618 -6.3501 20 7 -1.5879 -8.9256 -6.2690 21 6 -1.9454 -9.9100 -7.1476 22 6 -1.7499 -11.2108 -6.8438 23 6 -1.1757 -11.5743 -5.6163 24 6 -0.8152 -10.6023 -4.7307 25 6 -1.0259 -9.2562 -5.0648 26 6 1.9981 -4.4014 -1.3466 27 1 -0.4851 0.8400 0.0004 28 1 0.3557 -2.3881 0.0002 29 1 3.0658 -3.5636 0.4048 30 1 0.4941 -4.5190 1.3055 31 1 1.8873 -5.6366 0.9725 32 1 -0.1909 -4.5252 -1.0475 33 1 -0.0028 -7.0745 -0.4547 34 1 1.6164 -7.0035 -1.1906 35 1 -0.2397 -5.9072 -3.0154 36 1 -1.1345 -5.9504 -5.0122 37 1 -2.0887 -7.0150 -7.1890 38 1 -2.3883 -9.6440 -8.0961 39 1 -2.0377 -11.9760 -7.5495 40 1 -1.0205 -12.6154 -5.3750 41 1 -0.3725 -10.8660 -3.7817 42 1 2.8269 -5.0922 -1.5009 43 1 1.8263 -3.7471 -2.2013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091137250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:04 Heat of formation + Delta-G solvation = 69.455835 kcal Electronic energy + Delta-G solvation = -24411.686049 eV Core-core repulsion = 20844.693868 eV Total energy + Delta-G solvation = -3566.992181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.52937 -39.41028 -38.29562 -36.84765 -34.47540 -33.27242 -33.09279 -30.48061 -30.02712 -28.59038 -26.97477 -25.00250 -24.05184 -23.82411 -23.01955 -21.75464 -21.47671 -20.04029 -18.47708 -17.95134 -17.30468 -16.86339 -16.25129 -15.85577 -15.82918 -15.59121 -15.04049 -14.73908 -14.65741 -14.15974 -14.01281 -13.63973 -13.21814 -13.12597 -12.96065 -12.82988 -12.19182 -12.16572 -11.93487 -11.86122 -11.65979 -11.32892 -11.00816 -10.81397 -10.60767 -10.43281 -10.18829 -10.03878 -9.69443 -9.66255 -9.39810 -8.99203 -8.87740 -8.80296 -7.62807 -6.97897 -5.78994 -3.07818 0.43584 0.93154 2.16446 2.32153 3.05219 3.43485 3.47954 3.48407 3.48890 3.68083 4.14309 4.45357 4.48746 4.57299 4.62417 4.79541 4.92423 5.08449 5.14824 5.22813 5.30615 5.39928 5.47925 5.51032 5.53954 5.70951 5.78281 5.85426 5.92821 5.97362 6.02625 6.07508 6.18443 6.27516 6.42061 6.42640 6.56663 6.58060 6.68350 6.79911 6.90647 6.96910 7.09313 7.70199 7.75570 8.40321 8.46080 9.50813 10.08994 10.43283 11.43392 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.024941 B = 0.002273 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.367388 B =12314.906448 C =13153.059245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.148 4.148 12 C -0.119 4.119 13 C 0.134 3.866 14 N -0.720 5.720 15 C 0.589 3.411 16 O -0.561 6.561 17 C -0.238 4.238 18 C -0.104 4.104 19 C -0.065 4.065 20 N -0.339 5.339 21 C 0.047 3.953 22 C -0.143 4.143 23 C -0.121 4.121 24 C -0.078 4.078 25 C 0.110 3.890 26 C -0.168 4.168 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.401 0.599 36 H 0.156 0.844 37 H 0.174 0.826 38 H 0.163 0.837 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.067 0.933 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 -22.199 -15.187 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.138 4.138 13 C 0.011 3.989 14 N -0.370 5.370 15 C 0.379 3.621 16 O -0.442 6.442 17 C -0.248 4.248 18 C -0.125 4.125 19 C -0.190 4.190 20 N -0.003 5.003 21 C -0.075 4.075 22 C -0.163 4.163 23 C -0.142 4.142 24 C -0.097 4.097 25 C 0.001 3.999 26 C -0.209 4.209 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.235 0.765 36 H 0.173 0.827 37 H 0.191 0.809 38 H 0.181 0.819 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.681 -22.729 -14.931 27.594 hybrid contribution -0.140 1.352 -0.495 1.447 sum -4.821 -21.376 -15.426 26.798 Atomic orbital electron populations 1.69647 1.05117 1.25860 1.57494 1.24760 0.95541 0.97762 1.02864 0.86246 0.78508 0.83416 0.77884 1.21239 1.21710 1.21220 1.19250 0.91091 0.84003 1.42928 0.91058 1.42165 1.05681 0.99433 1.87155 1.21099 0.95056 0.85583 0.92795 1.23435 1.00474 0.99646 0.95186 1.22704 0.99503 0.93103 0.98481 1.21433 0.97942 0.96799 0.82766 1.45792 1.63721 1.07833 1.19650 1.16998 0.77652 0.83239 0.84255 1.90751 1.53001 1.37499 1.62900 1.19404 1.16141 0.91524 0.97696 1.21120 0.99332 0.99173 0.92914 1.21706 1.14296 0.79593 1.03357 1.41546 1.38981 1.06731 1.13046 1.21693 1.02485 0.87759 0.95523 1.20788 1.02216 0.94631 0.98704 1.21139 0.99255 1.00225 0.93582 1.20910 0.98680 0.88928 1.01200 1.18649 1.00821 0.94362 0.86116 1.23903 0.95771 0.99587 1.01628 0.93416 0.78107 0.92013 0.91364 0.90473 0.88954 0.91944 0.91687 0.76484 0.82671 0.80892 0.81939 0.83518 0.84469 0.82654 0.91425 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.46 5.31 -52.55 -0.28 -17.74 16 10 C 0.17 3.29 4.57 -67.03 -0.31 2.98 16 11 C -0.15 -2.42 7.39 -25.92 -0.19 -2.61 16 12 C -0.12 -1.84 3.62 -89.81 -0.33 -2.17 16 13 C 0.13 1.92 5.50 -4.04 -0.02 1.90 16 14 N -0.72 -9.91 5.55 -61.76 -0.34 -10.25 16 15 C 0.59 8.98 7.77 -13.06 -0.10 8.88 16 16 O -0.56 -10.05 15.66 5.13 0.08 -9.97 16 17 C -0.24 -3.16 6.20 -104.46 -0.65 -3.81 16 18 C -0.10 -1.10 10.27 -39.56 -0.41 -1.50 16 19 C -0.06 -0.59 11.53 -16.58 -0.19 -0.78 16 20 N -0.34 -3.34 2.92 -60.81 -0.18 -3.52 16 21 C 0.05 0.32 10.89 -16.53 -0.18 0.14 16 22 C -0.14 -0.88 9.98 -39.95 -0.40 -1.28 16 23 C -0.12 -0.94 10.09 -39.49 -0.40 -1.34 16 24 C -0.08 -0.86 9.72 -39.50 -0.38 -1.24 16 25 C 0.11 1.36 6.70 -83.91 -0.56 0.79 16 26 C -0.17 -2.85 7.44 -25.83 -0.19 -3.04 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.38 10.06 7.90 -40.82 -0.32 9.73 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.96 7.87 -51.93 -0.41 0.55 16 35 H 0.40 4.85 7.44 -40.82 -0.30 4.55 16 36 H 0.16 1.32 7.53 -52.48 -0.40 0.93 16 37 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.16 0.54 8.06 -52.48 -0.42 0.12 16 39 H 0.15 0.43 8.06 -52.49 -0.42 0.00 16 40 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.16 1.82 7.07 -52.49 -0.37 1.45 16 42 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -33.89 363.35 -10.08 -43.96 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -5.98 Total: 12.32 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -4.55 Total: -10.35 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.07 Total: -58.64 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.89 -10.08 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091137250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.419 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds