Wall clock time and date at job start Fri Apr 10 2020 22:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86793 * 120.00450 * 2 1 4 4 H 1.48501 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47232 * 299.99467 * 3 2 1 6 6 H 1.48498 * 109.47434 * 59.99573 * 3 2 1 7 7 C 1.38622 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00383 * 180.02562 * 7 2 1 9 9 O 1.34809 * 120.00389 * 0.02562 * 7 2 1 10 10 C 1.35796 * 117.00833 * 185.05605 * 9 7 2 11 11 C 1.38893 * 119.99965 * 174.73324 * 10 9 7 12 12 C 1.38014 * 120.00778 * 180.23531 * 11 10 9 13 13 C 1.38943 * 119.99201 * 359.49313 * 12 11 10 14 14 N 1.39777 * 120.00781 * 180.27893 * 13 12 11 15 15 C 1.46505 * 120.00307 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47040 * 179.97438 * 15 14 13 17 17 C 1.39862 * 126.03828 * 269.68903 * 16 15 14 18 18 N 1.30844 * 108.20154 * 179.82145 * 17 16 15 19 19 N 1.40088 * 108.20401 * 0.43570 * 18 17 16 20 20 C 1.46494 * 126.04158 * 179.73928 * 19 18 17 21 21 C 1.53776 * 113.61845 * 194.11329 * 20 19 18 22 22 C 1.53956 * 87.01978 * 220.05066 * 21 20 19 23 23 C 1.53780 * 87.11400 * 25.36209 * 22 21 20 24 24 C 1.34951 * 107.92439 * 359.72208 * 19 18 17 25 25 C 1.38954 * 119.98932 * 0.25430 * 13 12 11 26 26 C 1.38011 * 119.99424 * 359.97438 * 25 13 12 27 27 H 0.97008 * 119.99295 * 0.02562 * 1 2 3 28 28 H 1.08008 * 119.99862 * 0.02562 * 11 10 9 29 29 H 1.08000 * 120.00120 * 179.76863 * 12 11 10 30 30 H 0.97000 * 119.99703 * 359.97438 * 14 13 12 31 31 H 1.08997 * 109.46630 * 299.99316 * 15 14 13 32 32 H 1.08999 * 109.47123 * 59.99416 * 15 14 13 33 33 H 1.08001 * 125.90368 * 359.97438 * 17 16 15 34 34 H 1.09002 * 112.84888 * 325.31074 * 20 19 18 35 35 H 1.08997 * 113.61786 * 334.56702 * 21 20 19 36 36 H 1.08997 * 113.61706 * 105.47239 * 21 20 19 37 37 H 1.09009 * 113.53543 * 270.80773 * 22 21 20 38 38 H 1.09007 * 113.74355 * 139.94636 * 22 21 20 39 39 H 1.09001 * 113.61450 * 220.09296 * 23 22 21 40 40 H 1.09002 * 113.61259 * 89.18461 * 23 22 21 41 41 H 1.08003 * 126.12931 * 180.02562 * 24 19 18 42 42 H 1.07997 * 120.00520 * 180.02562 * 25 13 12 43 43 H 1.07991 * 119.99821 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.7099 1.3462 0.0006 5 1 1.8913 2.3963 -1.2126 6 1 1.8912 2.3964 1.2124 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3680 0.0005 10 6 2.0701 -3.5046 0.1077 11 6 1.4349 -4.7343 0.2243 12 6 2.1820 -5.8891 0.3381 13 6 3.5698 -5.8225 0.3254 14 7 4.3268 -6.9925 0.4348 15 6 5.7901 -6.9221 0.4220 16 6 6.3610 -8.3107 0.5538 17 6 6.6829 -8.9577 1.7512 18 7 7.1475 -10.1461 1.4615 19 7 7.1451 -10.2891 0.0680 20 6 7.5920 -11.4679 -0.6783 21 6 7.7918 -11.2068 -2.1805 22 6 7.1643 -12.5917 -2.4227 23 6 6.4483 -12.4172 -1.0729 24 6 6.6580 -9.1494 -0.4657 25 6 4.2051 -4.5928 0.2035 26 6 3.4575 -3.4378 0.0945 27 1 -0.4849 0.8402 -0.0004 28 1 0.3561 -4.7865 0.2293 29 1 1.6880 -6.8448 0.4325 30 1 3.8832 -7.8509 0.5200 31 1 6.1243 -6.4791 -0.5161 32 1 6.1317 -6.3085 1.2556 33 1 6.5659 -8.5483 2.7437 34 1 8.4354 -11.9726 -0.2069 35 1 7.1910 -10.3822 -2.5641 36 1 8.8386 -11.1429 -2.4772 37 1 7.8914 -13.4039 -2.4295 38 1 6.4864 -12.6233 -3.2757 39 1 6.4123 -13.3290 -0.4767 40 1 5.4796 -11.9240 -1.1531 41 1 6.5281 -8.9436 -1.5180 42 1 5.2838 -4.5408 0.1932 43 1 3.9511 -2.4821 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119930690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:11 Heat of formation + Delta-G solvation = 106.909311 kcal Electronic energy + Delta-G solvation = -24050.282802 eV Core-core repulsion = 20484.914725 eV Total energy + Delta-G solvation = -3565.368076 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65833 -39.06305 -38.83888 -36.98436 -34.53148 -32.14201 -31.77006 -30.75951 -30.08850 -27.71661 -26.36655 -25.98323 -25.03699 -24.43533 -21.98307 -21.64192 -20.78786 -20.33584 -19.63148 -17.98552 -17.66275 -17.04143 -16.27156 -15.80772 -15.36324 -15.01754 -14.70923 -14.40186 -14.12920 -13.91198 -13.88165 -13.40276 -13.36751 -13.18994 -12.89861 -12.73252 -12.57897 -12.39644 -12.11225 -11.89859 -11.51230 -11.40270 -11.27547 -11.20724 -11.14098 -10.93814 -10.68350 -10.51109 -10.31966 -9.63021 -9.17138 -9.10288 -8.69083 -8.38209 -8.10431 -6.31943 -6.27705 -3.84970 1.61436 2.19533 2.26875 2.51653 2.64656 3.20867 3.22313 3.27410 3.68022 3.88433 4.09075 4.14863 4.16767 4.20468 4.47811 4.63648 4.74856 4.92010 5.02889 5.04109 5.11431 5.23877 5.25817 5.26617 5.31747 5.38935 5.48360 5.57479 5.69605 5.70631 5.80513 5.84149 6.07562 6.27672 6.37254 6.43030 6.56138 6.76032 6.89693 7.05806 7.17245 7.39906 7.48479 7.53338 7.69489 8.07981 8.16493 8.35733 9.18073 9.93684 10.90789 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.028852 B = 0.002059 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.239500 B =13594.659581 C =13754.937414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.034 3.966 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.384 4.384 8 H 0.088 0.912 9 O -0.190 6.190 10 C 0.111 3.889 11 C -0.149 4.149 12 C -0.145 4.145 13 C 0.127 3.873 14 N -0.756 5.756 15 C 0.213 3.787 16 C -0.249 4.249 17 C 0.062 3.938 18 N -0.301 5.301 19 N -0.363 5.363 20 C 0.136 3.864 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.148 4.148 24 C 0.072 3.928 25 C -0.145 4.145 26 C -0.191 4.191 27 H 0.266 0.734 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.390 0.610 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.183 0.817 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.172 0.828 42 H 0.107 0.893 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.106 -23.130 -3.272 28.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.168 4.168 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.461 4.461 8 H 0.106 0.894 9 O -0.095 6.095 10 C 0.059 3.941 11 C -0.169 4.169 12 C -0.168 4.168 13 C 0.028 3.972 14 N -0.392 5.392 15 C 0.087 3.913 16 C -0.261 4.261 17 C -0.124 4.124 18 N -0.120 5.120 19 N -0.144 5.144 20 C 0.034 3.966 21 C -0.185 4.185 22 C -0.175 4.175 23 C -0.187 4.187 24 C -0.075 4.075 25 C -0.167 4.167 26 C -0.210 4.210 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.223 0.777 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.200 0.800 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.189 0.811 42 H 0.125 0.875 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.395 -24.051 -2.897 29.251 hybrid contribution 0.075 1.276 -0.244 1.302 sum 16.470 -22.775 -3.141 28.281 Atomic orbital electron populations 1.70065 1.05817 1.27058 1.47734 1.25214 0.95803 0.98599 0.97207 0.85701 0.79086 0.80867 0.78059 1.19268 1.20376 1.20362 1.21278 0.91595 0.81134 1.52116 0.89421 1.83982 1.33836 1.11118 1.80603 1.19234 0.90167 0.88204 0.96487 1.20001 0.99227 0.89962 1.07668 1.20111 0.91527 0.97253 1.07872 1.17417 0.90245 0.86350 1.03150 1.44353 1.03427 1.05877 1.85551 1.19229 0.80880 0.90526 1.00622 1.20161 1.14060 0.99690 0.92145 1.23867 0.97604 0.91368 0.99575 1.77371 1.24348 1.19627 0.90691 1.48670 1.48877 1.12434 1.04441 1.22992 0.98659 0.84398 0.90550 1.23454 1.02943 0.99067 0.93035 1.22739 1.00162 0.96778 0.97863 1.23447 0.98319 0.99816 0.97072 1.22296 0.98418 0.86879 0.99866 1.20286 0.98274 0.91018 1.07165 1.21007 0.93708 0.98346 1.07987 0.92425 0.86572 0.87330 0.77718 0.92737 0.92343 0.80013 0.86148 0.88785 0.89809 0.89319 0.90029 0.90228 0.89209 0.81091 0.87514 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.67 55.48 0.76 -25.50 16 2 C 0.03 0.97 5.49 -17.52 -0.10 0.88 16 3 Si 0.94 21.14 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.38 -11.03 9.48 30.87 0.29 -10.74 16 8 H 0.09 2.34 5.20 -52.48 -0.27 2.06 16 9 O -0.19 -5.58 9.75 -0.04 0.00 -5.58 16 10 C 0.11 2.76 6.65 -39.09 -0.26 2.50 16 11 C -0.15 -3.21 9.98 -39.42 -0.39 -3.61 16 12 C -0.15 -2.65 9.89 -39.40 -0.39 -3.04 16 13 C 0.13 2.20 6.66 -83.71 -0.56 1.64 16 14 N -0.76 -10.30 5.73 -59.75 -0.34 -10.65 16 15 C 0.21 2.49 5.39 -5.19 -0.03 2.46 16 16 C -0.25 -2.63 5.47 -105.05 -0.57 -3.21 16 17 C 0.06 0.68 11.96 -17.37 -0.21 0.47 16 18 N -0.30 -3.54 12.58 30.62 0.39 -3.16 16 19 N -0.36 -3.48 3.81 -54.07 -0.21 -3.68 16 20 C 0.14 0.89 5.02 -67.12 -0.34 0.56 16 21 C -0.15 -0.66 7.46 -25.83 -0.19 -0.85 16 22 C -0.14 -0.52 8.09 -25.83 -0.21 -0.73 16 23 C -0.15 -0.83 7.88 -25.92 -0.20 -1.03 16 24 C 0.07 0.68 10.60 -17.22 -0.18 0.49 16 25 C -0.15 -2.71 9.30 -39.40 -0.37 -3.08 16 26 C -0.19 -4.23 9.16 -39.42 -0.36 -4.59 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 29 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.39 4.91 8.48 -40.82 -0.35 4.56 16 31 H 0.05 0.63 7.95 -51.93 -0.41 0.22 16 32 H 0.06 0.70 7.95 -51.93 -0.41 0.29 16 33 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.43 6.32 -51.93 -0.33 0.10 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.24 8.14 -51.92 -0.42 -0.18 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.17 1.21 6.69 -52.48 -0.35 0.86 16 42 H 0.11 1.73 6.73 -52.49 -0.35 1.37 16 43 H 0.13 2.80 5.63 -52.49 -0.30 2.51 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -33.47 361.17 -8.76 -42.23 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.71 Total: 6.67 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -4.07 Total: -21.88 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.60 Total: -42.99 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.00 Total: -5.58 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.47 -8.76 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119930690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.144 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds