Wall clock time and date at job start Fri Apr 10 2020 22:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38265 * 119.98861 * 2 1 4 4 C 1.38231 * 120.05211 * 179.74660 * 3 2 1 5 5 C 1.38222 * 120.02186 * 0.54758 * 4 3 2 6 6 C 1.50703 * 120.00886 * 179.72092 * 5 4 3 7 7 N 1.46895 * 109.46912 * 254.08418 * 6 5 4 8 8 C 1.46911 * 110.99753 * 197.02226 * 7 6 5 9 9 C 1.50701 * 109.47033 * 67.42767 * 8 7 6 10 10 H 1.08001 * 119.99773 * 3.15637 * 9 8 7 11 11 C 1.37872 * 119.99966 * 183.16325 * 9 8 7 12 12 N 1.31522 * 120.00035 * 354.65566 * 11 9 8 13 13 Si 1.86797 * 120.00288 * 174.65410 * 11 9 8 14 14 H 1.48504 * 109.46972 * 64.99834 * 13 11 9 15 15 H 1.48501 * 109.47466 * 184.99617 * 13 11 9 16 16 H 1.48495 * 109.47144 * 305.00181 * 13 11 9 17 17 C 1.46892 * 111.00371 * 73.07143 * 7 6 5 18 18 C 1.50705 * 109.47394 * 189.99810 * 17 7 6 19 19 C 1.38232 * 120.00108 * 89.99718 * 18 17 7 20 20 C 1.38234 * 119.99693 * 179.97438 * 19 18 17 21 21 C 1.38231 * 120.00350 * 0.08775 * 20 19 18 22 22 C 1.38229 * 119.99698 * 359.86824 * 21 20 19 23 23 C 1.38230 * 119.99673 * 269.97574 * 18 17 7 24 24 C 1.38439 * 119.97681 * 359.45773 * 5 4 3 25 25 F 1.35096 * 120.02583 * 180.29764 * 24 5 4 26 26 C 1.38175 * 119.98758 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47370 * 269.97753 * 1 2 3 28 28 H 1.09002 * 109.46855 * 29.98004 * 1 2 3 29 29 H 1.09004 * 109.47204 * 149.97720 * 1 2 3 30 30 H 1.08000 * 119.97508 * 0.02587 * 3 2 1 31 31 H 1.07996 * 119.98940 * 180.27803 * 4 3 2 32 32 H 1.09002 * 109.46705 * 134.08460 * 6 5 4 33 33 H 1.08996 * 109.47156 * 14.08680 * 6 5 4 34 34 H 1.08996 * 109.46910 * 187.42669 * 8 7 6 35 35 H 1.09003 * 109.47019 * 307.42901 * 8 7 6 36 36 H 0.96995 * 120.00141 * 179.97438 * 12 11 9 37 37 H 1.09005 * 109.47315 * 69.99290 * 17 7 6 38 38 H 1.08999 * 109.46758 * 309.99651 * 17 7 6 39 39 H 1.08003 * 119.99569 * 359.70060 * 19 18 17 40 40 H 1.08000 * 119.99572 * 179.97438 * 20 19 18 41 41 H 1.08000 * 119.99803 * 179.97438 * 21 20 19 42 42 H 1.08011 * 119.99958 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.00288 * 359.97438 * 23 18 17 44 44 H 1.08005 * 120.01268 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1976 0.0000 4 6 3.5804 1.1991 0.0053 5 6 4.2733 0.0031 -0.0008 6 6 5.7803 0.0052 -0.0014 7 7 6.2699 -0.3674 -1.3353 8 6 7.6824 -0.7681 -1.2847 9 6 7.8116 -2.0571 -0.5147 10 1 6.9278 -2.5579 -0.1479 11 6 9.0580 -2.5970 -0.2784 12 7 10.1256 -2.0456 -0.8132 13 14 9.2305 -4.1116 0.8012 14 1 8.5620 -5.2648 0.1466 15 1 10.6702 -4.4193 0.9960 16 1 8.5964 -3.8548 2.1192 17 6 6.0671 0.7260 -2.2950 18 6 6.3490 0.2293 -3.6896 19 6 5.3303 -0.3161 -4.4483 20 6 5.5889 -0.7712 -5.7277 21 6 6.8666 -0.6827 -6.2477 22 6 7.8851 -0.1365 -5.4894 23 6 7.6263 0.3194 -4.2103 24 6 3.5824 -1.1966 -0.0010 25 9 4.2587 -2.3661 -0.0009 26 6 2.1976 -1.1968 -0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6575 2.1325 0.0004 31 1 4.1191 2.1351 0.0098 32 1 6.1448 -0.7129 0.7331 33 1 6.1424 1.0012 0.2534 34 1 8.0559 -0.9115 -2.2986 35 1 8.2634 0.0104 -0.7901 36 1 11.0026 -2.4252 -0.6467 37 1 6.7433 1.5475 -2.0582 38 1 5.0363 1.0753 -2.2352 39 1 4.3333 -0.3906 -4.0397 40 1 4.7930 -1.1977 -6.3202 41 1 7.0686 -1.0387 -7.2472 42 1 8.8833 -0.0669 -5.8959 43 1 8.4221 0.7462 -3.6178 44 1 1.6576 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141190984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:31 Heat of formation + Delta-G solvation = -13.569927 kcal Electronic energy + Delta-G solvation = -25872.689739 eV Core-core repulsion = 22282.177329 eV Total energy + Delta-G solvation = -3590.512410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.154 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.66991 -40.56556 -39.96443 -38.00828 -34.85339 -34.01365 -32.34699 -31.72721 -31.40196 -29.73563 -28.67374 -26.36622 -25.22729 -23.70356 -23.45773 -22.94186 -21.92807 -21.27929 -18.58286 -17.83036 -17.69273 -17.28657 -16.98246 -16.78105 -16.42967 -16.13280 -16.00210 -15.57715 -15.15282 -14.96814 -14.85085 -14.34165 -14.26024 -14.19497 -13.97743 -13.69430 -13.48426 -13.30305 -13.23109 -13.09082 -12.71146 -12.62971 -12.54269 -12.43753 -12.17011 -12.00938 -11.90789 -11.81179 -11.55952 -11.29617 -10.58402 -9.78679 -9.71483 -9.59999 -9.34674 -9.00248 -8.19945 -6.26270 0.26505 0.33586 0.53260 0.58250 1.35640 1.38227 1.46494 2.38519 2.63966 2.91055 3.12353 3.47234 3.52188 3.81665 3.84165 3.95735 4.01388 4.10270 4.21861 4.24981 4.31463 4.40798 4.45773 4.54778 4.61385 4.72091 4.74353 4.78677 4.83583 4.91570 4.94730 5.14059 5.17295 5.21010 5.22701 5.30079 5.32459 5.36118 5.52535 5.61466 5.62951 5.66356 5.67824 5.81750 6.06815 6.08888 6.19704 6.32588 6.62283 6.88680 7.41208 8.90635 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.008742 B = 0.005818 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.246409 B = 4811.548919 C = 7050.906690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.060 4.060 3 C -0.126 4.126 4 C -0.087 4.087 5 C -0.125 4.125 6 C 0.104 3.896 7 N -0.528 5.528 8 C 0.207 3.793 9 C -0.518 4.518 10 H 0.055 0.945 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.956 3.044 14 H -0.274 1.274 15 H -0.278 1.278 16 H -0.270 1.270 17 C 0.096 3.904 18 C -0.083 4.083 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.124 4.124 24 C 0.095 3.905 25 F -0.153 7.153 26 C -0.167 4.167 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.160 0.840 31 H 0.143 0.857 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.025 0.975 35 H -0.041 1.041 36 H 0.263 0.737 37 H 0.027 0.973 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.131 0.869 43 H 0.100 0.900 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.207 8.091 -3.879 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.061 4.061 3 C -0.144 4.144 4 C -0.105 4.105 5 C -0.127 4.127 6 C -0.024 4.024 7 N -0.252 5.252 8 C 0.082 3.918 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.190 4.190 12 N -0.570 5.570 13 Si 0.781 3.219 14 H -0.199 1.199 15 H -0.203 1.203 16 H -0.195 1.195 17 C -0.032 4.032 18 C -0.083 4.083 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.142 4.142 24 C 0.076 3.924 25 F -0.132 7.132 26 C -0.186 4.186 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.178 0.822 31 H 0.161 0.839 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.043 0.957 35 H -0.023 1.023 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.149 0.851 43 H 0.118 0.882 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.247 7.628 -4.032 20.184 hybrid contribution 1.787 -0.566 1.035 2.141 sum -16.460 7.062 -2.998 18.160 Atomic orbital electron populations 1.20858 0.88013 1.04164 1.03588 1.20095 0.97934 0.91423 0.96605 1.21371 0.93143 0.98955 1.00956 1.21158 0.95025 0.96350 0.98003 1.19981 0.95372 0.93125 1.04193 1.20752 0.90655 0.99175 0.91783 1.62047 1.20960 1.35875 1.06302 1.19463 0.82748 0.93465 0.96164 1.21409 0.92271 1.07925 1.34084 0.92697 1.25742 0.95507 1.00377 0.97388 1.70069 0.98798 1.42833 1.45256 0.85639 0.77058 0.79726 0.79457 1.19949 1.20348 1.19544 1.21051 1.01102 0.91691 0.89329 1.19850 0.93919 0.99363 0.95214 1.21113 0.98923 0.98196 0.94693 1.21425 0.97784 0.99697 0.95456 1.21420 0.92820 0.99288 1.00854 1.21332 1.00229 0.99281 0.94187 1.21123 0.96025 1.00884 0.96206 1.17977 0.90773 0.80951 1.02732 1.91489 1.81062 1.46862 1.93758 1.21204 0.90946 1.00779 1.05635 0.89723 0.89439 0.90876 0.82194 0.83889 0.91969 0.93958 0.95742 1.02334 0.92818 0.95507 0.89109 0.85753 0.83458 0.83436 0.85065 0.88228 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.23 0.71 -0.63 16 2 C -0.06 -1.22 5.88 -19.87 -0.12 -1.34 16 3 C -0.13 -2.46 9.70 22.27 0.22 -2.25 16 4 C -0.09 -2.17 8.99 22.26 0.20 -1.97 16 5 C -0.13 -4.22 4.71 -19.82 -0.09 -4.32 16 6 C 0.10 4.26 4.64 85.56 0.40 4.66 16 7 N -0.53 -23.90 4.41 -909.93 -4.02 -27.92 16 8 C 0.21 11.42 4.53 85.56 0.39 11.81 16 9 C -0.52 -30.94 8.21 25.60 0.21 -30.73 16 10 H 0.05 3.34 7.49 -2.91 -0.02 3.32 16 11 C 0.01 0.47 5.45 84.65 0.46 0.94 16 12 N -0.93 -57.29 13.30 21.45 0.29 -57.00 16 13 Si 0.96 46.77 29.54 68.60 2.03 48.80 16 14 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 15 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 16 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 17 C 0.10 3.62 4.96 85.56 0.42 4.05 16 18 C -0.08 -3.14 4.91 -19.87 -0.10 -3.24 16 19 C -0.11 -3.67 9.70 22.27 0.22 -3.45 16 20 C -0.13 -3.58 10.05 22.27 0.22 -3.36 16 21 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 22 C -0.13 -4.38 10.05 22.27 0.22 -4.15 16 23 C -0.12 -4.78 7.85 22.27 0.17 -4.60 16 24 C 0.10 3.34 7.25 22.38 0.16 3.51 16 25 F -0.15 -6.62 16.77 44.97 0.75 -5.86 16 26 C -0.17 -4.45 9.68 22.31 0.22 -4.23 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.77 8.09 -2.39 -0.02 0.75 16 29 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 30 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 31 H 0.14 3.01 7.99 -2.91 -0.02 2.99 16 32 H 0.06 2.97 6.71 -2.39 -0.02 2.95 16 33 H 0.04 1.60 7.84 -2.39 -0.02 1.59 16 34 H 0.02 1.44 5.39 -2.39 -0.01 1.43 16 35 H -0.04 -2.44 8.11 -2.39 -0.02 -2.46 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.03 1.02 8.07 -2.38 -0.02 1.00 16 38 H 0.09 2.98 6.71 -2.39 -0.02 2.97 16 39 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 40 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 41 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 42 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 43 H 0.10 4.12 7.84 -2.91 -0.02 4.10 16 44 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -71.97 369.07 4.17 -67.80 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.98 Total: 16.84 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 4.14 Total: -42.66 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -3.73 Total: -84.92 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.75 Total: -5.86 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -71.97 4.17 -67.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141190984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.226 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds