Wall clock time and date at job start Fri Apr 10 2020 22:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38198 * 120.01803 * 2 1 4 4 C 1.38240 * 120.02784 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.97649 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46753 * 89.06860 * 5 4 3 7 7 C 1.36931 * 120.00325 * 271.88011 * 6 5 4 8 8 H 1.07996 * 120.00332 * 342.92357 * 7 6 5 9 9 C 1.38818 * 120.00092 * 162.92192 * 7 6 5 10 10 N 1.31620 * 120.00166 * 42.53266 * 9 7 6 11 11 Si 1.86801 * 119.99948 * 222.53395 * 9 7 6 12 12 H 1.48501 * 109.47119 * 90.00032 * 11 9 7 13 13 H 1.48501 * 109.46786 * 209.99979 * 11 9 7 14 14 H 1.48501 * 109.47288 * 329.99806 * 11 9 7 15 15 C 1.46507 * 119.99671 * 91.88111 * 6 5 4 16 16 C 1.50698 * 109.47196 * 83.44527 * 15 6 5 17 17 C 1.38233 * 119.99840 * 66.13079 * 16 15 6 18 18 C 1.38237 * 119.99942 * 179.97438 * 17 16 15 19 19 C 1.38235 * 120.00001 * 0.08836 * 18 17 16 20 20 C 1.38233 * 120.00003 * 359.86938 * 19 18 17 21 21 C 1.38233 * 120.00058 * 246.11340 * 16 15 6 22 22 C 1.38244 * 120.04919 * 0.29756 * 4 3 2 23 23 C 1.38201 * 120.03126 * 359.45134 * 22 4 3 24 24 C 1.50691 * 120.01735 * 180.29545 * 23 22 4 25 25 C 1.38461 * 120.01036 * 180.02562 * 2 1 3 26 26 F 1.35103 * 120.02570 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47162 * 90.00019 * 1 2 3 28 28 H 1.09000 * 109.47618 * 209.99815 * 1 2 3 29 29 H 1.09001 * 109.47097 * 330.00585 * 1 2 3 30 30 H 1.07997 * 119.98183 * 0.02562 * 3 2 1 31 31 H 1.09006 * 109.46920 * 329.07706 * 5 4 3 32 32 H 1.08998 * 109.47157 * 209.06914 * 5 4 3 33 33 H 0.96996 * 120.00148 * 180.02562 * 10 9 7 34 34 H 1.08999 * 109.46914 * 323.44753 * 15 6 5 35 35 H 1.08999 * 109.46931 * 203.44335 * 15 6 5 36 36 H 1.08007 * 120.00253 * 359.69845 * 17 16 15 37 37 H 1.08003 * 120.00194 * 179.97438 * 18 17 16 38 38 H 1.08001 * 119.99844 * 179.97438 * 19 18 17 39 39 H 1.08000 * 119.99853 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.00132 * 359.97438 * 21 16 15 41 41 H 1.08002 * 119.98448 * 179.70426 * 22 4 3 42 42 H 1.08998 * 109.47460 * 270.23139 * 24 23 22 43 43 H 1.09005 * 109.47081 * 30.23046 * 24 23 22 44 44 H 1.09006 * 109.47152 * 150.22639 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1966 0.0000 4 6 3.5807 1.1968 0.0005 5 6 4.3335 2.5024 0.0011 6 7 4.5573 2.9363 1.3824 7 6 3.6169 3.6993 2.0214 8 1 2.8564 4.2101 1.4494 9 6 3.6409 3.8163 3.4044 10 7 4.7857 3.9881 4.0306 11 14 2.0482 3.7297 4.3768 12 1 1.7718 2.3190 4.7493 13 1 2.1745 4.5511 5.6075 14 1 0.9324 4.2503 3.5466 15 6 5.7876 2.5538 2.0800 16 6 6.8904 3.5144 1.7169 17 6 6.8107 4.8379 2.1078 18 6 7.8226 5.7190 1.7752 19 6 8.9133 5.2770 1.0500 20 6 8.9935 3.9533 0.6598 21 6 7.9819 3.0720 0.9931 22 6 4.2732 0.0003 -0.0051 23 6 3.5841 -1.1976 0.0001 24 6 4.3392 -2.5016 0.0006 25 6 2.1995 -1.1990 -0.0005 26 9 1.5247 -2.3694 -0.0016 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6583 2.1319 0.0004 31 1 3.7513 3.2576 -0.5271 32 1 5.2933 2.3686 -0.4978 33 1 4.8025 4.0695 4.9970 34 1 6.0735 1.5441 1.7851 35 1 5.6192 2.5840 3.1565 36 1 5.9557 5.1846 2.6693 37 1 7.7602 6.7532 2.0802 38 1 9.7037 5.9655 0.7898 39 1 9.8458 3.6079 0.0937 40 1 8.0445 2.0378 0.6883 41 1 5.3532 0.0018 -0.0095 42 1 4.5214 -2.8165 -1.0269 43 1 5.2915 -2.3699 0.5145 44 1 3.7511 -3.2619 0.5148 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143381497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:42 Heat of formation + Delta-G solvation = 23.257735 kcal Electronic energy + Delta-G solvation = -25871.003655 eV Core-core repulsion = 22282.088213 eV Total energy + Delta-G solvation = -3588.915442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.154 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.56908 -39.06555 -38.30757 -35.73339 -33.42412 -32.52896 -31.25935 -29.96600 -29.87571 -27.33528 -26.48579 -25.60553 -25.51735 -22.17724 -21.56578 -20.90743 -20.43407 -19.57364 -17.15925 -17.03435 -16.24593 -15.76943 -15.46673 -15.07405 -14.49523 -14.17778 -13.99289 -13.64388 -13.55498 -13.47469 -13.15594 -13.12671 -12.94312 -12.74653 -12.71027 -12.52122 -12.29973 -11.96120 -11.74311 -11.51855 -11.45588 -10.99989 -10.89634 -10.78781 -10.56251 -10.41362 -10.35748 -10.16826 -10.06164 -9.62030 -8.36369 -8.29680 -8.04481 -8.01721 -7.72236 -7.12114 -6.13724 -3.16624 1.60010 1.63452 2.23135 2.34429 3.34697 3.45677 3.50413 3.94967 4.43302 4.62649 4.71562 4.95990 4.98337 4.98700 5.27270 5.51105 5.57719 5.62311 5.64278 5.66739 5.69926 5.72013 5.75889 5.81458 5.92884 5.93866 6.02632 6.12446 6.14353 6.36208 6.46533 6.47067 6.53012 6.58600 6.60766 6.66922 6.76641 6.94363 7.07617 7.13713 7.26292 7.37073 7.49391 7.64079 7.73613 7.84713 8.00903 8.29297 9.01036 9.67904 10.17316 10.90503 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.004983 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.393827 B = 5617.532429 C = 7261.156359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.120 4.120 3 C -0.078 4.078 4 C -0.077 4.077 5 C 0.187 3.813 6 N -0.580 5.580 7 C -0.267 4.267 8 H 0.081 0.919 9 C 0.028 3.972 10 N -0.860 5.860 11 Si 0.855 3.145 12 H -0.287 1.287 13 H -0.295 1.295 14 H -0.279 1.279 15 C 0.160 3.840 16 C -0.068 4.068 17 C -0.069 4.069 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.094 4.094 23 C -0.122 4.122 24 C -0.108 4.108 25 C 0.072 3.928 26 F -0.148 7.148 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.260 0.740 34 H 0.019 0.981 35 H 0.134 0.866 36 H 0.161 0.839 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.123 0.877 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -5.792 -7.581 9.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.121 4.121 3 C -0.097 4.097 4 C -0.081 4.081 5 C 0.060 3.940 6 N -0.298 5.298 7 C -0.394 4.394 8 H 0.099 0.901 9 C -0.171 4.171 10 N -0.502 5.502 11 Si 0.683 3.317 12 H -0.214 1.214 13 H -0.222 1.222 14 H -0.204 1.204 15 C 0.035 3.965 16 C -0.071 4.071 17 C -0.087 4.087 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.112 4.112 23 C -0.122 4.122 24 C -0.165 4.165 25 C 0.053 3.947 26 F -0.127 7.127 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.151 0.849 36 H 0.178 0.822 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.141 0.859 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.908 -5.765 -7.397 9.422 hybrid contribution -0.815 -0.244 0.622 1.054 sum 0.093 -6.009 -6.775 9.057 Atomic orbital electron populations 1.20669 0.90920 1.02982 1.02095 1.19858 0.96457 0.92127 1.03640 1.20786 0.93883 0.96491 0.98547 1.21105 0.94111 0.97405 0.95454 1.19740 0.96619 0.90272 0.87342 1.44045 1.17485 1.58045 1.10250 1.19087 1.05976 1.25259 0.89033 0.90146 1.24825 0.96069 0.99891 0.96334 1.69992 1.24863 1.46157 1.09234 0.86971 0.86718 0.78142 0.79866 1.21401 1.22212 1.20427 1.20951 0.82457 0.90517 1.02533 1.21006 0.94934 0.96788 0.94375 1.21827 0.98438 0.92731 0.95712 1.21222 0.95389 0.99339 1.00232 1.20888 0.98530 0.95677 1.01155 1.20848 0.98882 0.94073 1.02234 1.21088 0.95294 0.98625 1.00596 1.20748 0.99546 0.90638 1.00306 1.19795 0.91735 0.96705 1.04009 1.20652 0.99882 0.93892 1.02091 1.17253 0.89419 0.80601 1.07443 1.91391 1.80452 1.46439 1.94393 0.91395 0.91769 0.91050 0.85395 0.92663 0.93081 0.92904 0.96305 0.84947 0.82220 0.87657 0.87934 0.87873 0.87808 0.85923 0.91428 0.91241 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.83 36.00 0.35 -1.13 16 2 C -0.12 -1.95 5.89 -104.56 -0.62 -2.57 16 3 C -0.08 -1.34 9.36 -39.60 -0.37 -1.72 16 4 C -0.08 -1.36 5.46 -104.62 -0.57 -1.93 16 5 C 0.19 3.51 5.81 -5.19 -0.03 3.48 16 6 N -0.58 -12.75 2.45 -175.98 -0.43 -13.18 16 7 C -0.27 -6.47 9.30 -15.06 -0.14 -6.61 16 8 H 0.08 1.96 8.05 -52.49 -0.42 1.54 16 9 C 0.03 0.69 4.95 -17.43 -0.09 0.61 16 10 N -0.86 -21.54 8.07 55.49 0.45 -21.09 16 11 Si 0.86 19.92 29.69 -169.99 -5.05 14.87 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.16 3.51 5.34 -5.19 -0.03 3.48 16 16 C -0.07 -1.43 5.47 -104.63 -0.57 -2.00 16 17 C -0.07 -1.49 9.25 -39.58 -0.37 -1.85 16 18 C -0.14 -2.72 10.05 -39.58 -0.40 -3.11 16 19 C -0.14 -2.47 10.05 -39.58 -0.40 -2.87 16 20 C -0.14 -2.41 10.05 -39.58 -0.40 -2.81 16 21 C -0.14 -2.52 9.67 -39.58 -0.38 -2.90 16 22 C -0.09 -1.53 9.35 -39.59 -0.37 -1.90 16 23 C -0.12 -1.91 5.89 -104.56 -0.62 -2.53 16 24 C -0.11 -1.37 9.83 36.00 0.35 -1.01 16 25 C 0.07 1.19 7.18 -39.42 -0.28 0.91 16 26 F -0.15 -2.37 15.69 2.25 0.04 -2.33 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.84 7.64 -51.93 -0.40 0.44 16 29 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 30 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.06 1.02 8.00 -51.93 -0.42 0.60 16 32 H 0.05 0.91 7.99 -51.93 -0.42 0.49 16 33 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 34 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 35 H 0.13 3.29 4.84 -51.93 -0.25 3.04 16 36 H 0.16 3.88 5.57 -52.48 -0.29 3.59 16 37 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 38 H 0.10 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.10 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.10 1.70 7.96 -52.49 -0.42 1.29 16 41 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 44 H 0.06 0.80 7.64 -51.93 -0.40 0.40 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -25.57 366.56 -10.74 -36.31 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.35 Total: 6.37 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -4.92 Total: -26.46 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.02 Total: -34.28 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.05 Total: 14.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -25.57 -10.74 -36.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143381497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.563 kcal (2) G-P(sol) polarization free energy of solvation -25.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds