Wall clock time and date at job start Fri Apr 10 2020 22:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86799 * 120.00324 * 2 1 4 4 H 1.48497 * 109.47455 * 240.00157 * 3 2 1 5 5 H 1.48499 * 109.47128 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47071 * 119.99604 * 3 2 1 7 7 C 1.38651 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00312 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00283 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00212 * 185.06228 * 9 7 2 11 11 C 1.38956 * 120.03001 * 174.48883 * 10 9 7 12 12 C 1.38128 * 120.07803 * 179.97438 * 11 10 9 13 13 C 1.38192 * 120.14683 * 359.73962 * 12 11 10 14 14 C 1.38964 * 120.05403 * 0.51312 * 13 12 11 15 15 N 1.39680 * 120.03718 * 179.76968 * 14 13 12 16 16 C 1.46496 * 119.99634 * 359.44230 * 15 14 13 17 17 C 1.50703 * 109.46690 * 180.27673 * 16 15 14 18 18 C 1.39868 * 126.04147 * 269.68960 * 17 16 15 19 19 N 1.30843 * 108.20059 * 179.81882 * 18 17 16 20 20 N 1.40083 * 108.20485 * 0.44299 * 19 18 17 21 21 C 1.46502 * 126.03458 * 179.73802 * 20 19 18 22 22 C 1.53778 * 113.61365 * 194.11336 * 21 20 19 23 23 C 1.53953 * 87.01989 * 220.04920 * 22 21 20 24 24 C 1.53780 * 113.61389 * 96.50485 * 21 20 19 25 25 C 1.34943 * 107.92561 * 359.71416 * 20 19 18 26 26 C 1.38721 * 120.03388 * 354.46089 * 10 9 7 27 27 H 0.96998 * 119.99841 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.96523 * 359.95109 * 11 10 9 29 29 H 1.08008 * 119.92856 * 179.97438 * 12 11 10 30 30 H 1.07992 * 119.97601 * 180.27823 * 13 12 11 31 31 H 0.96999 * 119.99645 * 179.72263 * 15 14 13 32 32 H 1.09000 * 109.47744 * 300.27483 * 16 15 14 33 33 H 1.08994 * 109.47500 * 60.28296 * 16 15 14 34 34 H 1.08000 * 125.89689 * 0.02562 * 18 17 16 35 35 H 1.08999 * 112.85058 * 325.30724 * 21 20 19 36 36 H 1.09007 * 113.61441 * 334.56351 * 22 21 20 37 37 H 1.08996 * 113.61809 * 105.47219 * 22 21 20 38 38 H 1.09006 * 113.53982 * 270.81000 * 23 22 21 39 39 H 1.09000 * 113.74925 * 139.94332 * 23 22 21 40 40 H 1.09000 * 113.61409 * 254.52928 * 24 21 20 41 41 H 1.09001 * 113.61335 * 25.42982 * 24 21 20 42 42 H 1.07999 * 126.12390 * 180.02562 * 25 20 19 43 43 H 1.07998 * 120.06974 * 0.04533 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1033 1.6963 1.2126 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 1.4352 -4.7348 0.2274 12 6 2.1824 -5.8916 0.3350 13 6 3.5629 -5.8304 0.3165 14 6 4.2036 -4.6027 0.2003 15 7 5.5989 -4.5408 0.1865 16 6 6.3878 -5.7694 0.3070 17 6 7.8555 -5.4293 0.2715 18 6 8.6569 -5.3608 -0.8728 19 7 9.8691 -5.0344 -0.5038 20 7 9.8796 -4.8947 0.8900 21 6 11.0397 -4.5418 1.7121 22 6 10.8311 -4.7973 3.2140 23 6 11.5742 -3.4717 3.4608 24 6 11.1190 -3.0448 2.0553 25 6 8.6323 -5.1421 1.3416 26 6 3.4554 -3.4388 0.0921 27 1 -0.4850 0.8400 -0.0004 28 1 0.3565 -4.7866 0.2383 29 1 1.6866 -6.8464 0.4299 30 1 4.1443 -6.7369 0.3963 31 1 6.0455 -3.6840 0.1013 32 1 6.1517 -6.2619 1.2502 33 1 6.1495 -6.4369 -0.5211 34 1 8.3307 -5.5424 -1.8862 35 1 11.9729 -4.9510 1.3251 36 1 9.7849 -4.7747 3.5196 37 1 11.3630 -5.6729 3.5861 38 1 12.6540 -3.5887 3.5533 39 1 11.1437 -2.8695 4.2609 40 1 11.8830 -2.5078 1.4932 41 1 10.1518 -2.5424 2.0434 42 1 8.3114 -5.1153 2.3725 43 1 3.9509 -2.4838 -0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119953458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:14 Heat of formation + Delta-G solvation = 83.206563 kcal Electronic energy + Delta-G solvation = -24412.607856 eV Core-core repulsion = 20846.211952 eV Total energy + Delta-G solvation = -3566.395905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.40043 -40.69103 -39.47445 -38.61220 -36.10839 -34.20037 -32.78432 -32.04455 -30.57106 -29.48492 -27.29458 -26.99377 -26.68611 -25.35299 -23.35056 -22.40342 -22.20903 -21.34990 -20.18632 -19.71488 -19.02741 -18.27667 -17.02835 -16.76628 -16.67354 -16.22995 -15.93398 -15.64869 -15.56617 -15.46045 -15.22788 -14.95112 -14.44859 -14.25654 -14.05633 -13.85289 -13.49707 -13.44559 -13.37140 -13.07447 -12.85526 -12.50076 -12.45147 -12.31958 -12.19333 -12.01544 -11.69005 -11.62971 -11.43133 -11.26366 -10.89857 -10.55464 -10.39759 -9.49814 -9.04834 -8.43491 -8.14912 -6.11449 0.82460 0.85659 0.98582 1.33842 1.45779 1.50282 1.53733 1.64711 2.19619 2.89473 2.92303 3.21247 3.32151 3.46845 3.64127 3.71346 3.77722 3.83142 3.94184 4.20669 4.27847 4.42967 4.47531 4.51223 4.62062 4.66929 4.68217 4.75518 4.78806 4.84133 4.90788 4.96791 5.01271 5.13213 5.18293 5.19226 5.20430 5.33185 5.53160 5.63893 5.80279 5.86602 6.07425 6.09250 6.17634 6.68926 6.70026 6.92170 7.02165 7.86711 8.80205 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.002988 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.335668 B = 9368.533720 C =11010.767330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.024 4.024 3 Si 1.016 2.984 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.410 4.410 8 H 0.097 0.903 9 O -0.234 6.234 10 C 0.151 3.849 11 C -0.264 4.264 12 C -0.026 4.026 13 C -0.262 4.262 14 C 0.259 3.741 15 N -0.741 5.741 16 C 0.213 3.787 17 C -0.265 4.265 18 C 0.055 3.945 19 N -0.333 5.333 20 N -0.361 5.361 21 C 0.121 3.879 22 C -0.138 4.138 23 C -0.126 4.126 24 C -0.152 4.152 25 C 0.080 3.920 26 C -0.318 4.318 27 H 0.272 0.728 28 H 0.105 0.895 29 H 0.152 0.848 30 H 0.146 0.854 31 H 0.394 0.606 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.194 0.806 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.196 0.804 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.236 -11.857 6.935 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.836 3.164 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.115 0.885 9 O -0.140 6.140 10 C 0.100 3.900 11 C -0.285 4.285 12 C -0.044 4.044 13 C -0.285 4.285 14 C 0.154 3.846 15 N -0.370 5.370 16 C 0.089 3.911 17 C -0.277 4.277 18 C -0.131 4.131 19 N -0.154 5.154 20 N -0.142 5.142 21 C 0.020 3.980 22 C -0.176 4.176 23 C -0.164 4.164 24 C -0.191 4.191 25 C -0.068 4.068 26 C -0.342 4.342 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.170 0.830 30 H 0.164 0.836 31 H 0.228 0.772 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.210 0.790 35 H 0.143 0.857 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.213 0.787 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 26.275 -11.615 6.610 29.478 hybrid contribution -0.795 1.261 -0.150 1.498 sum 25.479 -10.354 6.461 28.251 Atomic orbital electron populations 1.70183 1.07962 1.28710 1.49294 1.26551 0.96833 1.02620 0.96083 0.84686 0.77423 0.74547 0.79768 1.18391 1.19449 1.18262 1.21729 0.92333 0.81615 1.52924 0.88539 1.83942 1.35921 1.12641 1.81508 1.19655 0.90878 0.87696 0.91779 1.20258 0.99544 0.90790 1.17874 1.20839 0.93450 0.96750 0.93383 1.20571 0.94426 0.95912 1.17568 1.17556 0.83933 0.92731 0.90380 1.44893 1.01209 1.09428 1.81467 1.19436 0.83819 0.85927 1.01900 1.20074 0.96922 1.18122 0.92579 1.24138 0.90218 0.98043 1.00688 1.77324 1.22273 1.24653 0.91106 1.48954 1.08541 1.52205 1.04471 1.23397 0.87195 0.97480 0.89895 1.23456 1.02994 1.00291 0.90866 1.22731 1.01741 0.95974 0.95939 1.23441 1.02401 0.94752 0.98496 1.22697 0.84773 0.98304 1.01053 1.20495 0.93073 0.98212 1.22467 0.91920 0.87726 0.82991 0.83648 0.77212 0.90853 0.91053 0.78951 0.85688 0.88671 0.88394 0.87814 0.89540 0.90325 0.90775 0.78723 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.23 13.67 21.61 0.30 -57.93 16 2 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 3 Si 1.02 44.22 29.55 68.60 2.03 46.24 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.41 -24.79 9.49 67.92 0.64 -24.15 16 8 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 9 O -0.23 -14.67 9.76 -22.75 -0.22 -14.90 16 10 C 0.15 7.91 6.64 22.56 0.15 8.06 16 11 C -0.26 -11.83 9.99 22.42 0.22 -11.61 16 12 C -0.03 -0.88 10.03 22.23 0.22 -0.66 16 13 C -0.26 -8.36 9.31 22.43 0.21 -8.15 16 14 C 0.26 9.27 6.65 38.20 0.25 9.52 16 15 N -0.74 -20.62 5.72 -343.20 -1.96 -22.59 16 16 C 0.21 4.38 5.39 85.63 0.46 4.84 16 17 C -0.26 -5.28 5.47 -20.14 -0.11 -5.39 16 18 C 0.06 1.19 11.96 85.23 1.02 2.21 16 19 N -0.33 -7.95 12.58 -57.02 -0.72 -8.67 16 20 N -0.36 -6.82 3.81 -324.99 -1.24 -8.06 16 21 C 0.12 1.54 5.02 45.52 0.23 1.77 16 22 C -0.14 -1.03 7.46 31.18 0.23 -0.79 16 23 C -0.13 -0.84 8.09 31.18 0.25 -0.59 16 24 C -0.15 -1.81 7.88 31.12 0.25 -1.56 16 25 C 0.08 1.40 10.60 83.54 0.89 2.29 16 26 C -0.32 -14.59 9.01 22.52 0.20 -14.38 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 29 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.15 3.52 6.72 -2.91 -0.02 3.50 16 31 H 0.39 11.16 8.47 -92.71 -0.79 10.38 16 32 H 0.07 1.35 7.95 -2.39 -0.02 1.33 16 33 H 0.07 1.39 7.94 -2.39 -0.02 1.37 16 34 H 0.19 3.46 8.06 -2.91 -0.02 3.43 16 35 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.09 0.70 6.32 -2.38 -0.02 0.69 16 37 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 39 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.20 2.35 6.69 -2.91 -0.02 2.33 16 43 H 0.11 5.16 5.63 -2.91 -0.02 5.14 16 Total: -1.00 -77.83 361.17 4.02 -73.81 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.25 Total: 31.62 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 5.59 Total: -39.53 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -3.62 Total: -97.24 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.22 Total: -14.90 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -77.83 4.02 -73.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119953458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.012 kcal (2) G-P(sol) polarization free energy of solvation -77.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds