Wall clock time and date at job start Fri Apr 10 2020 22:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36440 * 120.06197 * 2 1 4 4 C 1.38905 * 120.74611 * 179.97438 * 3 2 1 5 5 C 1.37772 * 120.52243 * 0.02562 * 4 3 2 6 6 C 1.38943 * 119.71272 * 359.97438 * 5 4 3 7 7 N 1.37580 * 134.02687 * 180.29903 * 6 5 4 8 8 H 0.96997 * 126.47005 * 359.93263 * 7 6 5 9 9 C 1.37034 * 107.06251 * 180.02562 * 7 6 5 10 10 C 1.47937 * 125.12870 * 179.90488 * 9 7 6 11 11 O 1.21544 * 120.00365 * 359.71541 * 10 9 7 12 12 N 1.34774 * 120.00205 * 179.71836 * 10 9 7 13 13 C 1.46505 * 120.00423 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.34992 * 35.17680 * 13 12 10 15 15 C 1.52960 * 109.41325 * 155.00104 * 13 12 10 16 16 C 1.53229 * 109.40300 * 183.70598 * 15 13 12 17 17 C 1.51272 * 108.53599 * 305.37310 * 16 15 13 18 18 C 1.37884 * 120.84892 * 231.32604 * 17 16 15 19 19 N 1.31514 * 119.99573 * 0.27570 * 18 17 16 20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 17 16 21 21 H 1.48501 * 109.46758 * 89.99934 * 20 18 17 22 22 H 1.48499 * 109.47026 * 209.99782 * 20 18 17 23 23 H 1.48496 * 109.47474 * 329.99818 * 20 18 17 24 24 C 1.51264 * 118.30209 * 51.59870 * 17 16 15 25 25 C 1.52957 * 109.41184 * 275.35332 * 13 12 10 26 26 N 1.30892 * 109.73826 * 359.63306 * 9 7 6 27 27 C 1.34487 * 109.77458 * 0.23139 * 26 9 7 28 28 H 1.09001 * 109.47505 * 270.02346 * 1 2 3 29 29 H 1.08997 * 109.46756 * 30.02406 * 1 2 3 30 30 H 1.08997 * 109.46731 * 150.02007 * 1 2 3 31 31 H 1.08003 * 119.62753 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.74222 * 180.02562 * 4 3 2 33 33 H 1.08002 * 120.14510 * 179.97438 * 5 4 3 34 34 H 0.97005 * 119.99751 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.48075 * 63.72708 * 15 13 12 36 36 H 1.09001 * 109.49197 * 303.69242 * 15 13 12 37 37 H 1.09004 * 109.62437 * 185.65992 * 16 15 13 38 38 H 1.09000 * 109.62594 * 65.08537 * 16 15 13 39 39 H 0.97004 * 119.99485 * 179.72881 * 19 18 17 40 40 H 1.08996 * 109.62647 * 68.11649 * 24 17 16 41 41 H 1.08998 * 109.62688 * 188.68622 * 24 17 16 42 42 H 1.08995 * 109.48647 * 296.27459 * 25 13 12 43 43 H 1.08997 * 109.48418 * 56.30119 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1809 0.0000 4 6 3.5794 1.1974 0.0005 5 6 4.2933 0.0191 0.0005 6 6 3.6180 -1.1952 0.0006 7 7 4.0177 -2.5116 0.0057 8 1 4.9316 -2.8366 0.0098 9 6 2.8811 -3.2770 0.0019 10 6 2.8508 -4.7561 0.0033 11 8 3.8907 -5.3853 0.0030 12 7 1.6700 -5.4059 0.0049 13 6 1.6400 -6.8707 0.0058 14 1 2.4736 -7.2487 0.5975 15 6 0.3230 -7.3518 0.6171 16 6 0.3305 -8.8817 0.7029 17 6 0.6193 -9.4391 -0.6734 18 6 -0.1948 -10.4020 -1.2314 19 7 -1.2410 -10.8434 -0.5679 20 14 0.1836 -11.0733 -2.9330 21 1 1.0772 -12.2532 -2.8121 22 1 -1.0812 -11.4763 -3.5986 23 1 0.8556 -10.0241 -3.7409 24 6 1.8276 -8.9178 -1.4193 25 6 1.7626 -7.3825 -1.4304 26 7 1.8263 -2.5020 0.0027 27 6 2.2089 -1.2127 0.0018 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6454 2.1133 -0.0004 32 1 4.1040 2.1415 0.0009 33 1 5.3731 0.0391 0.0005 34 1 0.8401 -4.9038 0.0055 35 1 -0.5083 -7.0269 -0.0085 36 1 0.2113 -6.9322 1.6169 37 1 -0.6431 -9.2340 1.0437 38 1 1.1044 -9.2055 1.3988 39 1 -1.8160 -11.5179 -0.9621 40 1 2.7375 -9.2449 -0.9163 41 1 1.8163 -9.2933 -2.4425 42 1 0.8972 -7.0568 -2.0076 43 1 2.6713 -6.9844 -1.8819 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151992870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:48 Heat of formation + Delta-G solvation = 14.083484 kcal Electronic energy + Delta-G solvation = -25165.216996 eV Core-core repulsion = 21595.823690 eV Total energy + Delta-G solvation = -3569.393306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.48772 -39.55781 -37.72377 -36.73976 -34.23172 -33.66930 -31.83398 -31.45956 -29.90423 -29.64569 -27.56060 -26.80572 -24.48130 -22.67987 -22.09824 -21.51867 -21.30259 -20.17431 -19.59917 -18.11741 -17.50082 -16.91531 -16.01596 -15.89547 -15.67033 -15.14032 -14.75948 -14.52279 -14.35171 -13.83220 -13.75327 -13.45720 -13.18224 -12.77340 -12.62863 -12.35729 -12.13287 -11.94453 -11.84275 -11.74517 -11.65312 -11.04501 -10.93807 -10.85861 -10.77509 -10.40376 -10.27967 -10.09615 -9.99124 -9.57577 -9.07374 -8.93663 -8.69489 -8.51309 -8.39225 -8.27254 -6.11807 -4.02879 0.41675 1.22826 1.97465 2.33428 3.25036 3.27393 3.35829 3.36809 3.39865 3.58503 3.95447 4.36569 4.37540 4.63588 4.78303 4.93932 5.02399 5.14235 5.17683 5.30943 5.46545 5.52299 5.65517 5.67504 5.82513 5.90408 6.10950 6.13734 6.15616 6.32425 6.35783 6.46029 6.55089 6.65776 6.68541 6.84944 6.91742 6.95502 7.06476 7.15644 7.39270 7.42114 7.62965 7.67984 7.71623 7.84030 8.23818 8.35954 8.94359 9.52868 10.97590 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.026068 B = 0.002755 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.843012 B =10161.627477 C =10549.426715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.020 4.020 3 C -0.137 4.137 4 C -0.089 4.089 5 C -0.121 4.121 6 C 0.061 3.939 7 N -0.564 5.564 8 H 0.432 0.568 9 C 0.245 3.755 10 C 0.592 3.408 11 O -0.535 6.535 12 N -0.689 5.689 13 C 0.153 3.847 14 H 0.082 0.918 15 C -0.114 4.114 16 C 0.013 3.987 17 C -0.489 4.489 18 C 0.077 3.923 19 N -0.890 5.890 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.264 1.264 24 C -0.018 4.018 25 C -0.114 4.114 26 N -0.448 5.448 27 C 0.045 3.955 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.408 0.592 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.062 0.938 38 H 0.007 0.993 39 H 0.264 0.736 40 H 0.020 0.980 41 H 0.037 0.963 42 H 0.054 0.946 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.796 23.377 1.283 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.021 4.021 3 C -0.158 4.158 4 C -0.109 4.109 5 C -0.141 4.141 6 C -0.052 4.052 7 N -0.174 5.174 8 H 0.273 0.727 9 C -0.023 4.023 10 C 0.374 3.626 11 O -0.411 6.411 12 N -0.338 5.338 13 C 0.051 3.949 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.025 4.025 17 C -0.508 4.508 18 C -0.126 4.126 19 N -0.527 5.527 20 Si 0.715 3.285 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.189 1.189 24 C -0.056 4.056 25 C -0.153 4.153 26 N -0.171 5.171 27 C -0.077 4.077 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.244 0.756 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.489 22.442 1.285 23.397 hybrid contribution 1.133 0.038 -0.952 1.480 sum 7.622 22.480 0.333 23.739 Atomic orbital electron populations 1.20766 0.90273 1.03229 1.02738 1.18971 0.96284 0.89456 0.97439 1.20555 0.94118 0.97207 1.03902 1.20910 0.94006 0.97109 0.98858 1.19968 0.99554 0.88904 1.05723 1.19009 0.95601 0.85124 1.05501 1.42816 1.10170 1.04430 1.60007 0.72723 1.23199 0.81495 0.94455 1.03151 1.16687 0.85341 0.82390 0.78229 1.90840 1.32483 1.66715 1.51106 1.46230 1.07328 1.09224 1.71015 1.21264 1.00416 0.74746 0.98447 0.89959 1.21956 0.94525 1.01164 0.97647 1.19349 0.99048 0.88281 0.95786 1.20054 1.08696 1.20777 1.01315 1.24843 0.94523 0.95758 0.97490 1.69832 1.15157 1.29723 1.38010 0.86679 0.77528 0.79343 0.84924 1.20398 1.21651 1.18934 1.19867 0.97371 0.90941 0.97447 1.21992 0.99384 0.99450 0.94450 1.70058 1.27812 1.00834 1.18444 1.18785 0.90025 0.91715 1.07146 0.90791 0.91401 0.90569 0.85191 0.85070 0.85695 0.75635 0.92370 0.94314 0.91911 0.97478 0.92561 0.96157 0.94502 0.92704 0.94468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.02 36.01 0.36 -0.64 16 2 C -0.02 -0.21 5.88 -104.56 -0.62 -0.83 16 3 C -0.14 -1.14 9.60 -39.98 -0.38 -1.52 16 4 C -0.09 -0.68 10.02 -39.50 -0.40 -1.08 16 5 C -0.12 -1.08 10.07 -39.49 -0.40 -1.48 16 6 C 0.06 0.72 7.30 -84.01 -0.61 0.11 16 7 N -0.56 -6.93 6.24 -8.44 -0.05 -6.98 16 8 H 0.43 4.36 8.96 -40.82 -0.37 3.99 16 9 C 0.24 3.60 7.91 -154.54 -1.22 2.38 16 10 C 0.59 9.90 7.79 -12.29 -0.10 9.81 16 11 O -0.54 -10.20 16.74 5.33 0.09 -10.11 16 12 N -0.69 -11.44 5.07 -54.76 -0.28 -11.72 16 13 C 0.15 2.97 2.35 -67.97 -0.16 2.81 16 14 H 0.08 1.71 7.57 -51.93 -0.39 1.32 16 15 C -0.11 -2.31 5.40 -26.63 -0.14 -2.45 16 16 C 0.01 0.32 5.97 -27.48 -0.16 0.16 16 17 C -0.49 -12.66 5.50 -98.92 -0.54 -13.20 16 18 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 19 N -0.89 -25.18 12.73 55.43 0.71 -24.48 16 20 Si 0.89 20.92 27.52 -169.99 -4.68 16.25 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.26 -6.05 6.12 56.52 0.35 -5.70 16 24 C -0.02 -0.43 5.62 -27.26 -0.15 -0.58 16 25 C -0.11 -2.37 5.52 -26.41 -0.15 -2.52 16 26 N -0.45 -6.56 10.83 -8.79 -0.10 -6.65 16 27 C 0.05 0.60 6.88 -84.98 -0.59 0.01 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 32 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.41 6.12 8.25 -40.82 -0.34 5.79 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.65 7.07 -51.93 -0.37 1.29 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.04 0.86 4.60 -51.93 -0.24 0.62 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -30.28 352.87 -10.31 -40.59 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.96 Total: 4.85 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -5.36 Total: -7.06 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.28 Total: -49.82 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.68 Total: 16.25 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.28 -10.31 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151992870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.671 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds