Wall clock time and date at job start Fri Apr 10 2020 22:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38268 * 119.97528 * 2 1 4 4 C 1.38181 * 120.01979 * 179.97438 * 3 2 1 5 5 C 1.38475 * 119.97633 * 0.02562 * 4 3 2 6 6 F 1.35103 * 120.02538 * 179.97438 * 5 4 3 7 7 C 1.38434 * 119.95214 * 359.70409 * 5 4 3 8 8 C 1.38218 * 119.97137 * 0.54520 * 7 5 4 9 9 C 1.50703 * 119.98797 * 179.74961 * 8 7 5 10 10 N 1.46906 * 109.47294 * 259.72679 * 9 8 7 11 11 C 1.46900 * 110.99627 * 66.04607 * 10 9 8 12 12 C 1.50700 * 109.46975 * 193.95779 * 11 10 9 13 13 H 1.08004 * 119.99897 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00122 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99964 * 179.97438 * 14 12 11 16 16 Si 1.86790 * 119.99991 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47049 * 90.00128 * 16 14 12 18 18 H 1.48496 * 109.47446 * 210.00114 * 16 14 12 19 19 H 1.48501 * 109.47355 * 330.00119 * 16 14 12 20 20 C 1.46890 * 111.00022 * 189.99833 * 10 9 8 21 21 C 1.50702 * 109.47198 * 170.00102 * 20 10 9 22 22 C 1.38234 * 119.99895 * 269.72876 * 21 20 10 23 23 C 1.38240 * 120.00062 * 180.32314 * 22 21 20 24 24 C 1.38235 * 119.99708 * 359.94741 * 23 22 21 25 25 C 1.38234 * 120.00204 * 0.02562 * 24 23 22 26 26 C 1.38230 * 119.99885 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47078 * 270.02168 * 1 2 3 28 28 H 1.09004 * 109.46596 * 30.01763 * 1 2 3 29 29 H 1.08998 * 109.47322 * 150.01973 * 1 2 3 30 30 H 1.07995 * 119.98962 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.00391 * 180.02562 * 4 3 2 32 32 H 1.08005 * 120.01833 * 180.29547 * 7 5 4 33 33 H 1.09001 * 109.47414 * 139.72796 * 9 8 7 34 34 H 1.08997 * 109.47413 * 19.72845 * 9 8 7 35 35 H 1.08999 * 109.47166 * 313.95302 * 11 10 9 36 36 H 1.08989 * 109.47225 * 73.95556 * 11 10 9 37 37 H 0.97003 * 120.00127 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.47170 * 50.00333 * 20 10 9 39 39 H 1.09001 * 109.47716 * 290.00385 * 20 10 9 40 40 H 1.08001 * 120.00279 * 0.27436 * 22 21 20 41 41 H 1.07997 * 119.99852 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.99766 * 180.02562 * 24 23 22 43 43 H 1.07992 * 119.99701 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.00356 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1977 0.0000 4 6 3.5797 1.1988 0.0005 5 6 4.2725 -0.0002 0.0005 6 9 5.6235 -0.0003 0.0005 7 6 3.5798 -1.1987 0.0062 8 6 2.1976 -1.1974 0.0004 9 6 1.4431 -2.5020 0.0009 10 7 0.9898 -2.8060 -1.3630 11 6 2.1308 -3.0624 -2.2520 12 6 1.6676 -3.0301 -3.6857 13 1 0.6294 -2.8387 -3.9136 14 6 2.5691 -3.2460 -4.7064 15 7 2.1648 -3.2183 -5.9576 16 14 4.3645 -3.5778 -4.3122 17 1 4.5743 -5.0392 -4.1523 18 1 5.2158 -3.0739 -5.4197 19 1 4.7309 -2.8842 -3.0513 20 6 0.0546 -3.9387 -1.3667 21 6 -0.5748 -4.0661 -2.7300 22 6 -1.7520 -3.3990 -3.0128 23 6 -2.3330 -3.5211 -4.2613 24 6 -1.7361 -4.3096 -5.2272 25 6 -0.5586 -4.9763 -4.9445 26 6 0.0217 -4.8549 -3.6958 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6573 2.1327 0.0004 31 1 4.1190 2.1345 0.0010 32 1 4.1190 -2.1345 0.0110 33 1 0.5797 -2.4222 0.6614 34 1 2.0971 -3.2998 0.3527 35 1 2.8905 -2.2961 -2.0983 36 1 2.5525 -4.0422 -2.0284 37 1 2.7990 -3.3698 -6.6757 38 1 -0.7232 -3.7702 -0.6218 39 1 0.5935 -4.8557 -1.1282 40 1 -2.2184 -2.7829 -2.2582 41 1 -3.2529 -3.0003 -4.4821 42 1 -2.1897 -4.4047 -6.2027 43 1 -0.0925 -5.5925 -5.6990 44 1 0.9415 -5.3761 -3.4747 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140588520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:24 Heat of formation + Delta-G solvation = 21.822384 kcal Electronic energy + Delta-G solvation = -26465.077844 eV Core-core repulsion = 22876.100160 eV Total energy + Delta-G solvation = -3588.977684 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.64887 -39.52251 -38.56325 -36.23249 -32.78598 -32.21124 -31.83071 -30.12111 -29.81814 -28.18610 -26.67707 -25.57590 -23.63772 -22.07766 -21.52641 -21.51427 -20.33688 -19.64866 -17.05490 -16.90169 -16.34411 -15.81227 -15.41383 -15.25798 -14.89566 -14.70678 -14.49225 -13.98450 -13.74410 -13.58897 -13.37181 -13.17574 -12.86834 -12.62257 -12.39887 -12.29858 -11.95353 -11.76361 -11.69266 -11.50377 -11.41738 -11.28157 -11.12967 -10.76592 -10.66391 -10.30010 -10.03827 -9.94534 -9.80505 -9.28896 -8.73648 -8.60148 -8.20135 -7.74115 -7.50004 -7.35570 -6.02239 -3.90752 1.38665 1.43312 2.41227 2.56121 3.24905 3.34397 3.38333 3.73964 4.41338 4.45563 4.65851 4.88384 4.96380 5.11742 5.16188 5.29391 5.34249 5.45417 5.60706 5.65583 5.75231 5.83047 5.85174 5.89084 5.96504 5.99608 6.07185 6.11426 6.15744 6.20712 6.33109 6.45159 6.53878 6.56018 6.69015 6.74335 6.84210 6.87742 7.04559 7.10311 7.14115 7.47096 7.55901 7.63333 7.69645 7.84488 7.93191 8.09978 8.63798 9.12510 9.56074 11.05842 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.005696 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.797116 B = 4914.258669 C = 6319.192479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.068 4.068 3 C -0.097 4.097 4 C -0.155 4.155 5 C 0.085 3.915 6 F -0.146 7.146 7 C -0.140 4.140 8 C -0.036 4.036 9 C 0.088 3.912 10 N -0.515 5.515 11 C 0.155 3.845 12 C -0.496 4.496 13 H 0.108 0.892 14 C 0.073 3.927 15 N -0.879 5.879 16 Si 0.856 3.144 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.268 1.268 20 C 0.108 3.892 21 C -0.075 4.075 22 C -0.109 4.109 23 C -0.156 4.156 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.015 4.015 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.033 0.967 36 H -0.019 1.019 37 H 0.261 0.739 38 H 0.064 0.936 39 H 0.030 0.970 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 2.638 11.811 12.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.069 4.069 3 C -0.115 4.115 4 C -0.174 4.174 5 C 0.066 3.934 6 F -0.125 7.125 7 C -0.160 4.160 8 C -0.037 4.037 9 C -0.040 4.040 10 N -0.239 5.239 11 C 0.028 3.972 12 C -0.533 4.533 13 H 0.126 0.874 14 C -0.130 4.130 15 N -0.517 5.517 16 Si 0.683 3.317 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.193 1.193 20 C -0.019 4.019 21 C -0.076 4.076 22 C -0.128 4.128 23 C -0.174 4.174 24 C -0.131 4.131 25 C -0.138 4.138 26 C -0.034 4.034 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.051 0.949 36 H -0.001 1.001 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.203 3.023 11.444 12.560 hybrid contribution 2.263 -0.615 0.056 2.346 sum -1.939 2.408 11.500 11.908 Atomic orbital electron populations 1.20853 0.90627 1.04407 1.01456 1.19773 0.96713 0.91918 0.98448 1.20840 0.92902 0.97958 0.99840 1.21008 0.95071 0.96644 1.04712 1.17616 0.76593 0.94698 1.04467 1.91463 1.29388 1.97470 1.94185 1.21030 0.94622 0.97008 1.03299 1.19468 0.91938 0.95280 0.96981 1.21045 0.97762 0.92412 0.92757 1.62114 1.17539 1.38803 1.05402 1.20355 0.88934 0.94148 0.93718 1.21585 0.98839 1.45582 0.87305 0.87441 1.24825 0.97256 0.95816 0.95103 1.69892 1.34355 1.48956 0.98498 0.87156 0.87294 0.78655 0.78560 1.20558 1.21291 1.19265 1.20850 0.94655 0.91833 0.94585 1.19236 0.94846 0.97954 0.95541 1.20587 0.96219 0.99460 0.96542 1.20686 1.00558 1.01742 0.94410 1.20814 0.96511 0.97994 0.97830 1.20657 0.95427 1.01387 0.96326 1.20565 0.94900 0.95248 0.92660 0.91966 0.91874 0.89062 0.85374 0.85305 0.85383 0.90204 0.94834 0.94949 1.00105 0.92890 0.91713 0.95205 0.87858 0.88041 0.88084 0.87758 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.26 36.01 0.33 -1.14 16 2 C -0.07 -1.00 5.88 -104.61 -0.62 -1.62 16 3 C -0.10 -1.32 9.70 -39.59 -0.38 -1.71 16 4 C -0.16 -2.22 10.03 -39.52 -0.40 -2.62 16 5 C 0.09 1.40 7.30 -39.42 -0.29 1.11 16 6 F -0.15 -2.46 17.27 2.25 0.04 -2.43 16 7 C -0.14 -2.36 8.36 -39.52 -0.33 -2.69 16 8 C -0.04 -0.58 4.61 -104.63 -0.48 -1.06 16 9 C 0.09 1.37 4.22 -4.97 -0.02 1.35 16 10 N -0.51 -9.68 3.89 -238.97 -0.93 -10.61 16 11 C 0.15 3.50 3.58 -4.98 -0.02 3.48 16 12 C -0.50 -12.83 5.92 -34.44 -0.20 -13.04 16 13 H 0.11 3.01 4.98 -52.48 -0.26 2.75 16 14 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 15 N -0.88 -25.08 13.96 55.43 0.77 -24.31 16 16 Si 0.86 21.01 27.47 -169.99 -4.67 16.34 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 20 C 0.11 1.87 5.12 -4.98 -0.03 1.85 16 21 C -0.08 -1.46 3.45 -104.62 -0.36 -1.82 16 22 C -0.11 -2.02 9.51 -39.58 -0.38 -2.40 16 23 C -0.16 -2.87 10.05 -39.58 -0.40 -3.27 16 24 C -0.11 -2.21 10.05 -39.58 -0.40 -2.60 16 25 C -0.12 -2.51 9.93 -39.59 -0.39 -2.90 16 26 C -0.01 -0.31 5.91 -39.59 -0.23 -0.55 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.09 1.31 6.34 -51.93 -0.33 0.98 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 32 H 0.13 2.11 8.03 -52.48 -0.42 1.69 16 33 H 0.08 1.04 7.07 -51.93 -0.37 0.68 16 34 H 0.03 0.51 7.98 -51.93 -0.41 0.10 16 35 H 0.03 0.78 5.01 -51.93 -0.26 0.52 16 36 H -0.02 -0.43 7.41 -51.94 -0.38 -0.81 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.06 0.94 7.87 -51.93 -0.41 0.53 16 39 H 0.03 0.51 7.96 -51.93 -0.41 0.10 16 40 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 44 H 0.11 2.36 7.66 -52.49 -0.40 1.95 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -28.88 354.86 -10.34 -39.22 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.21 Total: 4.19 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -4.69 Total: -27.75 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.16 Total: -34.92 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.88 -10.34 -39.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140588520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.040 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds