Wall clock time and date at job start Fri Apr 10 2020 22:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38218 * 119.98906 * 2 1 4 4 C 1.38446 * 119.97521 * 180.29822 * 3 2 1 5 5 F 1.35094 * 120.02662 * 179.70129 * 4 3 2 6 6 C 1.38478 * 119.94496 * 359.72257 * 4 3 2 7 7 C 1.38174 * 119.97883 * 0.02562 * 6 4 3 8 8 C 1.38230 * 119.98408 * 179.74824 * 2 1 3 9 9 C 1.50696 * 119.97439 * 359.97436 * 8 2 1 10 10 N 1.46895 * 109.46751 * 73.80406 * 9 8 2 11 11 C 1.46905 * 110.99645 * 190.97886 * 10 9 8 12 12 C 1.50706 * 109.47122 * 66.22131 * 11 10 9 13 13 H 1.08004 * 119.99799 * 5.01267 * 12 11 10 14 14 C 1.37879 * 119.99844 * 185.00983 * 12 11 10 15 15 N 1.31511 * 120.00309 * 354.69848 * 14 12 11 16 16 Si 1.86802 * 119.99674 * 174.69860 * 14 12 11 17 17 H 1.48497 * 109.47306 * 94.98937 * 16 14 12 18 18 H 1.48502 * 109.46940 * 214.99128 * 16 14 12 19 19 H 1.48497 * 109.46973 * 334.98472 * 16 14 12 20 20 C 1.46895 * 111.00803 * 67.02824 * 10 9 8 21 21 C 1.50698 * 109.47787 * 189.99985 * 20 10 9 22 22 C 1.38230 * 120.00073 * 89.99270 * 21 20 10 23 23 C 1.38241 * 119.99904 * 179.97438 * 22 21 20 24 24 C 1.38234 * 119.99863 * 0.09091 * 23 22 21 25 25 C 1.38230 * 119.99910 * 359.86807 * 24 23 22 26 26 C 1.38230 * 120.00347 * 0.08899 * 25 24 23 27 27 H 1.09000 * 109.46672 * 270.93963 * 1 2 3 28 28 H 1.09002 * 109.46899 * 30.94145 * 1 2 3 29 29 H 1.09000 * 109.47099 * 150.94006 * 1 2 3 30 30 H 1.08004 * 120.01508 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.01324 * 179.97438 * 6 4 3 32 32 H 1.07995 * 119.99150 * 179.97438 * 7 6 4 33 33 H 1.08991 * 109.47320 * 313.80026 * 9 8 2 34 34 H 1.08997 * 109.46888 * 193.79913 * 9 8 2 35 35 H 1.09004 * 109.46992 * 186.21992 * 11 10 9 36 36 H 1.08999 * 109.47526 * 306.22006 * 11 10 9 37 37 H 0.96998 * 120.00258 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.47257 * 69.99157 * 20 10 9 39 39 H 1.09009 * 109.46335 * 309.99880 * 20 10 9 40 40 H 1.08003 * 120.00069 * 359.70361 * 22 21 20 41 41 H 1.08003 * 119.99784 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.99393 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99593 * 180.02562 * 25 24 23 44 44 H 1.07999 * 120.00615 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5823 1.1968 -0.0062 5 9 4.2586 2.3663 -0.0123 6 6 4.2733 -0.0033 -0.0067 7 6 3.5806 -1.1988 -0.0014 8 6 2.1979 -1.1973 0.0053 9 6 1.4434 -2.5018 0.0116 10 7 0.8634 -2.7383 -1.3171 11 6 -0.0885 -3.8567 -1.2844 12 6 -1.2783 -3.4792 -0.4399 13 1 -1.3617 -2.4790 -0.0409 14 6 -2.2603 -4.4106 -0.1768 15 7 -2.2130 -5.5950 -0.7465 16 14 -3.6579 -3.9902 0.9891 17 1 -4.8240 -3.5037 0.2089 18 1 -4.0454 -5.2022 1.7547 19 1 -3.2153 -2.9306 1.9306 20 6 1.9144 -2.9708 -2.3167 21 6 1.3066 -2.9646 -3.6957 22 6 1.2151 -1.7820 -4.4054 23 6 0.6580 -1.7764 -5.6706 24 6 0.1907 -2.9532 -6.2251 25 6 0.2830 -4.1360 -5.5157 26 6 0.8409 -4.1417 -4.2510 27 1 -0.3633 0.0169 1.0275 28 1 -0.3633 0.8814 -0.5284 29 1 -0.3633 -0.8983 -0.4992 30 1 1.6580 2.1325 0.0004 31 1 5.3533 -0.0048 -0.0120 32 1 4.1192 -2.1348 -0.0022 33 1 0.6461 -2.4568 0.7533 34 1 2.1256 -3.3148 0.2602 35 1 -0.4194 -4.0820 -2.2983 36 1 0.3965 -4.7344 -0.8571 37 1 -2.9036 -6.2503 -0.5611 38 1 2.3850 -3.9364 -2.1314 39 1 2.6636 -2.1821 -2.2463 40 1 1.5749 -0.8615 -3.9697 41 1 0.5862 -0.8523 -6.2249 42 1 -0.2449 -2.9487 -7.2134 43 1 -0.0817 -5.0555 -5.9492 44 1 0.9126 -5.0658 -3.6965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140776858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:27 Heat of formation + Delta-G solvation = -8.724224 kcal Electronic energy + Delta-G solvation = -25889.842849 eV Core-core repulsion = 22299.540565 eV Total energy + Delta-G solvation = -3590.302284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.154 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.84065 -40.78565 -39.96894 -37.77109 -34.69451 -33.72847 -32.89507 -31.81600 -31.55032 -29.19138 -28.03538 -26.97497 -25.55683 -23.54296 -23.24969 -22.86542 -21.96987 -21.10920 -18.60251 -18.04717 -17.67478 -17.30601 -16.94878 -16.70260 -16.52323 -16.13531 -15.98291 -15.57807 -15.17803 -15.02106 -14.50506 -14.38546 -14.27728 -14.17811 -13.96307 -13.78186 -13.52602 -13.32376 -13.06627 -12.94409 -12.76466 -12.59352 -12.54251 -12.40454 -12.15045 -11.92952 -11.80366 -11.73403 -11.50812 -11.19986 -10.52079 -9.80765 -9.68410 -9.59842 -9.36121 -8.92796 -8.13983 -6.20153 0.20416 0.34300 0.56147 0.61480 1.42581 1.43741 1.54015 2.43210 2.60623 2.94774 3.20205 3.32019 3.56870 3.82159 3.90527 4.00134 4.03460 4.08163 4.24823 4.27002 4.34566 4.35434 4.47378 4.63071 4.69247 4.76155 4.80561 4.84745 4.90011 4.92101 4.98308 5.15312 5.20087 5.21719 5.23235 5.27373 5.32813 5.43071 5.56302 5.66464 5.69926 5.74072 5.84827 5.86012 6.02794 6.14286 6.22933 6.38111 6.65708 6.96578 7.47994 8.97037 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.008893 B = 0.005562 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.859591 B = 5032.657561 C = 7228.000076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.033 4.033 3 C -0.160 4.160 4 C 0.084 3.916 5 F -0.148 7.148 6 C -0.157 4.157 7 C -0.085 4.085 8 C -0.090 4.090 9 C 0.103 3.897 10 N -0.518 5.518 11 C 0.204 3.796 12 C -0.514 4.514 13 H 0.072 0.928 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.954 3.046 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.260 1.260 20 C 0.094 3.906 21 C -0.080 4.080 22 C -0.109 4.109 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.133 4.133 26 C -0.123 4.123 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.031 0.969 35 H 0.022 0.978 36 H -0.042 1.042 37 H 0.260 0.740 38 H 0.024 0.976 39 H 0.089 0.911 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.129 0.871 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.473 10.374 -3.886 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.034 4.034 3 C -0.179 4.179 4 C 0.065 3.935 5 F -0.126 7.126 6 C -0.176 4.176 7 C -0.104 4.104 8 C -0.091 4.091 9 C -0.024 4.024 10 N -0.242 5.242 11 C 0.078 3.922 12 C -0.553 4.553 13 H 0.090 0.910 14 C -0.192 4.192 15 N -0.573 5.573 16 Si 0.780 3.220 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.184 1.184 20 C -0.033 4.033 21 C -0.081 4.081 22 C -0.127 4.127 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.151 4.151 26 C -0.142 4.142 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.040 0.960 36 H -0.024 1.024 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.107 0.893 40 H 0.144 0.856 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.147 0.853 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.151 10.667 -4.010 15.261 hybrid contribution -0.420 -1.065 0.935 1.478 sum 9.731 9.602 -3.075 14.012 Atomic orbital electron populations 1.21030 0.90486 1.04573 1.02467 1.19665 0.96701 0.91433 0.95598 1.21126 0.92309 0.99425 1.05017 1.17795 0.90243 0.81375 1.04105 1.91461 1.80362 1.46627 1.94181 1.21216 1.01581 0.90471 1.04309 1.21082 0.92838 0.98461 0.97984 1.19883 0.93785 0.94552 1.00872 1.20852 0.96940 0.92520 0.92088 1.62070 1.14706 1.42942 1.04487 1.19503 0.90121 0.86150 0.96404 1.21553 1.05153 0.97918 1.30631 0.90954 1.25764 1.00631 0.95012 0.97818 1.70091 1.35754 1.06860 1.44624 0.85596 0.79435 0.77770 0.79239 1.20494 1.21346 1.18422 1.21042 0.93475 0.99613 0.89189 1.19837 0.99183 0.93736 0.95327 1.21112 0.99690 0.97017 0.94917 1.21419 0.98494 0.99043 0.95442 1.21401 0.99940 0.92293 1.00850 1.21311 0.99696 0.99462 0.94625 1.21115 0.99291 0.97755 0.96045 0.91204 0.90820 0.89743 0.83731 0.82833 0.83860 0.90381 0.95107 0.96029 1.02441 0.93101 0.95799 0.89277 0.85597 0.83634 0.83691 0.85279 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.36 71.24 0.67 -3.26 16 2 C -0.03 -0.97 5.88 -19.87 -0.12 -1.08 16 3 C -0.16 -4.08 9.69 22.31 0.22 -3.87 16 4 C 0.08 2.08 7.30 22.38 0.16 2.25 16 5 F -0.15 -3.67 17.27 44.97 0.78 -2.90 16 6 C -0.16 -3.53 10.03 22.31 0.22 -3.31 16 7 C -0.09 -2.09 8.90 22.26 0.20 -1.90 16 8 C -0.09 -2.68 4.46 -19.86 -0.09 -2.77 16 9 C 0.10 3.71 4.10 85.56 0.35 4.07 16 10 N -0.52 -20.69 3.34 -909.96 -3.04 -23.73 16 11 C 0.20 10.25 4.51 85.56 0.39 10.63 16 12 C -0.51 -27.43 8.19 25.60 0.21 -27.22 16 13 H 0.07 3.71 5.65 -2.91 -0.02 3.69 16 14 C 0.01 0.31 5.45 84.66 0.46 0.77 16 15 N -0.93 -54.85 13.29 21.45 0.29 -54.56 16 16 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 20 C 0.09 3.30 4.98 85.56 0.43 3.73 16 21 C -0.08 -2.83 4.91 -19.87 -0.10 -2.93 16 22 C -0.11 -3.36 9.70 22.27 0.22 -3.14 16 23 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 24 C -0.13 -3.43 10.05 22.27 0.22 -3.20 16 25 C -0.13 -4.19 10.05 22.27 0.22 -3.97 16 26 C -0.12 -4.51 7.86 22.27 0.17 -4.34 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.07 1.94 8.09 -2.39 -0.02 1.93 16 29 H 0.08 3.16 4.20 -2.39 -0.01 3.14 16 30 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.14 3.02 7.99 -2.91 -0.02 2.99 16 33 H 0.08 3.13 6.23 -2.39 -0.01 3.12 16 34 H 0.03 1.08 7.91 -2.39 -0.02 1.07 16 35 H 0.02 1.18 5.47 -2.39 -0.01 1.17 16 36 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 37 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.02 0.86 8.06 -2.39 -0.02 0.84 16 39 H 0.09 2.76 6.40 -2.38 -0.02 2.74 16 40 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 41 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 43 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 44 H 0.10 3.91 7.87 -2.91 -0.02 3.89 16 Total: -1.00 -61.49 361.00 5.11 -56.38 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 1.00 Total: 22.31 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 4.06 Total: -42.69 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.75 Total: -78.29 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.78 Total: -2.90 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -61.49 5.11 -56.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140776858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.657 kcal (2) G-P(sol) polarization free energy of solvation -61.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds