Wall clock time and date at job start Fri Apr 10 2020 22:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36440 * 120.06197 * 2 1 4 4 C 1.38905 * 120.74611 * 179.97438 * 3 2 1 5 5 C 1.37772 * 120.52243 * 0.02562 * 4 3 2 6 6 C 1.38943 * 119.71272 * 359.97438 * 5 4 3 7 7 N 1.37580 * 134.02687 * 180.29903 * 6 5 4 8 8 H 0.96997 * 126.47005 * 359.93263 * 7 6 5 9 9 C 1.37034 * 107.06251 * 180.02562 * 7 6 5 10 10 C 1.47937 * 125.12870 * 179.90488 * 9 7 6 11 11 O 1.21544 * 120.00365 * 359.71541 * 10 9 7 12 12 N 1.34774 * 120.00205 * 179.71836 * 10 9 7 13 13 C 1.46505 * 120.00423 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.34992 * 35.17680 * 13 12 10 15 15 C 1.52960 * 109.41325 * 155.00104 * 13 12 10 16 16 C 1.53229 * 109.40300 * 183.70598 * 15 13 12 17 17 C 1.51272 * 108.53599 * 305.37310 * 16 15 13 18 18 C 1.37884 * 120.84892 * 231.32604 * 17 16 15 19 19 N 1.31514 * 119.99573 * 0.27570 * 18 17 16 20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 17 16 21 21 H 1.48501 * 109.46758 * 89.99934 * 20 18 17 22 22 H 1.48499 * 109.47026 * 209.99782 * 20 18 17 23 23 H 1.48496 * 109.47474 * 329.99818 * 20 18 17 24 24 C 1.51264 * 118.30209 * 51.59870 * 17 16 15 25 25 C 1.52957 * 109.41184 * 275.35332 * 13 12 10 26 26 N 1.30892 * 109.73826 * 359.63306 * 9 7 6 27 27 C 1.34487 * 109.77458 * 0.23139 * 26 9 7 28 28 H 1.09001 * 109.47505 * 270.02346 * 1 2 3 29 29 H 1.08997 * 109.46756 * 30.02406 * 1 2 3 30 30 H 1.08997 * 109.46731 * 150.02007 * 1 2 3 31 31 H 1.08003 * 119.62753 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.74222 * 180.02562 * 4 3 2 33 33 H 1.08002 * 120.14510 * 179.97438 * 5 4 3 34 34 H 0.97005 * 119.99751 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.48075 * 63.72708 * 15 13 12 36 36 H 1.09001 * 109.49197 * 303.69242 * 15 13 12 37 37 H 1.09004 * 109.62437 * 185.65992 * 16 15 13 38 38 H 1.09000 * 109.62594 * 65.08537 * 16 15 13 39 39 H 0.97004 * 119.99485 * 179.72881 * 19 18 17 40 40 H 1.08996 * 109.62647 * 68.11649 * 24 17 16 41 41 H 1.08998 * 109.62688 * 188.68622 * 24 17 16 42 42 H 1.08995 * 109.48647 * 296.27459 * 25 13 12 43 43 H 1.08997 * 109.48418 * 56.30119 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1809 0.0000 4 6 3.5794 1.1974 0.0005 5 6 4.2933 0.0191 0.0005 6 6 3.6180 -1.1952 0.0006 7 7 4.0177 -2.5116 0.0057 8 1 4.9316 -2.8366 0.0098 9 6 2.8811 -3.2770 0.0019 10 6 2.8508 -4.7561 0.0033 11 8 3.8907 -5.3853 0.0030 12 7 1.6700 -5.4059 0.0049 13 6 1.6400 -6.8707 0.0058 14 1 2.4736 -7.2487 0.5975 15 6 0.3230 -7.3518 0.6171 16 6 0.3305 -8.8817 0.7029 17 6 0.6193 -9.4391 -0.6734 18 6 -0.1948 -10.4020 -1.2314 19 7 -1.2410 -10.8434 -0.5679 20 14 0.1836 -11.0733 -2.9330 21 1 1.0772 -12.2532 -2.8121 22 1 -1.0812 -11.4763 -3.5986 23 1 0.8556 -10.0241 -3.7409 24 6 1.8276 -8.9178 -1.4193 25 6 1.7626 -7.3825 -1.4304 26 7 1.8263 -2.5020 0.0027 27 6 2.2089 -1.2127 0.0018 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6454 2.1133 -0.0004 32 1 4.1040 2.1415 0.0009 33 1 5.3731 0.0391 0.0005 34 1 0.8401 -4.9038 0.0055 35 1 -0.5083 -7.0269 -0.0085 36 1 0.2113 -6.9322 1.6169 37 1 -0.6431 -9.2340 1.0437 38 1 1.1044 -9.2055 1.3988 39 1 -1.8160 -11.5179 -0.9621 40 1 2.7375 -9.2449 -0.9163 41 1 1.8163 -9.2933 -2.4425 42 1 0.8972 -7.0568 -2.0076 43 1 2.6713 -6.9844 -1.8819 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151992870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:48 Heat of formation + Delta-G solvation = -4.467558 kcal Electronic energy + Delta-G solvation = -25166.021430 eV Core-core repulsion = 21595.823690 eV Total energy + Delta-G solvation = -3570.197740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.40003 -40.91765 -38.71263 -38.20311 -35.61874 -34.78909 -33.50051 -32.40449 -31.50511 -30.84120 -29.11936 -27.63798 -25.69396 -23.79929 -23.47129 -23.29692 -22.12952 -21.47022 -21.28611 -19.25501 -18.40271 -18.10944 -17.60810 -17.07901 -16.92059 -16.40918 -16.04820 -15.66819 -15.61432 -15.13223 -14.91119 -14.55958 -14.44244 -14.25156 -14.12272 -13.97900 -13.50425 -13.23529 -12.80749 -12.70100 -12.65130 -12.60823 -12.52680 -12.42065 -12.00903 -11.87970 -11.84181 -11.57717 -11.39855 -11.23403 -10.90014 -10.73131 -10.54790 -10.07729 -9.48438 -9.06255 -8.16710 -6.11111 -0.47078 0.48669 0.97224 1.28311 1.39641 1.42611 1.50247 2.12649 2.30777 2.41415 2.79667 2.89320 3.12056 3.47403 3.88811 3.99226 4.07144 4.14750 4.25651 4.31718 4.39663 4.44766 4.64071 4.69993 4.78013 4.82062 4.86031 4.94252 4.98282 5.02016 5.04982 5.19202 5.23007 5.24037 5.36383 5.47707 5.48395 5.55011 5.61774 5.64326 5.75159 5.80729 5.86750 6.08151 6.28273 6.35004 6.60358 6.92451 6.94528 7.47009 8.93783 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.026068 B = 0.002755 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.843012 B =10161.627477 C =10549.426715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.039 4.039 3 C -0.130 4.130 4 C -0.074 4.074 5 C -0.130 4.130 6 C 0.054 3.946 7 N -0.557 5.557 8 H 0.439 0.561 9 C 0.217 3.783 10 C 0.598 3.402 11 O -0.563 6.563 12 N -0.684 5.684 13 C 0.166 3.834 14 H 0.069 0.931 15 C -0.102 4.102 16 C 0.009 3.991 17 C -0.500 4.500 18 C 0.025 3.975 19 N -0.928 5.928 20 Si 0.938 3.062 21 H -0.276 1.276 22 H -0.291 1.291 23 H -0.251 1.251 24 C -0.020 4.020 25 C -0.107 4.107 26 N -0.457 5.457 27 C 0.009 3.991 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.150 0.850 34 H 0.417 0.583 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.035 0.965 38 H 0.001 0.999 39 H 0.263 0.737 40 H 0.019 0.981 41 H 0.038 0.962 42 H 0.055 0.945 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.980 27.096 0.645 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.041 4.041 3 C -0.150 4.150 4 C -0.093 4.093 5 C -0.150 4.150 6 C -0.059 4.059 7 N -0.168 5.168 8 H 0.281 0.719 9 C -0.050 4.050 10 C 0.381 3.619 11 O -0.441 6.441 12 N -0.333 5.333 13 C 0.063 3.937 14 H 0.087 0.913 15 C -0.140 4.140 16 C -0.029 4.029 17 C -0.519 4.519 18 C -0.173 4.173 19 N -0.568 5.568 20 Si 0.764 3.236 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.176 1.176 24 C -0.058 4.058 25 C -0.146 4.146 26 N -0.181 5.181 27 C -0.113 4.113 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.180 0.820 32 H 0.188 0.812 33 H 0.168 0.832 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.685 26.183 0.645 27.295 hybrid contribution 0.802 -0.904 -0.683 1.388 sum 8.487 25.279 -0.038 26.666 Atomic orbital electron populations 1.20767 0.89550 1.03429 1.03002 1.19324 0.97173 0.89438 0.98146 1.21011 0.94765 0.97500 1.01704 1.21453 0.93919 0.98139 0.95804 1.20397 1.01064 0.88084 1.05487 1.19425 0.95506 0.85561 1.05424 1.42744 1.09939 1.04575 1.59588 0.71893 1.22575 0.82649 0.93324 1.06419 1.16822 0.84617 0.83361 0.77087 1.90814 1.33261 1.67700 1.52309 1.45933 1.08028 1.08003 1.71348 1.20864 0.99215 0.76395 0.97220 0.91311 1.21726 0.95008 0.98219 0.99062 1.19303 0.97238 0.91173 0.95159 1.20603 1.09083 1.20238 1.01950 1.25566 0.94670 0.96365 1.00725 1.69956 1.16438 1.30816 1.39584 0.85853 0.77292 0.79007 0.81433 1.20191 1.21749 1.17574 1.19867 0.96131 0.92708 0.97071 1.21875 0.99693 0.97594 0.95455 1.69949 1.28195 1.01930 1.18037 1.19259 0.91273 0.91799 1.08994 0.90473 0.88976 0.92569 0.81994 0.81202 0.83192 0.74605 0.92420 0.92189 0.94618 0.98038 0.92741 0.96268 0.94373 0.92624 0.93839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.02 71.24 0.71 -1.07 16 2 C -0.04 -0.75 5.88 -19.83 -0.12 -0.87 16 3 C -0.13 -1.63 9.60 22.01 0.21 -1.42 16 4 C -0.07 -0.79 10.02 22.32 0.22 -0.56 16 5 C -0.13 -1.90 10.07 22.33 0.22 -1.67 16 6 C 0.05 1.19 7.30 39.07 0.29 1.47 16 7 N -0.56 -13.37 6.24 -180.61 -1.13 -14.50 16 8 H 0.44 8.65 8.96 -92.71 -0.83 7.82 16 9 C 0.22 6.39 7.91 136.52 1.08 7.47 16 10 C 0.60 20.06 7.79 86.81 0.68 20.74 16 11 O -0.56 -21.57 16.74 -3.85 -0.06 -21.64 16 12 N -0.68 -22.58 5.07 -445.45 -2.26 -24.84 16 13 C 0.17 6.41 2.35 44.96 0.11 6.52 16 14 H 0.07 2.87 7.57 -2.39 -0.02 2.86 16 15 C -0.10 -4.10 5.40 30.66 0.17 -3.94 16 16 C 0.01 0.46 5.97 30.11 0.18 0.64 16 17 C -0.50 -26.15 5.50 -16.17 -0.09 -26.24 16 18 C 0.03 1.38 5.46 84.66 0.46 1.85 16 19 N -0.93 -53.97 12.73 21.45 0.27 -53.70 16 20 Si 0.94 43.16 27.52 68.60 1.89 45.04 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.25 -10.93 6.12 99.48 0.61 -10.32 16 24 C -0.02 -0.92 5.62 30.25 0.17 -0.75 16 25 C -0.11 -4.41 5.52 30.80 0.17 -4.24 16 26 N -0.46 -13.35 10.83 -181.71 -1.97 -15.32 16 27 C 0.01 0.22 6.88 39.85 0.27 0.49 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 30 H 0.06 1.12 8.09 -2.39 -0.02 1.10 16 31 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.17 0.54 8.06 -2.91 -0.02 0.51 16 33 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.42 12.40 8.25 -92.70 -0.76 11.64 16 35 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.04 1.94 7.07 -2.38 -0.02 1.92 16 38 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.04 1.74 4.60 -2.39 -0.01 1.73 16 42 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -67.03 352.87 0.84 -66.19 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -0.64 Total: 20.33 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 4.74 Total: -1.58 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -5.08 Total: -108.35 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.06 Total: -21.64 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.89 Total: 45.04 kcal Total: -67.03 0.84 -66.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151992870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.719 kcal (2) G-P(sol) polarization free energy of solvation -67.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds