Wall clock time and date at job start Fri Apr 10 2020 22:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38265 * 119.98861 * 2 1 4 4 C 1.38231 * 120.05211 * 179.74660 * 3 2 1 5 5 C 1.38222 * 120.02186 * 0.54758 * 4 3 2 6 6 C 1.50703 * 120.00886 * 179.72092 * 5 4 3 7 7 N 1.46895 * 109.46912 * 254.08418 * 6 5 4 8 8 C 1.46911 * 110.99753 * 197.02226 * 7 6 5 9 9 C 1.50701 * 109.47033 * 67.42767 * 8 7 6 10 10 H 1.08001 * 119.99773 * 3.15637 * 9 8 7 11 11 C 1.37872 * 119.99966 * 183.16325 * 9 8 7 12 12 N 1.31522 * 120.00035 * 354.65566 * 11 9 8 13 13 Si 1.86797 * 120.00288 * 174.65410 * 11 9 8 14 14 H 1.48504 * 109.46972 * 64.99834 * 13 11 9 15 15 H 1.48501 * 109.47466 * 184.99617 * 13 11 9 16 16 H 1.48495 * 109.47144 * 305.00181 * 13 11 9 17 17 C 1.46892 * 111.00371 * 73.07143 * 7 6 5 18 18 C 1.50705 * 109.47394 * 189.99810 * 17 7 6 19 19 C 1.38232 * 120.00108 * 89.99718 * 18 17 7 20 20 C 1.38234 * 119.99693 * 179.97438 * 19 18 17 21 21 C 1.38231 * 120.00350 * 0.08775 * 20 19 18 22 22 C 1.38229 * 119.99698 * 359.86824 * 21 20 19 23 23 C 1.38230 * 119.99673 * 269.97574 * 18 17 7 24 24 C 1.38439 * 119.97681 * 359.45773 * 5 4 3 25 25 F 1.35096 * 120.02583 * 180.29764 * 24 5 4 26 26 C 1.38175 * 119.98758 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47370 * 269.97753 * 1 2 3 28 28 H 1.09002 * 109.46855 * 29.98004 * 1 2 3 29 29 H 1.09004 * 109.47204 * 149.97720 * 1 2 3 30 30 H 1.08000 * 119.97508 * 0.02587 * 3 2 1 31 31 H 1.07996 * 119.98940 * 180.27803 * 4 3 2 32 32 H 1.09002 * 109.46705 * 134.08460 * 6 5 4 33 33 H 1.08996 * 109.47156 * 14.08680 * 6 5 4 34 34 H 1.08996 * 109.46910 * 187.42669 * 8 7 6 35 35 H 1.09003 * 109.47019 * 307.42901 * 8 7 6 36 36 H 0.96995 * 120.00141 * 179.97438 * 12 11 9 37 37 H 1.09005 * 109.47315 * 69.99290 * 17 7 6 38 38 H 1.08999 * 109.46758 * 309.99651 * 17 7 6 39 39 H 1.08003 * 119.99569 * 359.70060 * 19 18 17 40 40 H 1.08000 * 119.99572 * 179.97438 * 20 19 18 41 41 H 1.08000 * 119.99803 * 179.97438 * 21 20 19 42 42 H 1.08011 * 119.99958 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.00288 * 359.97438 * 23 18 17 44 44 H 1.08005 * 120.01268 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1976 0.0000 4 6 3.5804 1.1991 0.0053 5 6 4.2733 0.0031 -0.0008 6 6 5.7803 0.0052 -0.0014 7 7 6.2699 -0.3674 -1.3353 8 6 7.6824 -0.7681 -1.2847 9 6 7.8116 -2.0571 -0.5147 10 1 6.9278 -2.5579 -0.1479 11 6 9.0580 -2.5970 -0.2784 12 7 10.1256 -2.0456 -0.8132 13 14 9.2305 -4.1116 0.8012 14 1 8.5620 -5.2648 0.1466 15 1 10.6702 -4.4193 0.9960 16 1 8.5964 -3.8548 2.1192 17 6 6.0671 0.7260 -2.2950 18 6 6.3490 0.2293 -3.6896 19 6 5.3303 -0.3161 -4.4483 20 6 5.5889 -0.7712 -5.7277 21 6 6.8666 -0.6827 -6.2477 22 6 7.8851 -0.1365 -5.4894 23 6 7.6263 0.3194 -4.2103 24 6 3.5824 -1.1966 -0.0010 25 9 4.2587 -2.3661 -0.0009 26 6 2.1976 -1.1968 -0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6575 2.1325 0.0004 31 1 4.1191 2.1351 0.0098 32 1 6.1448 -0.7129 0.7331 33 1 6.1424 1.0012 0.2534 34 1 8.0559 -0.9115 -2.2986 35 1 8.2634 0.0104 -0.7901 36 1 11.0026 -2.4252 -0.6467 37 1 6.7433 1.5475 -2.0582 38 1 5.0363 1.0753 -2.2352 39 1 4.3333 -0.3906 -4.0397 40 1 4.7930 -1.1977 -6.3202 41 1 7.0686 -1.0387 -7.2472 42 1 8.8833 -0.0669 -5.8959 43 1 8.4221 0.7462 -3.6178 44 1 1.6576 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141190984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:32 Heat of formation + Delta-G solvation = 2.183121 kcal Electronic energy + Delta-G solvation = -25872.006635 eV Core-core repulsion = 22282.177329 eV Total energy + Delta-G solvation = -3589.829306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.154 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.26973 -39.29287 -38.76731 -36.47107 -33.11208 -32.50009 -30.94666 -30.43286 -30.32237 -28.27402 -27.05161 -24.98493 -23.52622 -22.60623 -22.14307 -21.38404 -20.73877 -19.75231 -16.64909 -16.54314 -16.32503 -15.95689 -15.66404 -15.28377 -14.85431 -14.70237 -14.41483 -14.12238 -13.87402 -13.59514 -13.51594 -13.35706 -13.06224 -12.94815 -12.47363 -12.16764 -12.11248 -11.99821 -11.82372 -11.60619 -11.50093 -11.22593 -10.83849 -10.81230 -10.64220 -10.51848 -10.49707 -10.30057 -9.81717 -9.21664 -8.69310 -8.45634 -8.36039 -8.23997 -8.16184 -7.26525 -5.97939 -3.96709 1.36599 1.42712 1.83778 1.89525 3.37753 3.41016 3.45380 3.73841 4.22827 4.49332 4.56803 4.85265 4.87756 5.05740 5.21750 5.27102 5.28611 5.35466 5.37816 5.39946 5.46747 5.48876 5.57409 5.62053 5.73075 5.78506 5.93896 5.96889 6.05535 6.10442 6.13863 6.31481 6.40683 6.47350 6.50460 6.53045 6.58815 6.65080 6.90705 6.95778 7.14609 7.16364 7.31443 7.33128 7.48659 7.87852 8.10881 8.19308 8.57569 9.11477 9.66513 11.13004 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.008742 B = 0.005818 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.246409 B = 4811.548919 C = 7050.906690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.070 4.070 3 C -0.139 4.139 4 C -0.089 4.089 5 C -0.105 4.105 6 C 0.098 3.902 7 N -0.522 5.522 8 C 0.188 3.812 9 C -0.505 4.505 10 H 0.066 0.934 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.090 3.910 18 C -0.060 4.060 19 C -0.101 4.101 20 C -0.129 4.129 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.098 4.098 24 C 0.133 3.867 25 F -0.122 7.122 26 C -0.165 4.165 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.034 0.966 34 H 0.044 0.956 35 H -0.011 1.011 36 H 0.260 0.740 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 7.650 -3.083 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.070 4.070 3 C -0.157 4.157 4 C -0.108 4.108 5 C -0.107 4.107 6 C -0.030 4.030 7 N -0.246 5.246 8 C 0.064 3.936 9 C -0.543 4.543 10 H 0.084 0.916 11 C -0.144 4.144 12 N -0.538 5.538 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.038 4.038 18 C -0.061 4.061 19 C -0.119 4.119 20 C -0.147 4.147 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.117 4.117 24 C 0.113 3.887 25 F -0.100 7.100 26 C -0.184 4.184 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.007 0.993 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.065 7.173 -3.240 16.997 hybrid contribution 0.918 -0.505 0.828 1.335 sum -14.146 6.668 -2.413 15.824 Atomic orbital electron populations 1.20760 0.91040 1.02730 1.02239 1.19612 0.95887 0.92366 0.99170 1.20935 0.94013 0.97371 1.03385 1.20942 0.93891 0.97093 0.98858 1.20199 0.97449 0.91734 1.01310 1.20915 0.88111 1.00164 0.93766 1.62146 1.24145 1.33776 1.04533 1.19886 0.80334 0.95142 0.98276 1.21165 0.92431 1.06989 1.33763 0.91577 1.24937 0.95867 0.97341 0.96227 1.69955 0.98380 1.41331 1.44158 0.86632 0.76669 0.83456 0.81139 1.20280 1.21451 1.20227 1.21042 1.00090 0.92852 0.89826 1.19747 0.93333 0.97956 0.95055 1.20909 0.98946 0.98205 0.93890 1.21006 0.96729 1.00952 0.95983 1.21005 0.93383 1.00660 0.99657 1.21052 0.98761 0.99455 0.94759 1.21112 0.96220 0.99306 0.95062 1.17527 0.89339 0.81780 1.00068 1.91578 1.80165 1.45161 1.93097 1.20986 0.92386 0.98996 1.06004 0.91209 0.91505 0.91565 0.86028 0.85645 0.88212 0.94774 0.93774 0.99305 0.93027 0.95089 0.91283 0.86679 0.86808 0.86858 0.86563 0.86157 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.00 0.36 -0.57 16 2 C -0.07 -0.83 5.88 -104.64 -0.62 -1.44 16 3 C -0.14 -1.62 9.70 -39.57 -0.38 -2.00 16 4 C -0.09 -1.20 8.99 -39.59 -0.36 -1.55 16 5 C -0.11 -1.75 4.71 -104.55 -0.49 -2.24 16 6 C 0.10 1.90 4.64 -4.98 -0.02 1.87 16 7 N -0.52 -11.17 4.41 -238.96 -1.05 -12.22 16 8 C 0.19 4.84 4.53 -4.97 -0.02 4.82 16 9 C -0.50 -14.28 8.21 -34.44 -0.28 -14.56 16 10 H 0.07 1.90 7.49 -52.49 -0.39 1.50 16 11 C 0.06 1.64 5.45 -17.82 -0.10 1.54 16 12 N -0.90 -26.71 13.30 55.43 0.74 -25.97 16 13 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.09 1.64 4.96 -4.98 -0.02 1.61 16 18 C -0.06 -1.11 4.91 -104.62 -0.51 -1.63 16 19 C -0.10 -1.71 9.70 -39.58 -0.38 -2.09 16 20 C -0.13 -1.97 10.05 -39.59 -0.40 -2.37 16 21 C -0.13 -1.96 10.05 -39.59 -0.40 -2.36 16 22 C -0.12 -2.02 10.05 -39.59 -0.40 -2.42 16 23 C -0.10 -1.81 7.85 -39.58 -0.31 -2.12 16 24 C 0.13 2.28 7.25 -39.42 -0.29 2.00 16 25 F -0.12 -2.48 16.77 2.25 0.04 -2.44 16 26 C -0.16 -2.30 9.68 -39.51 -0.38 -2.68 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 31 H 0.13 1.46 7.99 -52.49 -0.42 1.04 16 32 H 0.10 2.19 6.71 -51.93 -0.35 1.84 16 33 H 0.03 0.61 7.84 -51.93 -0.41 0.20 16 34 H 0.04 1.21 5.39 -51.93 -0.28 0.93 16 35 H -0.01 -0.30 8.11 -51.93 -0.42 -0.72 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 38 H 0.07 1.14 6.71 -51.93 -0.35 0.79 16 39 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 40 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 43 H 0.12 2.26 7.84 -52.49 -0.41 1.85 16 44 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -31.12 369.07 -11.13 -42.25 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.38 Total: 1.88 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -5.01 Total: -26.20 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.32 Total: -38.19 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.12 -11.13 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141190984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.431 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds