Wall clock time and date at job start Fri Apr 10 2020 22:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38223 * 120.00958 * 2 1 4 4 C 1.38227 * 120.02289 * 180.26963 * 3 2 1 5 5 C 1.38271 * 120.05191 * 359.45323 * 4 3 2 6 6 C 1.38179 * 120.02367 * 0.27145 * 5 4 3 7 7 C 1.50692 * 120.01298 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.47171 * 254.61845 * 7 6 5 9 9 C 1.46900 * 111.00101 * 199.96509 * 8 7 6 10 10 C 1.50710 * 109.47057 * 67.25815 * 9 8 7 11 11 H 1.07998 * 119.99650 * 5.19593 * 10 9 8 12 12 C 1.37874 * 119.99794 * 185.19642 * 10 9 8 13 13 N 1.31516 * 120.00117 * 5.09763 * 12 10 9 14 14 Si 1.86798 * 120.00039 * 185.09899 * 12 10 9 15 15 H 1.48503 * 109.46974 * 5.00136 * 14 12 10 16 16 H 1.48492 * 109.47364 * 125.00029 * 14 12 10 17 17 H 1.48502 * 109.47402 * 245.00483 * 14 12 10 18 18 C 1.46891 * 110.99967 * 76.00799 * 8 7 6 19 19 C 1.50704 * 109.47056 * 189.99915 * 18 8 7 20 20 C 1.38231 * 120.00111 * 269.72685 * 19 18 8 21 21 C 1.38237 * 119.99593 * 179.76288 * 20 19 18 22 22 C 1.38232 * 120.00058 * 0.51836 * 21 20 19 23 23 C 1.38237 * 120.00025 * 359.73453 * 22 21 20 24 24 C 1.38230 * 120.00115 * 0.02562 * 23 22 21 25 25 C 1.38436 * 120.01326 * 179.71794 * 2 1 3 26 26 F 1.35099 * 120.02479 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.47401 * 275.11790 * 1 2 3 28 28 H 1.09002 * 109.47143 * 35.12138 * 1 2 3 29 29 H 1.09001 * 109.46880 * 155.11876 * 1 2 3 30 30 H 1.07996 * 119.99380 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.97747 * 179.72365 * 4 3 2 32 32 H 1.07995 * 119.98807 * 180.29290 * 5 4 3 33 33 H 1.09005 * 109.47237 * 14.61592 * 7 6 5 34 34 H 1.09005 * 109.47318 * 134.61674 * 7 6 5 35 35 H 1.08999 * 109.46899 * 187.25408 * 9 8 7 36 36 H 1.08996 * 109.47323 * 307.25887 * 9 8 7 37 37 H 0.97005 * 120.00048 * 179.97438 * 13 12 10 38 38 H 1.09003 * 109.47493 * 310.00211 * 18 8 7 39 39 H 1.09007 * 109.47039 * 70.00328 * 18 8 7 40 40 H 1.07993 * 119.99967 * 0.02562 * 20 19 18 41 41 H 1.07997 * 120.00026 * 180.22934 * 21 20 19 42 42 H 1.07999 * 119.99955 * 179.72288 * 22 21 20 43 43 H 1.08003 * 119.99656 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.00038 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1973 -0.0056 5 6 4.2733 0.0006 0.0001 6 6 3.5843 -1.1971 0.0059 7 6 4.3396 -2.5011 0.0116 8 7 4.2666 -3.1151 -1.3210 9 6 4.5576 -4.5535 -1.2546 10 6 3.4549 -5.2550 -0.5041 11 1 2.5812 -4.7041 -0.1886 12 6 3.5615 -6.6000 -0.2204 13 7 4.6670 -7.2486 -0.5150 14 14 2.1357 -7.5012 0.5823 15 1 0.9736 -6.5841 0.6995 16 1 1.7597 -8.6728 -0.2488 17 1 2.5402 -7.9628 1.9346 18 6 5.1685 -2.4384 -2.2625 19 6 4.8915 -2.9253 -3.6615 20 6 5.5744 -4.0185 -4.1609 21 6 5.3167 -4.4680 -5.4424 22 6 4.3838 -3.8178 -6.2284 23 6 3.7046 -2.7214 -5.7309 24 6 3.9587 -2.2749 -4.4476 25 6 2.1995 -1.1987 0.0059 26 9 1.5247 -2.3691 0.0122 27 1 -0.3634 0.0917 1.0235 28 1 -0.3633 0.8406 -0.5912 29 1 -0.3633 -0.9323 -0.4324 30 1 1.6584 2.1322 0.0004 31 1 4.1200 2.1329 -0.0101 32 1 5.3533 0.0021 0.0005 33 1 5.3823 -2.3160 0.2697 34 1 3.8973 -3.1740 0.7464 35 1 4.6239 -4.9577 -2.2646 36 1 5.5047 -4.7091 -0.7380 37 1 4.7422 -8.1949 -0.3151 38 1 5.0042 -1.3620 -2.2131 39 1 6.2025 -2.6606 -1.9985 40 1 6.3062 -4.5239 -3.5483 41 1 5.8476 -5.3243 -5.8313 42 1 4.1857 -4.1663 -7.2313 43 1 2.9760 -2.2132 -6.3452 44 1 3.4284 -1.4181 -4.0591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137672772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:21 Heat of formation + Delta-G solvation = 2.890080 kcal Electronic energy + Delta-G solvation = -26056.381683 eV Core-core repulsion = 22466.583032 eV Total energy + Delta-G solvation = -3589.798650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.154 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.25843 -39.23486 -38.73779 -36.44058 -33.03450 -32.52016 -31.41616 -30.48548 -30.17912 -27.32139 -26.80912 -26.00424 -23.91295 -22.23561 -21.71514 -21.44968 -20.70740 -19.73667 -17.08362 -16.53451 -16.33605 -15.98850 -15.33398 -15.28366 -14.90360 -14.72075 -14.41777 -14.26549 -13.71534 -13.46711 -13.30446 -13.21530 -12.97210 -12.82158 -12.55948 -12.29300 -12.10863 -12.03208 -11.83771 -11.62563 -11.43370 -11.29989 -10.82543 -10.78326 -10.62784 -10.52362 -10.49050 -10.29121 -9.82924 -9.15332 -8.56776 -8.46805 -8.36656 -8.27122 -8.21702 -7.26378 -5.98432 -3.97119 1.38935 1.45281 1.81945 1.87298 3.34209 3.41943 3.49276 3.77036 4.21093 4.49402 4.62875 4.85226 4.97893 5.02016 5.20696 5.26734 5.29757 5.34278 5.37625 5.44044 5.52904 5.57277 5.63267 5.65896 5.76604 5.84022 5.95103 5.98109 6.08246 6.13187 6.16217 6.37368 6.45456 6.48168 6.50302 6.51544 6.54818 6.66179 6.88780 6.93541 7.13490 7.18154 7.29638 7.36493 7.46511 7.87886 8.09870 8.18286 8.57419 9.12675 9.66391 11.12349 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.008243 B = 0.006346 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3396.037200 B = 4410.967107 C = 6562.088723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.131 4.131 3 C -0.104 4.104 4 C -0.135 4.135 5 C -0.099 4.099 6 C -0.095 4.095 7 C 0.097 3.903 8 N -0.522 5.522 9 C 0.187 3.813 10 C -0.503 4.503 11 H 0.068 0.932 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.891 3.109 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.286 1.286 18 C 0.090 3.910 19 C -0.060 4.060 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.128 4.128 24 C -0.101 4.101 25 C 0.128 3.872 26 F -0.120 7.120 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.035 0.965 34 H 0.100 0.900 35 H 0.040 0.960 36 H -0.005 1.005 37 H 0.259 0.741 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 15.783 -3.671 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.132 4.132 3 C -0.122 4.122 4 C -0.153 4.153 5 C -0.118 4.118 6 C -0.097 4.097 7 C -0.030 4.030 8 N -0.246 5.246 9 C 0.063 3.937 10 C -0.542 4.542 11 H 0.086 0.914 12 C -0.144 4.144 13 N -0.540 5.540 14 Si 0.719 3.281 15 H -0.195 1.195 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.038 4.038 19 C -0.060 4.060 20 C -0.118 4.118 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.146 4.146 24 C -0.119 4.119 25 C 0.108 3.892 26 F -0.098 7.098 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.053 0.947 34 H 0.119 0.881 35 H 0.058 0.942 36 H 0.012 0.988 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.566 15.586 -3.822 16.124 hybrid contribution -0.013 -1.025 0.695 1.238 sum -1.578 14.561 -3.127 14.976 Atomic orbital electron populations 1.20684 0.90640 1.03217 1.02301 1.19933 0.96764 0.92165 1.04304 1.20757 0.94101 0.96590 1.00750 1.21031 0.94135 0.97855 1.02297 1.20938 0.99804 0.91253 0.99809 1.20200 0.92341 0.96743 1.00415 1.20917 0.96720 0.91644 0.93738 1.62124 1.50907 1.06044 1.05536 1.19904 0.95696 0.80329 0.97818 1.21267 1.04475 0.93643 1.34789 0.91357 1.24942 0.95720 0.97658 0.96121 1.69970 1.25634 1.09450 1.48897 0.86539 0.83028 0.79706 0.78820 1.19508 1.21121 1.21190 1.21050 0.94696 0.98194 0.89885 1.19756 0.95817 0.95395 0.95061 1.21118 0.99859 0.95648 0.95221 1.21052 0.98738 0.99664 0.94600 1.21009 0.97557 0.96598 0.99576 1.21012 1.00073 0.97528 0.96015 1.20914 0.97173 1.00129 0.93730 1.17393 0.89568 0.81108 1.01155 1.91561 1.79697 1.45437 1.93106 0.91234 0.91413 0.91089 0.85849 0.86023 0.85760 0.94693 0.88138 0.94235 0.98753 0.93141 0.91290 0.95036 0.86151 0.86569 0.86849 0.86791 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.88 36.01 0.36 -0.97 16 2 C -0.13 -1.85 5.89 -104.55 -0.62 -2.46 16 3 C -0.10 -1.23 9.72 -39.59 -0.38 -1.61 16 4 C -0.13 -1.57 10.04 -39.57 -0.40 -1.97 16 5 C -0.10 -1.34 9.02 -39.59 -0.36 -1.70 16 6 C -0.10 -1.60 4.83 -104.56 -0.50 -2.10 16 7 C 0.10 1.89 4.66 -4.98 -0.02 1.87 16 8 N -0.52 -11.13 4.40 -238.95 -1.05 -12.18 16 9 C 0.19 4.80 4.53 -4.97 -0.02 4.77 16 10 C -0.50 -14.19 8.13 -34.44 -0.28 -14.47 16 11 H 0.07 1.96 7.18 -52.49 -0.38 1.58 16 12 C 0.06 1.61 5.45 -17.82 -0.10 1.52 16 13 N -0.90 -26.72 13.28 55.43 0.74 -25.98 16 14 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 15 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 18 C 0.09 1.63 4.94 -4.98 -0.02 1.60 16 19 C -0.06 -1.09 4.91 -104.62 -0.51 -1.60 16 20 C -0.10 -1.82 7.86 -39.58 -0.31 -2.13 16 21 C -0.12 -2.00 10.05 -39.58 -0.40 -2.39 16 22 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 23 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 24 C -0.10 -1.69 9.70 -39.58 -0.38 -2.07 16 25 C 0.13 2.22 7.19 -39.42 -0.28 1.94 16 26 F -0.12 -2.46 15.49 2.25 0.03 -2.42 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.07 0.92 7.50 -51.93 -0.39 0.54 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.12 1.46 8.00 -52.49 -0.42 1.04 16 33 H 0.03 0.63 7.80 -51.93 -0.41 0.22 16 34 H 0.10 2.22 6.72 -51.93 -0.35 1.87 16 35 H 0.04 1.07 5.42 -51.93 -0.28 0.79 16 36 H -0.01 -0.15 8.09 -51.93 -0.42 -0.57 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.07 1.13 6.86 -51.93 -0.36 0.77 16 39 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16 40 H 0.12 2.24 7.86 -52.49 -0.41 1.83 16 41 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 44 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -31.10 367.33 -11.15 -42.25 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.35 Total: 2.11 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -5.04 Total: -26.46 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.31 Total: -38.16 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.03 Total: -2.42 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.10 -11.15 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137672772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.136 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds