Wall clock time and date at job start Fri Apr 10 2020 22:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86801 * 119.99536 * 2 1 4 4 H 1.48500 * 109.47293 * 269.99999 * 3 2 1 5 5 H 1.48500 * 109.47056 * 29.99936 * 3 2 1 6 6 H 1.48501 * 109.47090 * 150.00034 * 3 2 1 7 7 C 1.38648 * 120.00562 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00122 * 359.97438 * 7 2 1 9 9 O 1.34835 * 120.00253 * 180.02562 * 7 2 1 10 10 C 1.35750 * 116.99709 * 185.05789 * 9 7 2 11 11 C 1.38867 * 120.07389 * 354.46148 * 10 9 7 12 12 C 1.38098 * 119.93254 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.07073 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.93229 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.46852 * 90.00714 * 14 13 12 16 16 C 1.44845 * 110.99794 * 293.95314 * 15 14 13 17 17 C 1.53734 * 110.72236 * 204.63768 * 16 15 14 18 18 C 1.52049 * 106.85015 * 281.54927 * 17 16 15 19 19 N 1.30039 * 127.11740 * 244.01469 * 18 17 16 20 20 C 1.34428 * 108.98752 * 179.72727 * 19 18 17 21 21 C 1.35001 * 108.06095 * 0.10847 * 20 19 18 22 22 N 1.34606 * 124.08845 * 63.97286 * 18 17 16 23 23 C 1.47642 * 124.56334 * 0.45642 * 22 18 17 24 24 C 1.44730 * 111.00197 * 68.20834 * 15 14 13 25 25 C 1.38305 * 120.13363 * 0.25450 * 13 12 11 26 26 C 1.38095 * 120.06928 * 359.45113 * 25 13 12 27 27 H 0.96998 * 120.00648 * 359.97438 * 1 2 3 28 28 H 1.08008 * 120.03867 * 0.02562 * 11 10 9 29 29 H 1.08003 * 119.96453 * 180.02562 * 12 11 10 30 30 H 1.09000 * 109.47602 * 330.00180 * 14 13 12 31 31 H 1.09003 * 109.47295 * 210.00125 * 14 13 12 32 32 H 1.08996 * 109.23104 * 84.31349 * 16 15 14 33 33 H 1.09002 * 109.22475 * 324.94752 * 16 15 14 34 34 H 1.08997 * 109.98364 * 40.88464 * 17 16 15 35 35 H 1.09005 * 109.97945 * 162.21918 * 17 16 15 36 36 H 1.08005 * 125.96535 * 180.08325 * 20 19 18 37 37 H 1.08005 * 126.79021 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.93656 * 175.84734 * 23 22 18 39 39 H 1.08994 * 110.00761 * 54.65467 * 23 22 18 40 40 H 1.08997 * 109.19446 * 275.52493 * 24 15 14 41 41 H 1.09003 * 109.19535 * 34.84761 * 24 15 14 42 42 H 1.08002 * 119.95905 * 179.70367 * 25 13 12 43 43 H 1.07997 * 120.03223 * 180.27821 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4969 2.0466 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5470 1.4404 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4690 -2.1360 0.0014 9 8 3.3573 -1.2006 0.0011 10 6 3.9736 -2.4054 -0.1051 11 6 3.2238 -3.5742 -0.0921 12 6 3.8538 -4.7983 -0.1997 13 6 5.2302 -4.8611 -0.3198 14 6 5.9145 -6.1987 -0.4365 15 7 6.0195 -6.5730 -1.8531 16 6 4.7100 -6.8047 -2.4271 17 6 4.8059 -7.7462 -3.6386 18 6 5.2997 -6.9100 -4.8086 19 7 4.6585 -6.6424 -5.9078 20 6 5.4326 -5.8687 -6.6884 21 6 6.5982 -5.6550 -6.0416 22 7 6.5078 -6.3183 -4.8562 23 6 7.5249 -6.4036 -3.7895 24 6 6.9403 -5.7028 -2.5527 25 6 5.9802 -3.6992 -0.3272 26 6 5.3556 -2.4717 -0.2261 27 1 -0.4851 0.8400 0.0004 28 1 2.1489 -3.5260 0.0021 29 1 3.2711 -5.7076 -0.1901 30 1 5.3339 -6.9517 0.0963 31 1 6.9125 -6.1353 -0.0026 32 1 4.2838 -5.8532 -2.7448 33 1 4.0623 -7.2538 -1.6741 34 1 5.5124 -8.5498 -3.4309 35 1 3.8242 -8.1617 -3.8661 36 1 5.1683 -5.4854 -7.6630 37 1 7.4368 -5.0734 -6.3950 38 1 8.4382 -5.8994 -4.1055 39 1 7.7375 -7.4476 -3.5595 40 1 6.4134 -4.8020 -2.8671 41 1 7.7530 -5.4265 -1.8809 42 1 7.0553 -3.7517 -0.4163 43 1 5.9415 -1.5646 -0.2364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137121394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:18 Heat of formation + Delta-G solvation = 74.937294 kcal Electronic energy + Delta-G solvation = -25798.231797 eV Core-core repulsion = 22231.477310 eV Total energy + Delta-G solvation = -3566.754487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27363 -39.59987 -38.33179 -36.35782 -34.15527 -32.74265 -32.35085 -30.55886 -30.03315 -29.31601 -27.35786 -25.62047 -24.42989 -24.26785 -22.09281 -21.49954 -21.20615 -20.23711 -19.46047 -17.96347 -17.48402 -17.27275 -15.86225 -15.77610 -15.35237 -15.11614 -14.86640 -14.32832 -14.19121 -14.05437 -13.97851 -13.79423 -13.57259 -13.05186 -12.76414 -12.60735 -12.49607 -12.40883 -12.23874 -12.03173 -11.69653 -11.47514 -11.30925 -11.19851 -11.07862 -10.78129 -10.71871 -10.22206 -9.95464 -9.61757 -9.46311 -8.93256 -8.41940 -8.36864 -8.22944 -7.41359 -6.47689 -4.14795 2.01623 2.06066 2.08456 2.73719 3.17189 3.18170 3.21247 3.34896 3.69457 4.18001 4.31135 4.39087 4.57083 4.62025 4.76385 4.76696 4.95033 5.00577 5.03890 5.16851 5.23051 5.29876 5.34489 5.42785 5.49197 5.54222 5.63816 5.67080 5.73274 5.81265 5.88210 6.01708 6.04574 6.22508 6.31194 6.45995 6.67559 6.76821 6.89521 6.98706 7.04999 7.15492 7.19706 7.28307 7.51997 7.72446 7.96543 8.15542 8.87009 9.47894 10.59729 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.003483 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.668160 B = 8037.527137 C = 8629.883106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.162 3.838 11 C -0.221 4.221 12 C -0.060 4.060 13 C -0.219 4.219 14 C 0.123 3.877 15 N -0.570 5.570 16 C 0.078 3.922 17 C -0.031 4.031 18 C 0.209 3.791 19 N -0.494 5.494 20 C -0.035 4.035 21 C -0.061 4.061 22 N -0.454 5.454 23 C 0.105 3.895 24 C 0.063 3.937 25 C -0.067 4.067 26 C -0.194 4.194 27 H 0.280 0.720 28 H 0.133 0.867 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.047 -14.032 -5.412 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.109 3.891 11 C -0.240 4.240 12 C -0.079 4.079 13 C -0.221 4.221 14 C -0.003 4.003 15 N -0.294 5.294 16 C -0.051 4.051 17 C -0.071 4.071 18 C -0.054 4.054 19 N -0.212 5.212 20 C -0.183 4.183 21 C -0.194 4.194 22 N -0.136 5.136 23 C -0.018 4.018 24 C -0.066 4.066 25 C -0.086 4.086 26 C -0.214 4.214 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.126 0.874 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.184 0.816 37 H 0.189 0.811 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.438 -14.316 -5.539 21.770 hybrid contribution 0.582 2.002 0.022 2.085 sum 16.020 -12.314 -5.516 20.945 Atomic orbital electron populations 1.69639 1.05572 1.28614 1.47542 1.24470 0.95032 0.98853 0.95541 0.86186 0.80313 0.81424 0.79012 1.19840 1.20642 1.18397 1.20772 0.76789 0.96692 1.52448 0.87601 1.83571 1.22729 1.25795 1.79916 1.19139 0.91709 0.85538 0.92674 1.21288 1.01174 0.91929 1.09579 1.20672 0.93496 0.96648 0.97103 1.20036 0.94213 0.95537 1.12321 1.20878 1.00027 0.92670 0.86758 1.58271 1.14707 1.53009 1.03412 1.21653 0.89085 0.98723 0.95627 1.20657 1.02538 0.95694 0.88211 1.23495 0.83678 1.00916 0.97336 1.70190 1.31224 1.17032 1.02775 1.22412 0.91804 1.02962 1.01161 1.22573 1.02811 1.05624 0.88413 1.45567 1.14601 1.38210 1.15264 1.22572 0.89983 1.03534 0.85701 1.21907 0.96297 0.94025 0.94367 1.20468 0.97984 0.91469 0.98670 1.20199 0.92022 0.97868 1.11265 0.90937 0.84967 0.87390 0.90421 0.90687 0.93737 0.89655 0.89248 0.88119 0.81646 0.81095 0.88469 0.88323 0.93418 0.89137 0.87320 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.28 13.96 55.48 0.77 -24.51 16 2 C 0.06 1.82 5.49 -17.52 -0.10 1.72 16 3 Si 0.91 21.63 28.62 -169.99 -4.86 16.76 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.39 -11.02 9.95 30.88 0.31 -10.72 16 8 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 9 O -0.22 -5.67 8.59 0.03 0.00 -5.67 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.22 -4.65 9.17 -39.40 -0.36 -5.01 16 12 C -0.06 -1.02 8.65 -39.61 -0.34 -1.37 16 13 C -0.22 -3.23 4.53 -104.58 -0.47 -3.70 16 14 C 0.12 1.34 5.29 -4.98 -0.03 1.31 16 15 N -0.57 -5.94 4.04 -238.65 -0.96 -6.91 16 16 C 0.08 0.90 4.19 -4.55 -0.02 0.88 16 17 C -0.03 -0.34 6.12 -26.83 -0.16 -0.50 16 18 C 0.21 2.83 6.96 -155.53 -1.08 1.74 16 19 N -0.49 -7.77 11.26 -10.42 -0.12 -7.89 16 20 C -0.04 -0.47 11.88 -17.56 -0.21 -0.68 16 21 C -0.06 -0.70 11.66 -16.79 -0.20 -0.90 16 22 N -0.45 -5.28 2.76 -112.46 -0.31 -5.59 16 23 C 0.10 0.87 6.62 -3.05 -0.02 0.85 16 24 C 0.06 0.62 4.35 -4.62 -0.02 0.60 16 25 C -0.07 -1.05 8.74 -39.61 -0.35 -1.39 16 26 C -0.19 -3.73 9.99 -39.40 -0.39 -4.12 16 27 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.13 2.98 5.64 -52.48 -0.30 2.68 16 29 H 0.11 1.58 7.63 -52.48 -0.40 1.18 16 30 H 0.08 0.79 7.82 -51.93 -0.41 0.38 16 31 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 32 H 0.04 0.68 7.56 -51.93 -0.39 0.29 16 33 H 0.09 0.89 7.21 -51.93 -0.37 0.52 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.17 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.17 1.39 8.06 -52.48 -0.42 0.96 16 38 H 0.10 0.58 8.13 -51.93 -0.42 0.16 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.64 7.76 -51.93 -0.40 0.24 16 41 H 0.09 0.74 7.34 -51.93 -0.38 0.36 16 42 H 0.11 1.36 7.80 -52.49 -0.41 0.95 16 43 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -32.20 347.78 -9.79 -41.99 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.84 Total: 4.42 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -3.70 Total: -17.85 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.62 Total: -44.90 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: 0.00 Total: -5.67 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.86 Total: 16.76 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.20 -9.79 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137121394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.930 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds