Wall clock time and date at job start Fri Apr 10 2020 22:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86809 * 119.99557 * 2 1 4 4 H 1.48494 * 109.47176 * 240.00337 * 3 2 1 5 5 H 1.48500 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46890 * 120.00279 * 3 2 1 7 7 C 1.38811 * 120.00605 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00024 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99621 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99652 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61383 * 154.99900 * 10 9 7 12 12 C 1.53778 * 87.08022 * 89.11573 * 11 10 9 13 13 C 1.53006 * 113.61795 * 139.98452 * 12 11 10 14 14 N 1.46495 * 109.47411 * 176.52977 * 13 12 11 15 15 C 1.34778 * 119.99752 * 180.02562 * 14 13 12 16 16 O 1.21769 * 120.00047 * 359.97438 * 15 14 13 17 17 C 1.46209 * 119.99768 * 179.97438 * 15 14 13 18 18 C 1.41741 * 126.79977 * 0.25695 * 17 15 14 19 19 C 1.34518 * 107.77901 * 180.13547 * 18 17 15 20 20 N 1.36958 * 109.59987 * 359.63853 * 19 18 17 21 21 C 1.36706 * 131.34883 * 180.18983 * 20 19 18 22 22 C 1.35003 * 120.75170 * 179.97438 * 21 20 19 23 23 C 1.40308 * 120.38315 * 0.06470 * 22 21 20 24 24 C 1.36344 * 119.45587 * 359.96997 * 23 22 21 25 25 C 1.36942 * 108.74252 * 0.23165 * 20 19 18 26 26 C 1.53780 * 87.17415 * 25.39210 * 12 11 10 27 27 H 0.97000 * 120.00437 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99993 * 359.97438 * 9 7 2 29 29 H 1.09001 * 112.85049 * 23.80223 * 10 9 7 30 30 H 1.09002 * 113.61619 * 334.56599 * 11 10 9 31 31 H 1.09000 * 113.61973 * 203.66117 * 11 10 9 32 32 H 1.09009 * 113.61590 * 270.79589 * 12 11 10 33 33 H 1.09002 * 109.46732 * 56.52098 * 13 12 11 34 34 H 1.09003 * 109.46404 * 296.52874 * 13 12 11 35 35 H 0.96997 * 119.99909 * 359.97438 * 14 13 12 36 36 H 1.08007 * 126.11327 * 0.02562 * 18 17 15 37 37 H 1.08002 * 125.20347 * 179.90994 * 19 18 17 38 38 H 1.08003 * 119.62187 * 0.04391 * 21 20 19 39 39 H 1.08002 * 119.80530 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.27109 * 179.97438 * 23 22 21 41 41 H 1.07991 * 120.33677 * 179.97438 * 24 23 22 42 42 H 1.08997 * 113.61220 * 89.16176 * 26 12 11 43 43 H 1.08999 * 113.61411 * 220.06375 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6967 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.2605 -4.8287 0.5950 12 6 0.7208 -5.0791 -0.8231 13 6 0.6199 -6.5616 -1.1877 14 7 0.0214 -6.6978 -2.5179 15 6 -0.1673 -7.9217 -3.0498 16 8 0.1601 -8.9142 -2.4249 17 6 -0.7651 -8.0576 -4.3771 18 6 -1.1921 -7.0072 -5.2276 19 6 -1.6841 -7.5618 -6.3501 20 7 -1.5879 -8.9256 -6.2690 21 6 -1.9454 -9.9100 -7.1476 22 6 -1.7499 -11.2108 -6.8438 23 6 -1.1757 -11.5743 -5.6163 24 6 -0.8152 -10.6023 -4.7307 25 6 -1.0259 -9.2562 -5.0648 26 6 1.9981 -4.4014 -1.3466 27 1 -0.4851 0.8400 0.0004 28 1 0.3557 -2.3881 0.0002 29 1 3.0658 -3.5636 0.4048 30 1 0.4941 -4.5190 1.3055 31 1 1.8873 -5.6366 0.9725 32 1 -0.1909 -4.5252 -1.0475 33 1 -0.0028 -7.0745 -0.4547 34 1 1.6164 -7.0035 -1.1906 35 1 -0.2397 -5.9072 -3.0154 36 1 -1.1345 -5.9504 -5.0122 37 1 -2.0887 -7.0150 -7.1890 38 1 -2.3883 -9.6440 -8.0961 39 1 -2.0377 -11.9760 -7.5495 40 1 -1.0205 -12.6154 -5.3750 41 1 -0.3725 -10.8660 -3.7817 42 1 2.8269 -5.0922 -1.5009 43 1 1.8263 -3.7471 -2.2013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091137250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:04 Heat of formation + Delta-G solvation = 48.459453 kcal Electronic energy + Delta-G solvation = -24412.596520 eV Core-core repulsion = 20844.693868 eV Total energy + Delta-G solvation = -3567.902652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.23642 -40.65114 -39.65432 -37.50851 -35.93631 -34.88509 -33.95786 -32.09382 -30.98248 -29.57161 -28.13827 -26.42672 -25.74323 -24.62308 -24.16011 -22.86897 -22.39053 -21.08620 -19.81744 -19.33182 -18.80658 -17.70282 -17.05779 -16.85827 -16.67266 -16.63155 -16.35754 -16.09577 -15.64767 -15.60723 -15.28875 -14.81239 -14.64329 -14.50316 -14.03597 -13.71462 -13.61947 -13.27548 -12.91364 -12.90524 -12.82925 -12.60706 -12.53161 -12.27463 -12.19086 -12.05671 -11.53027 -11.46568 -11.37750 -11.02826 -10.88272 -10.72527 -10.02560 -9.66526 -8.98818 -8.36007 -7.93829 -5.22264 -0.24229 0.24832 1.32646 1.48658 1.51424 1.57453 1.65844 2.34285 2.42378 2.56955 2.72345 3.38288 3.58859 3.73279 3.81655 3.82418 3.87357 3.94899 4.02479 4.09717 4.17822 4.26827 4.33700 4.42174 4.47280 4.74328 4.76128 4.79496 4.86247 4.93564 4.93944 5.00136 5.12886 5.22616 5.30485 5.32100 5.35799 5.38505 5.51487 5.58379 5.66293 5.68937 5.85317 6.29068 6.29501 6.67624 7.34449 7.34981 8.11562 8.34405 9.29213 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.024941 B = 0.002273 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.367388 B =12314.906448 C =13153.059245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.145 3.855 11 C -0.134 4.134 12 C -0.102 4.102 13 C 0.143 3.857 14 N -0.716 5.716 15 C 0.584 3.416 16 O -0.599 6.599 17 C -0.287 4.287 18 C -0.115 4.115 19 C -0.060 4.060 20 N -0.342 5.342 21 C 0.048 3.952 22 C -0.146 4.146 23 C -0.095 4.095 24 C -0.128 4.128 25 C 0.096 3.904 26 C -0.153 4.153 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.408 0.592 36 H 0.167 0.833 37 H 0.211 0.789 38 H 0.206 0.794 39 H 0.189 0.811 40 H 0.163 0.837 41 H 0.132 0.868 42 H 0.089 0.911 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.108 -23.651 -17.804 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.035 3.965 11 C -0.173 4.173 12 C -0.121 4.121 13 C 0.020 3.980 14 N -0.366 5.366 15 C 0.376 3.624 16 O -0.483 6.483 17 C -0.296 4.296 18 C -0.136 4.136 19 C -0.184 4.184 20 N -0.006 5.006 21 C -0.072 4.072 22 C -0.165 4.165 23 C -0.116 4.116 24 C -0.146 4.146 25 C -0.015 4.015 26 C -0.193 4.193 27 H 0.060 0.940 28 H 0.206 0.794 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.244 0.756 36 H 0.185 0.815 37 H 0.228 0.772 38 H 0.223 0.777 39 H 0.207 0.793 40 H 0.180 0.820 41 H 0.150 0.850 42 H 0.107 0.893 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.827 -24.191 -17.561 30.280 hybrid contribution -0.098 1.591 0.202 1.607 sum -4.924 -22.600 -17.359 28.920 Atomic orbital electron populations 1.69804 1.06550 1.26136 1.59445 1.25561 0.96404 1.01068 1.03759 0.85211 0.77180 0.79194 0.78164 1.20403 1.22229 1.20474 1.19640 0.91525 0.85189 1.41165 0.90580 1.42295 1.05319 1.00526 1.87606 1.21406 0.95057 0.84898 0.95101 1.23343 0.99980 0.98676 0.95334 1.22487 0.98365 0.93515 0.97685 1.21258 0.97960 0.95596 0.83190 1.45719 1.63528 1.07965 1.19393 1.17385 0.77169 0.82842 0.85004 1.90708 1.54939 1.38583 1.64116 1.19381 1.19269 0.93297 0.97669 1.21347 0.99609 0.99401 0.93234 1.22261 1.13073 0.79429 1.03655 1.41826 1.38471 1.07647 1.12630 1.22588 1.00981 0.87514 0.96163 1.21330 1.01139 0.95555 0.98457 1.21585 0.96067 1.00768 0.93214 1.20848 1.02297 0.89594 1.01902 1.18841 1.00833 0.94589 0.87188 1.23729 0.97226 0.99160 0.99207 0.94015 0.79351 0.92121 0.92298 0.87700 0.90091 0.92219 0.91696 0.75618 0.81538 0.77199 0.77736 0.79342 0.81961 0.84974 0.89266 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.07 13.06 21.65 0.28 -58.78 16 2 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.24 -13.51 9.97 84.03 0.84 -12.68 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.72 -36.17 5.31 -320.17 -1.70 -37.86 16 10 C 0.15 5.71 4.57 45.58 0.21 5.92 16 11 C -0.13 -4.31 7.39 31.12 0.23 -4.08 16 12 C -0.10 -3.13 3.62 -10.27 -0.04 -3.17 16 13 C 0.14 4.15 5.50 86.38 0.47 4.62 16 14 N -0.72 -20.36 5.55 -467.49 -2.59 -22.96 16 15 C 0.58 18.83 7.77 86.31 0.67 19.50 16 16 O -0.60 -22.92 15.66 -4.57 -0.07 -22.99 16 17 C -0.29 -7.94 6.20 -19.76 -0.12 -8.07 16 18 C -0.11 -2.40 10.27 22.28 0.23 -2.18 16 19 C -0.06 -0.97 11.53 83.04 0.96 -0.02 16 20 N -0.34 -6.08 2.92 -346.29 -1.01 -7.10 16 21 C 0.05 0.47 10.89 83.19 0.91 1.38 16 22 C -0.15 -1.20 9.98 22.03 0.22 -0.98 16 23 C -0.10 -1.29 10.09 22.33 0.23 -1.06 16 24 C -0.13 -2.88 9.72 22.32 0.22 -2.66 16 25 C 0.10 2.41 6.70 39.43 0.26 2.68 16 26 C -0.15 -5.12 7.44 31.18 0.23 -4.89 16 27 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.37 20.13 7.90 -92.71 -0.73 19.39 16 29 H 0.06 2.38 8.10 -2.39 -0.02 2.36 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.10 2.81 8.10 -2.39 -0.02 2.80 16 32 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.90 7.87 -2.39 -0.02 1.88 16 35 H 0.41 10.20 7.44 -92.71 -0.69 9.51 16 36 H 0.17 2.83 7.53 -2.91 -0.02 2.80 16 37 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.21 0.19 8.06 -2.91 -0.02 0.16 16 39 H 0.19 -0.01 8.06 -2.91 -0.02 -0.03 16 40 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.13 3.48 7.07 -2.92 -0.02 3.46 16 42 H 0.09 2.63 7.92 -2.39 -0.02 2.61 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -76.89 363.35 2.53 -74.36 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -0.39 Total: 36.80 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 5.98 Total: -9.56 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -5.02 Total: -126.70 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.07 Total: -22.99 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -76.89 2.53 -74.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091137250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.824 kcal (2) G-P(sol) polarization free energy of solvation -76.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds