Wall clock time and date at job start Fri Apr 10 2020 22:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86799 * 120.00324 * 2 1 4 4 H 1.48497 * 109.47455 * 240.00157 * 3 2 1 5 5 H 1.48499 * 109.47128 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47071 * 119.99604 * 3 2 1 7 7 C 1.38651 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00312 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00283 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00212 * 185.06228 * 9 7 2 11 11 C 1.38956 * 120.03001 * 174.48883 * 10 9 7 12 12 C 1.38128 * 120.07803 * 179.97438 * 11 10 9 13 13 C 1.38192 * 120.14683 * 359.73962 * 12 11 10 14 14 C 1.38964 * 120.05403 * 0.51312 * 13 12 11 15 15 N 1.39680 * 120.03718 * 179.76968 * 14 13 12 16 16 C 1.46496 * 119.99634 * 359.44230 * 15 14 13 17 17 C 1.50703 * 109.46690 * 180.27673 * 16 15 14 18 18 C 1.39868 * 126.04147 * 269.68960 * 17 16 15 19 19 N 1.30843 * 108.20059 * 179.81882 * 18 17 16 20 20 N 1.40083 * 108.20485 * 0.44299 * 19 18 17 21 21 C 1.46502 * 126.03458 * 179.73802 * 20 19 18 22 22 C 1.53778 * 113.61365 * 194.11336 * 21 20 19 23 23 C 1.53953 * 87.01989 * 220.04920 * 22 21 20 24 24 C 1.53780 * 113.61389 * 96.50485 * 21 20 19 25 25 C 1.34943 * 107.92561 * 359.71416 * 20 19 18 26 26 C 1.38721 * 120.03388 * 354.46089 * 10 9 7 27 27 H 0.96998 * 119.99841 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.96523 * 359.95109 * 11 10 9 29 29 H 1.08008 * 119.92856 * 179.97438 * 12 11 10 30 30 H 1.07992 * 119.97601 * 180.27823 * 13 12 11 31 31 H 0.96999 * 119.99645 * 179.72263 * 15 14 13 32 32 H 1.09000 * 109.47744 * 300.27483 * 16 15 14 33 33 H 1.08994 * 109.47500 * 60.28296 * 16 15 14 34 34 H 1.08000 * 125.89689 * 0.02562 * 18 17 16 35 35 H 1.08999 * 112.85058 * 325.30724 * 21 20 19 36 36 H 1.09007 * 113.61441 * 334.56351 * 22 21 20 37 37 H 1.08996 * 113.61809 * 105.47219 * 22 21 20 38 38 H 1.09006 * 113.53982 * 270.81000 * 23 22 21 39 39 H 1.09000 * 113.74925 * 139.94332 * 23 22 21 40 40 H 1.09000 * 113.61409 * 254.52928 * 24 21 20 41 41 H 1.09001 * 113.61335 * 25.42982 * 24 21 20 42 42 H 1.07999 * 126.12390 * 180.02562 * 25 20 19 43 43 H 1.07998 * 120.06974 * 0.04533 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1033 1.6963 1.2126 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 1.4352 -4.7348 0.2274 12 6 2.1824 -5.8916 0.3350 13 6 3.5629 -5.8304 0.3165 14 6 4.2036 -4.6027 0.2003 15 7 5.5989 -4.5408 0.1865 16 6 6.3878 -5.7694 0.3070 17 6 7.8555 -5.4293 0.2715 18 6 8.6569 -5.3608 -0.8728 19 7 9.8691 -5.0344 -0.5038 20 7 9.8796 -4.8947 0.8900 21 6 11.0397 -4.5418 1.7121 22 6 10.8311 -4.7973 3.2140 23 6 11.5742 -3.4717 3.4608 24 6 11.1190 -3.0448 2.0553 25 6 8.6323 -5.1421 1.3416 26 6 3.4554 -3.4388 0.0921 27 1 -0.4850 0.8400 -0.0004 28 1 0.3565 -4.7866 0.2383 29 1 1.6866 -6.8464 0.4299 30 1 4.1443 -6.7369 0.3963 31 1 6.0455 -3.6840 0.1013 32 1 6.1517 -6.2619 1.2502 33 1 6.1495 -6.4369 -0.5211 34 1 8.3307 -5.5424 -1.8862 35 1 11.9729 -4.9510 1.3251 36 1 9.7849 -4.7747 3.5196 37 1 11.3630 -5.6729 3.5861 38 1 12.6540 -3.5887 3.5533 39 1 11.1437 -2.8695 4.2609 40 1 11.8830 -2.5078 1.4932 41 1 10.1518 -2.5424 2.0434 42 1 8.3114 -5.1153 2.3725 43 1 3.9509 -2.4838 -0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119953458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:14 Heat of formation + Delta-G solvation = 103.914507 kcal Electronic energy + Delta-G solvation = -24411.709892 eV Core-core repulsion = 20846.211952 eV Total energy + Delta-G solvation = -3565.497941 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62336 -39.04735 -38.82278 -36.94257 -34.71217 -32.19170 -31.86043 -31.01740 -29.01223 -28.04166 -26.36938 -26.07053 -25.16946 -24.48552 -21.76172 -21.60348 -20.87912 -20.24534 -19.58967 -17.92771 -17.64369 -17.07961 -16.21389 -15.56414 -15.20467 -14.94043 -14.80897 -14.48792 -14.14752 -14.09418 -13.87994 -13.46136 -13.42321 -13.17829 -12.91458 -12.72344 -12.64248 -12.30720 -12.10240 -11.84981 -11.57917 -11.33477 -11.20158 -11.09816 -10.91068 -10.74459 -10.65667 -10.55140 -10.34766 -9.59228 -9.33048 -9.30363 -8.70074 -8.65897 -7.26936 -6.67388 -6.35789 -3.94784 1.65099 2.23428 2.46198 2.54281 2.65647 3.17360 3.19022 3.21010 3.72520 3.93586 4.03585 4.14703 4.20508 4.23534 4.51276 4.66988 4.77980 4.95986 5.07022 5.08787 5.13929 5.21392 5.29097 5.31595 5.37271 5.42230 5.44901 5.60457 5.74093 5.75648 5.80018 6.07475 6.08500 6.35383 6.44586 6.46140 6.73311 6.74364 6.79775 7.12968 7.21721 7.46769 7.52082 7.56959 7.76265 8.11095 8.12682 8.32396 9.10524 9.84176 10.82758 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.002988 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.335668 B = 9368.533720 C =11010.767330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.038 3.962 3 Si 0.938 3.062 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.388 4.388 8 H 0.090 0.910 9 O -0.180 6.180 10 C 0.189 3.811 11 C -0.238 4.238 12 C -0.040 4.040 13 C -0.280 4.280 14 C 0.250 3.750 15 N -0.751 5.751 16 C 0.212 3.788 17 C -0.251 4.251 18 C 0.063 3.937 19 N -0.300 5.300 20 N -0.362 5.362 21 C 0.136 3.864 22 C -0.146 4.146 23 C -0.137 4.137 24 C -0.148 4.148 25 C 0.074 3.926 26 C -0.303 4.303 27 H 0.269 0.731 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.394 0.606 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.183 0.817 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.172 0.828 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.258 -10.064 5.716 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.165 4.165 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.107 0.893 9 O -0.083 6.083 10 C 0.135 3.865 11 C -0.258 4.258 12 C -0.059 4.059 13 C -0.303 4.303 14 C 0.149 3.851 15 N -0.383 5.383 16 C 0.086 3.914 17 C -0.263 4.263 18 C -0.124 4.124 19 N -0.120 5.120 20 N -0.143 5.143 21 C 0.034 3.966 22 C -0.185 4.185 23 C -0.175 4.175 24 C -0.187 4.187 25 C -0.073 4.073 26 C -0.327 4.327 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.227 0.773 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.200 0.800 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.189 0.811 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 23.214 -9.764 5.390 25.754 hybrid contribution -0.094 1.012 0.201 1.036 sum 23.120 -8.751 5.591 25.345 Atomic orbital electron populations 1.70031 1.05886 1.27538 1.46703 1.25247 0.95793 0.98687 0.96818 0.85826 0.78698 0.80097 0.79043 1.19616 1.20336 1.19672 1.21244 0.91690 0.80946 1.52559 0.89292 1.83984 1.34218 1.11452 1.78624 1.19073 0.89528 0.87811 0.90109 1.20028 0.99300 0.90382 1.16136 1.20374 0.93050 0.96459 0.96041 1.20072 0.94400 0.95059 1.20771 1.17483 0.82329 0.93491 0.91807 1.44700 1.02535 1.07910 1.83117 1.19283 0.83849 0.87422 1.00825 1.20144 0.97306 1.16582 0.92294 1.23865 0.90267 0.98363 0.99863 1.77370 1.21548 1.23470 0.89586 1.48674 1.07654 1.53058 1.04958 1.22999 0.87720 0.96932 0.88944 1.23453 1.02615 0.99425 0.92973 1.22736 1.00822 0.96571 0.97405 1.23452 1.03162 0.95282 0.96807 1.22299 0.85007 0.99871 1.00168 1.20495 0.93699 0.97207 1.21284 0.92127 0.87013 0.87275 0.87803 0.77250 0.92407 0.91999 0.79990 0.86142 0.88788 0.89830 0.89334 0.90004 0.90208 0.89139 0.81057 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.96 13.67 55.48 0.76 -25.20 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.39 -11.13 9.49 30.88 0.29 -10.84 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 9 O -0.18 -5.28 9.76 0.05 0.00 -5.28 16 10 C 0.19 4.75 6.64 -39.14 -0.26 4.49 16 11 C -0.24 -5.27 9.99 -39.36 -0.39 -5.66 16 12 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 13 C -0.28 -5.02 9.31 -39.33 -0.37 -5.39 16 14 C 0.25 4.74 6.65 -83.81 -0.56 4.19 16 15 N -0.75 -11.42 5.72 -59.83 -0.34 -11.76 16 16 C 0.21 2.57 5.39 -5.19 -0.03 2.54 16 17 C -0.25 -2.83 5.47 -105.05 -0.57 -3.41 16 18 C 0.06 0.73 11.96 -17.36 -0.21 0.53 16 19 N -0.30 -3.76 12.58 30.63 0.39 -3.38 16 20 N -0.36 -3.75 3.81 -54.07 -0.21 -3.96 16 21 C 0.14 1.00 5.02 -67.12 -0.34 0.66 16 22 C -0.15 -0.76 7.46 -25.83 -0.19 -0.95 16 23 C -0.14 -0.64 8.09 -25.83 -0.21 -0.84 16 24 C -0.15 -0.99 7.88 -25.92 -0.20 -1.19 16 25 C 0.07 0.74 10.60 -17.22 -0.18 0.56 16 26 C -0.30 -6.82 9.01 -39.20 -0.35 -7.18 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.11 2.41 8.06 -52.48 -0.42 1.98 16 29 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.10 1.58 6.72 -52.49 -0.35 1.23 16 31 H 0.39 5.90 8.47 -40.82 -0.35 5.56 16 32 H 0.06 0.68 7.95 -51.93 -0.41 0.26 16 33 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 34 H 0.18 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.49 6.32 -51.93 -0.33 0.17 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.17 1.34 6.69 -52.49 -0.35 0.99 16 43 H 0.12 2.79 5.63 -52.49 -0.30 2.50 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -33.39 361.17 -8.76 -42.15 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.71 Total: 8.66 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -4.07 Total: -22.66 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.60 Total: -44.29 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: 0.00 Total: -5.28 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.39 -8.76 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119953458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.063 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds