Wall clock time and date at job start Fri Apr 10 2020 22:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40175 * 120.19739 * 2 1 4 4 C 1.35263 * 120.12648 * 180.22355 * 3 2 1 5 5 N 1.35956 * 120.63547 * 359.51653 * 4 3 2 6 6 C 1.36587 * 120.66926 * 0.48761 * 5 4 3 7 7 C 1.36291 * 120.19246 * 179.97438 * 2 1 3 8 8 N 1.33201 * 108.60858 * 179.75608 * 6 5 4 9 9 C 1.32336 * 109.81417 * 0.02562 * 8 6 5 10 10 C 1.38289 * 132.39451 * 180.17263 * 5 4 3 11 11 C 1.41816 * 126.79006 * 0.26435 * 10 5 4 12 12 O 1.21777 * 119.99345 * 354.58188 * 11 10 5 13 13 N 1.34776 * 120.00348 * 174.57676 * 11 10 5 14 14 C 1.46497 * 120.00182 * 184.89639 * 13 11 10 15 15 H 1.09004 * 109.41462 * 35.00338 * 14 13 11 16 16 C 1.52955 * 109.41462 * 154.86359 * 14 13 11 17 17 C 1.53232 * 109.40418 * 183.70772 * 16 14 13 18 18 C 1.51273 * 108.53573 * 305.36883 * 17 16 14 19 19 C 1.37874 * 120.85111 * 231.33121 * 18 17 16 20 20 N 1.31511 * 119.99929 * 14.82857 * 19 18 17 21 21 Si 1.86801 * 120.00102 * 194.83259 * 19 18 17 22 22 H 1.48502 * 109.46860 * 357.72282 * 21 19 18 23 23 H 1.48505 * 109.47249 * 117.71760 * 21 19 18 24 24 H 1.48492 * 109.47435 * 237.72087 * 21 19 18 25 25 C 1.51268 * 118.29892 * 51.34640 * 18 17 16 26 26 C 1.52963 * 109.41232 * 275.14538 * 14 13 11 27 27 H 1.09009 * 109.46964 * 270.01828 * 1 2 3 28 28 H 1.08998 * 109.47199 * 30.01420 * 1 2 3 29 29 H 1.08992 * 109.47629 * 150.01992 * 1 2 3 30 30 H 1.07992 * 119.93579 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.68227 * 179.70929 * 4 3 2 32 32 H 1.07991 * 120.30681 * 0.04253 * 7 2 1 33 33 H 1.07999 * 125.89143 * 180.02562 * 9 8 6 34 34 H 0.97000 * 119.99808 * 4.90245 * 13 11 10 35 35 H 1.09000 * 109.48204 * 303.68034 * 16 14 13 36 36 H 1.08998 * 109.48293 * 63.71057 * 16 14 13 37 37 H 1.08997 * 109.62826 * 65.07995 * 17 16 14 38 38 H 1.09005 * 109.62474 * 185.46629 * 17 16 14 39 39 H 0.97001 * 120.00026 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.62702 * 68.36892 * 25 18 17 41 41 H 1.08995 * 109.62856 * 188.93920 * 25 18 17 42 42 H 1.08993 * 109.48249 * 296.27234 * 26 14 13 43 43 H 1.09000 * 109.48329 * 56.31882 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.2115 0.0000 4 6 3.5646 1.2099 -0.0046 5 7 4.2560 0.0392 0.0007 6 6 3.5987 -1.1581 0.0007 7 6 2.1924 -1.1780 0.0005 8 7 4.5008 -2.1382 0.0009 9 6 5.7206 -1.6251 0.0017 10 6 5.6095 -0.2442 0.0010 11 6 6.6736 0.6933 0.0008 12 8 6.4363 1.8835 -0.0994 13 7 7.9474 0.2670 0.1115 14 6 9.0383 1.2388 0.2192 15 1 8.6982 2.1036 0.7891 16 6 10.2256 0.5930 0.9353 17 6 11.3311 1.6360 1.1303 18 6 11.6675 2.2377 -0.2162 19 6 12.9723 2.2977 -0.6577 20 7 13.9016 1.5830 -0.0618 21 14 13.4201 3.3943 -2.1021 22 1 12.1937 4.0466 -2.6272 23 1 14.3811 4.4344 -1.6549 24 1 14.0413 2.5738 -3.1726 25 6 10.5358 2.7722 -1.0657 26 6 9.4603 1.6868 -1.1811 27 1 -0.3633 0.0003 1.0278 28 1 -0.3633 0.8898 -0.5140 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6742 2.1480 -0.0004 31 1 4.1006 2.1475 -0.0093 32 1 1.6606 -2.1179 0.0003 33 1 6.6435 -2.1861 0.0017 34 1 8.1418 -0.6833 0.1197 35 1 9.9040 0.2182 1.9070 36 1 10.6067 -0.2331 0.3349 37 1 10.9816 2.4184 1.8039 38 1 12.2153 1.1578 1.5520 39 1 14.8197 1.6255 -0.3722 40 1 10.1126 3.6599 -0.5954 41 1 10.9101 3.0236 -2.0581 42 1 9.8601 0.8344 -1.7304 43 1 8.5959 2.0877 -1.7105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155346155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:51 Heat of formation + Delta-G solvation = 15.856538 kcal Electronic energy + Delta-G solvation = -25327.375287 eV Core-core repulsion = 21758.058866 eV Total energy + Delta-G solvation = -3569.316421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.01486 -40.82921 -38.83920 -38.38535 -35.59217 -35.09200 -33.60997 -31.92027 -31.45940 -31.05666 -29.40286 -27.77244 -24.89872 -24.74550 -23.68849 -23.30655 -22.43087 -21.53778 -21.26583 -19.34352 -18.09044 -17.94992 -17.53137 -17.34080 -16.84024 -16.37413 -16.10813 -15.72920 -15.60597 -15.33648 -15.00452 -14.75147 -14.53853 -14.27696 -14.14056 -13.90320 -13.49028 -13.45798 -13.02503 -12.87507 -12.81806 -12.77882 -12.69606 -12.54407 -11.90103 -11.79901 -11.60734 -11.57455 -11.39935 -11.10053 -10.91142 -10.70134 -10.44356 -10.05930 -9.92736 -8.93551 -8.19493 -6.07821 -0.37240 -0.26029 1.20389 1.26223 1.36951 1.43425 1.52077 2.27658 2.36276 2.39678 2.42013 3.03688 3.08503 3.42775 3.67235 3.72602 3.84286 4.03135 4.06833 4.20161 4.28064 4.37494 4.48677 4.66684 4.72547 4.75500 4.84705 4.86439 4.92865 4.98015 5.07529 5.11859 5.20317 5.23116 5.24309 5.27448 5.36869 5.50668 5.55774 5.56708 5.67670 5.74829 5.83982 5.85205 6.35855 6.47212 6.61457 6.94611 7.17040 7.47631 8.91266 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.032167 B = 0.002734 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.235313 B =10239.936694 C =10681.325152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.038 4.038 3 C -0.123 4.123 4 C 0.047 3.953 5 N -0.333 5.333 6 C 0.233 3.767 7 C -0.110 4.110 8 N -0.523 5.523 9 C 0.117 3.883 10 C -0.177 4.177 11 C 0.595 3.405 12 O -0.595 6.595 13 N -0.701 5.701 14 C 0.173 3.827 15 H 0.058 0.942 16 C -0.100 4.100 17 C 0.008 3.992 18 C -0.503 4.503 19 C 0.030 3.970 20 N -0.920 5.920 21 Si 0.928 3.072 22 H -0.248 1.248 23 H -0.285 1.285 24 H -0.283 1.283 25 C -0.017 4.017 26 C -0.104 4.104 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.191 0.809 31 H 0.165 0.835 32 H 0.176 0.824 33 H 0.219 0.781 34 H 0.412 0.588 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.000 1.000 38 H 0.034 0.966 39 H 0.264 0.736 40 H 0.010 0.990 41 H 0.036 0.964 42 H 0.055 0.945 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.154 -5.663 -0.042 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.045 4.045 3 C -0.143 4.143 4 C -0.078 4.078 5 N -0.002 5.002 6 C -0.006 4.006 7 C -0.130 4.130 8 N -0.243 5.243 9 C -0.044 4.044 10 C -0.290 4.290 11 C 0.385 3.615 12 O -0.479 6.479 13 N -0.351 5.351 14 C 0.069 3.931 15 H 0.076 0.924 16 C -0.139 4.139 17 C -0.030 4.030 18 C -0.522 4.522 19 C -0.169 4.169 20 N -0.559 5.559 21 Si 0.754 3.246 22 H -0.172 1.172 23 H -0.211 1.211 24 H -0.209 1.209 25 C -0.056 4.056 26 C -0.143 4.143 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.208 0.792 31 H 0.182 0.818 32 H 0.193 0.807 33 H 0.235 0.765 34 H 0.249 0.751 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.018 0.982 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.029 0.971 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -27.253 -5.658 -0.085 27.835 hybrid contribution 1.574 1.081 -0.582 1.996 sum -25.679 -4.577 -0.667 26.092 Atomic orbital electron populations 1.20929 0.86226 1.05134 1.04417 1.20358 0.99221 0.90910 0.94006 1.21378 0.90593 1.01468 1.00862 1.22289 0.94323 0.89081 1.02085 1.42542 1.06307 1.08379 1.42985 1.21675 0.95765 0.79975 1.03153 1.20558 0.86632 1.01658 1.04174 1.70520 0.99486 1.29308 1.24971 1.23674 0.97473 0.88889 0.94351 1.19811 0.82955 0.96568 1.29697 1.15651 0.82731 0.86770 0.76347 1.90765 1.85006 1.18537 1.53563 1.45756 1.04696 1.11161 1.73531 1.20662 0.85233 0.90729 0.96516 0.92420 1.21695 0.94547 0.99028 0.98581 1.19320 0.94606 0.93825 0.95235 1.20516 0.91048 1.37698 1.02961 1.25505 0.96224 0.96018 0.99163 1.70004 1.02317 1.39516 1.44066 0.85985 0.78463 0.79924 0.80183 1.17232 1.21118 1.20903 1.19798 0.94408 0.94550 0.96802 1.21765 0.97197 0.99369 0.96001 0.88822 0.89080 0.89527 0.79218 0.81792 0.80692 0.76459 0.75127 0.92228 0.92329 0.98185 0.94705 0.92720 0.97107 0.94511 0.92640 0.94423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.42 10.02 71.23 0.71 0.29 16 2 C -0.04 -0.46 5.88 -19.85 -0.12 -0.57 16 3 C -0.12 -1.71 9.68 22.05 0.21 -1.49 16 4 C 0.05 1.07 10.51 83.37 0.88 1.94 16 5 N -0.33 -9.13 2.96 -344.19 -1.02 -10.15 16 6 C 0.23 5.85 7.77 134.00 1.04 6.89 16 7 C -0.11 -1.84 9.75 22.40 0.22 -1.62 16 8 N -0.52 -14.17 11.25 -192.72 -2.17 -16.34 16 9 C 0.12 2.97 11.32 84.69 0.96 3.93 16 10 C -0.18 -5.27 6.83 39.08 0.27 -5.01 16 11 C 0.59 20.39 7.55 85.13 0.64 21.04 16 12 O -0.60 -24.31 15.00 -4.59 -0.07 -24.38 16 13 N -0.70 -22.27 5.05 -451.42 -2.28 -24.55 16 14 C 0.17 6.70 2.31 44.96 0.10 6.80 16 15 H 0.06 2.50 7.65 -2.38 -0.02 2.48 16 16 C -0.10 -4.00 5.40 30.66 0.17 -3.84 16 17 C 0.01 0.40 5.99 30.11 0.18 0.58 16 18 C -0.50 -26.42 5.45 -16.17 -0.09 -26.51 16 19 C 0.03 1.65 5.43 84.65 0.46 2.11 16 20 N -0.92 -53.01 12.81 21.45 0.27 -52.74 16 21 Si 0.93 42.95 27.82 68.60 1.91 44.86 16 22 H -0.25 -10.96 5.86 99.48 0.58 -10.38 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 25 C -0.02 -0.83 5.49 30.11 0.17 -0.66 16 26 C -0.10 -4.38 5.50 30.66 0.17 -4.21 16 27 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 28 H 0.09 0.12 8.10 -2.39 -0.02 0.10 16 29 H 0.09 0.19 8.08 -2.39 -0.02 0.17 16 30 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 31 H 0.16 4.13 6.81 -2.91 -0.02 4.11 16 32 H 0.18 2.03 8.06 -2.92 -0.02 2.01 16 33 H 0.22 3.81 7.38 -2.91 -0.02 3.79 16 34 H 0.41 10.25 7.39 -92.71 -0.69 9.56 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.03 1.87 7.11 -2.38 -0.02 1.86 16 39 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.04 1.72 4.85 -2.39 -0.01 1.70 16 42 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.04 1.57 8.07 -2.39 -0.02 1.55 16 Total: -1.00 -72.04 348.56 2.85 -69.19 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.23 Total: 14.43 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 5.97 Total: -0.32 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -5.19 Total: -103.78 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.07 Total: -24.38 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.91 Total: 44.86 kcal Total: -72.04 2.85 -69.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155346155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.042 kcal (2) G-P(sol) polarization free energy of solvation -72.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds