Wall clock time and date at job start Fri Apr 10 2020 22:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86793 * 120.00450 * 2 1 4 4 H 1.48501 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47232 * 299.99467 * 3 2 1 6 6 H 1.48498 * 109.47434 * 59.99573 * 3 2 1 7 7 C 1.38622 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00383 * 180.02562 * 7 2 1 9 9 O 1.34809 * 120.00389 * 0.02562 * 7 2 1 10 10 C 1.35796 * 117.00833 * 185.05605 * 9 7 2 11 11 C 1.38893 * 119.99965 * 174.73324 * 10 9 7 12 12 C 1.38014 * 120.00778 * 180.23531 * 11 10 9 13 13 C 1.38943 * 119.99201 * 359.49313 * 12 11 10 14 14 N 1.39777 * 120.00781 * 180.27893 * 13 12 11 15 15 C 1.46505 * 120.00307 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47040 * 179.97438 * 15 14 13 17 17 C 1.39862 * 126.03828 * 269.68903 * 16 15 14 18 18 N 1.30844 * 108.20154 * 179.82145 * 17 16 15 19 19 N 1.40088 * 108.20401 * 0.43570 * 18 17 16 20 20 C 1.46494 * 126.04158 * 179.73928 * 19 18 17 21 21 C 1.53776 * 113.61845 * 194.11329 * 20 19 18 22 22 C 1.53956 * 87.01978 * 220.05066 * 21 20 19 23 23 C 1.53780 * 87.11400 * 25.36209 * 22 21 20 24 24 C 1.34951 * 107.92439 * 359.72208 * 19 18 17 25 25 C 1.38954 * 119.98932 * 0.25430 * 13 12 11 26 26 C 1.38011 * 119.99424 * 359.97438 * 25 13 12 27 27 H 0.97008 * 119.99295 * 0.02562 * 1 2 3 28 28 H 1.08008 * 119.99862 * 0.02562 * 11 10 9 29 29 H 1.08000 * 120.00120 * 179.76863 * 12 11 10 30 30 H 0.97000 * 119.99703 * 359.97438 * 14 13 12 31 31 H 1.08997 * 109.46630 * 299.99316 * 15 14 13 32 32 H 1.08999 * 109.47123 * 59.99416 * 15 14 13 33 33 H 1.08001 * 125.90368 * 359.97438 * 17 16 15 34 34 H 1.09002 * 112.84888 * 325.31074 * 20 19 18 35 35 H 1.08997 * 113.61786 * 334.56702 * 21 20 19 36 36 H 1.08997 * 113.61706 * 105.47239 * 21 20 19 37 37 H 1.09009 * 113.53543 * 270.80773 * 22 21 20 38 38 H 1.09007 * 113.74355 * 139.94636 * 22 21 20 39 39 H 1.09001 * 113.61450 * 220.09296 * 23 22 21 40 40 H 1.09002 * 113.61259 * 89.18461 * 23 22 21 41 41 H 1.08003 * 126.12931 * 180.02562 * 24 19 18 42 42 H 1.07997 * 120.00520 * 180.02562 * 25 13 12 43 43 H 1.07991 * 119.99821 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.7099 1.3462 0.0006 5 1 1.8913 2.3963 -1.2126 6 1 1.8912 2.3964 1.2124 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3680 0.0005 10 6 2.0701 -3.5046 0.1077 11 6 1.4349 -4.7343 0.2243 12 6 2.1820 -5.8891 0.3381 13 6 3.5698 -5.8225 0.3254 14 7 4.3268 -6.9925 0.4348 15 6 5.7901 -6.9221 0.4220 16 6 6.3610 -8.3107 0.5538 17 6 6.6829 -8.9577 1.7512 18 7 7.1475 -10.1461 1.4615 19 7 7.1451 -10.2891 0.0680 20 6 7.5920 -11.4679 -0.6783 21 6 7.7918 -11.2068 -2.1805 22 6 7.1643 -12.5917 -2.4227 23 6 6.4483 -12.4172 -1.0729 24 6 6.6580 -9.1494 -0.4657 25 6 4.2051 -4.5928 0.2035 26 6 3.4575 -3.4378 0.0945 27 1 -0.4849 0.8402 -0.0004 28 1 0.3561 -4.7865 0.2293 29 1 1.6880 -6.8448 0.4325 30 1 3.8832 -7.8509 0.5200 31 1 6.1243 -6.4791 -0.5161 32 1 6.1317 -6.3085 1.2556 33 1 6.5659 -8.5483 2.7437 34 1 8.4354 -11.9726 -0.2069 35 1 7.1910 -10.3822 -2.5641 36 1 8.8386 -11.1429 -2.4772 37 1 7.8914 -13.4039 -2.4295 38 1 6.4864 -12.6233 -3.2757 39 1 6.4123 -13.3290 -0.4767 40 1 5.4796 -11.9240 -1.1531 41 1 6.5281 -8.9436 -1.5180 42 1 5.2838 -4.5408 0.1932 43 1 3.9511 -2.4821 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119930690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:10 Heat of formation + Delta-G solvation = 86.260299 kcal Electronic energy + Delta-G solvation = -24051.178210 eV Core-core repulsion = 20484.914725 eV Total energy + Delta-G solvation = -3566.263485 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.37554 -40.63935 -39.45374 -38.62748 -35.89083 -34.09269 -32.60439 -31.82555 -31.65605 -29.01051 -27.29159 -26.77673 -26.58841 -25.34932 -23.49965 -22.35958 -22.17986 -21.30117 -20.16312 -19.79310 -18.97797 -18.23731 -17.39469 -16.72707 -16.55669 -16.19621 -15.79386 -15.57715 -15.38658 -15.33723 -15.17678 -14.93262 -14.40316 -14.10544 -14.08236 -13.83915 -13.47884 -13.39316 -13.35346 -13.04862 -12.92961 -12.81033 -12.52199 -12.30400 -12.20826 -12.05515 -11.65943 -11.61754 -11.40344 -11.03797 -10.87507 -10.37468 -10.11405 -9.71741 -9.46803 -8.36533 -7.85594 -5.99463 0.64605 0.88310 0.99481 1.38527 1.47643 1.55997 1.56773 1.68269 2.24973 2.95548 2.99020 3.23271 3.30580 3.48660 3.72341 3.73896 3.79790 3.85596 3.97050 4.18676 4.22626 4.27400 4.45248 4.53251 4.62793 4.64284 4.69848 4.77513 4.82077 4.84207 4.92791 4.98423 5.01528 5.03162 5.17104 5.21234 5.31373 5.35105 5.57246 5.60662 5.66248 5.84369 6.04707 6.10371 6.15295 6.69777 6.72495 7.08841 7.12473 7.97859 8.88385 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.028852 B = 0.002059 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.239500 B =13594.659581 C =13754.937414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.031 4.031 3 Si 1.017 2.983 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.402 4.402 8 H 0.098 0.902 9 O -0.244 6.244 10 C 0.059 3.941 11 C -0.155 4.155 12 C -0.144 4.144 13 C 0.156 3.844 14 N -0.741 5.741 15 C 0.214 3.786 16 C -0.262 4.262 17 C 0.055 3.945 18 N -0.333 5.333 19 N -0.361 5.361 20 C 0.120 3.880 21 C -0.139 4.139 22 C -0.126 4.126 23 C -0.149 4.149 24 C 0.081 3.919 25 C -0.148 4.148 26 C -0.193 4.193 27 H 0.269 0.731 28 H 0.112 0.888 29 H 0.143 0.857 30 H 0.399 0.601 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.193 0.807 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.196 0.804 42 H 0.138 0.862 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.880 -25.095 -4.001 31.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.227 4.227 3 Si 0.837 3.163 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.479 4.479 8 H 0.116 0.884 9 O -0.152 6.152 10 C 0.010 3.990 11 C -0.174 4.174 12 C -0.166 4.166 13 C 0.055 3.945 14 N -0.375 5.375 15 C 0.089 3.911 16 C -0.274 4.274 17 C -0.131 4.131 18 N -0.154 5.154 19 N -0.142 5.142 20 C 0.019 3.981 21 C -0.178 4.178 22 C -0.164 4.164 23 C -0.188 4.188 24 C -0.068 4.068 25 C -0.170 4.170 26 C -0.213 4.213 27 H 0.078 0.922 28 H 0.130 0.870 29 H 0.161 0.839 30 H 0.234 0.766 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.210 0.790 34 H 0.141 0.859 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.213 0.787 42 H 0.155 0.845 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 19.229 -26.122 -3.619 32.637 hybrid contribution -0.623 1.445 -0.005 1.574 sum 18.606 -24.676 -3.625 31.116 Atomic orbital electron populations 1.70220 1.07944 1.28241 1.50398 1.26534 0.96871 1.02649 0.96659 0.84545 0.78256 0.75155 0.78344 1.17464 1.19527 1.19636 1.21788 0.92329 0.81781 1.52008 0.88423 1.83929 1.35578 1.12320 1.83420 1.19738 0.91516 0.88004 0.99777 1.20216 0.99551 0.90192 1.07485 1.20405 0.92011 0.97386 1.06814 1.17527 0.90270 0.87249 0.99446 1.44484 1.04419 1.04946 1.83653 1.19306 0.79173 0.91471 1.01145 1.20036 1.15428 0.99482 0.92436 1.24120 0.97318 0.91261 1.00359 1.77332 1.25499 1.20293 0.92245 1.48946 1.48171 1.13167 1.03898 1.23391 0.99200 0.83980 0.91510 1.23466 1.03770 0.99539 0.91018 1.22731 1.00089 0.96805 0.96805 1.23431 0.97578 0.99398 0.98351 1.22676 0.96951 0.86355 1.00777 1.20508 0.99624 0.90222 1.06668 1.21059 0.92909 0.99413 1.07916 0.92240 0.86996 0.83898 0.76607 0.91809 0.92113 0.79031 0.85932 0.88559 0.88743 0.88024 0.89388 0.90285 0.90339 0.78737 0.84463 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.81 13.67 21.61 0.30 -58.51 16 2 C -0.03 -1.84 5.49 84.82 0.47 -1.37 16 3 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 4 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.40 -24.16 9.48 67.91 0.64 -23.51 16 8 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 9 O -0.24 -15.20 9.75 -23.04 -0.22 -15.43 16 10 C 0.06 3.03 6.65 22.59 0.15 3.18 16 11 C -0.15 -6.78 9.98 22.37 0.22 -6.55 16 12 C -0.14 -4.95 9.89 22.39 0.22 -4.73 16 13 C 0.16 4.96 6.66 38.21 0.25 5.21 16 14 N -0.74 -17.32 5.73 -342.96 -1.96 -19.29 16 15 C 0.21 4.20 5.39 85.63 0.46 4.66 16 16 C -0.26 -4.76 5.47 -20.14 -0.11 -4.87 16 17 C 0.06 1.10 11.96 85.23 1.02 2.11 16 18 N -0.33 -7.32 12.58 -57.02 -0.72 -8.04 16 19 N -0.36 -6.12 3.81 -324.99 -1.24 -7.36 16 20 C 0.12 1.32 5.02 45.52 0.23 1.55 16 21 C -0.14 -0.84 7.46 31.18 0.23 -0.61 16 22 C -0.13 -0.59 8.09 31.18 0.25 -0.34 16 23 C -0.15 -1.37 7.88 31.12 0.25 -1.13 16 24 C 0.08 1.26 10.60 83.54 0.89 2.14 16 25 C -0.15 -5.19 9.30 22.39 0.21 -4.98 16 26 C -0.19 -8.63 9.16 22.38 0.20 -8.42 16 27 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 28 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 29 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.40 8.40 8.48 -92.71 -0.79 7.61 16 31 H 0.06 1.20 7.95 -2.39 -0.02 1.18 16 32 H 0.06 1.23 7.95 -2.39 -0.02 1.21 16 33 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 0.55 6.32 -2.39 -0.02 0.53 16 36 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 38 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.20 1.98 6.69 -2.91 -0.02 1.96 16 42 H 0.14 3.96 6.73 -2.91 -0.02 3.94 16 43 H 0.12 5.32 5.63 -2.92 -0.02 5.30 16 Total: -1.00 -77.05 361.17 4.02 -73.03 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.25 Total: 26.92 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 5.59 Total: -37.67 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -3.62 Total: -93.19 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.22 Total: -15.43 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -77.05 4.02 -73.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119930690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.289 kcal (2) G-P(sol) polarization free energy of solvation -77.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds