Wall clock time and date at job start Fri Apr 10 2020 22:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46896 * 2 1 4 4 H 1.09005 * 109.46668 * 305.00029 * 3 2 1 5 5 C 1.50697 * 109.46890 * 185.00104 * 3 2 1 6 6 H 1.08001 * 120.00096 * 239.99580 * 5 3 2 7 7 C 1.37880 * 120.00122 * 60.00314 * 5 3 2 8 8 N 1.31516 * 119.99969 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99828 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47231 * 60.00086 * 9 7 5 11 11 H 1.48499 * 109.47019 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47227 * 299.99775 * 9 7 5 13 13 N 1.46500 * 109.47064 * 65.00067 * 3 2 1 14 14 C 1.34774 * 119.99979 * 274.99983 * 13 3 2 15 15 O 1.21613 * 120.00288 * 0.02562 * 14 13 3 16 16 C 1.47414 * 120.00152 * 180.02562 * 14 13 3 17 17 C 1.41332 * 126.40595 * 359.97438 * 16 14 13 18 18 N 1.30479 * 108.06441 * 180.02562 * 17 16 14 19 19 N 1.39929 * 108.91559 * 359.97438 * 18 17 16 20 20 C 1.40152 * 125.76985 * 180.02562 * 19 18 17 21 21 C 1.38848 * 120.07002 * 325.02342 * 20 19 18 22 22 C 1.38112 * 119.93519 * 180.02562 * 21 20 19 23 23 C 1.38285 * 120.06839 * 0.02562 * 22 21 20 24 24 C 1.38276 * 120.13278 * 0.02562 * 23 22 21 25 25 C 1.38122 * 120.07202 * 359.97438 * 24 23 22 26 26 C 1.34535 * 108.45850 * 0.26565 * 19 18 17 27 27 C 1.50704 * 126.30935 * 179.71239 * 26 19 18 28 28 H 1.09005 * 109.46677 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47157 * 299.99595 * 1 2 3 30 30 H 1.08999 * 109.47018 * 60.00337 * 1 2 3 31 31 H 1.08994 * 109.47157 * 240.00405 * 2 1 3 32 32 H 1.08995 * 109.47382 * 119.99997 * 2 1 3 33 33 H 0.96997 * 119.99805 * 180.02562 * 8 7 5 34 34 H 0.97003 * 120.00022 * 94.99710 * 13 3 2 35 35 H 1.07998 * 125.97210 * 359.97383 * 17 16 14 36 36 H 1.08001 * 120.03246 * 0.02562 * 21 20 19 37 37 H 1.08000 * 119.96928 * 180.02562 * 22 21 20 38 38 H 1.07994 * 119.93476 * 179.72405 * 23 22 21 39 39 H 1.08006 * 119.96761 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.03736 * 180.02562 * 25 24 23 41 41 H 1.09006 * 109.46593 * 90.00543 * 27 26 19 42 42 H 1.09004 * 109.46773 * 209.99674 * 27 26 19 43 43 H 1.08993 * 109.47426 * 329.99950 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1730 9 14 6.0049 0.8814 -1.3818 10 1 6.5975 0.1474 -0.2350 11 1 6.3978 0.2169 -2.6504 12 1 6.4994 2.2817 -1.3822 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3418 2.6318 0.4319 16 6 0.0453 3.3239 2.6264 17 6 0.8360 3.4402 3.7921 18 7 0.1428 4.0873 4.6883 19 7 -1.1063 4.4124 4.1478 20 6 -2.1282 5.1088 4.8073 21 6 -2.3252 4.9293 6.1700 22 6 -3.3333 5.6166 6.8171 23 6 -4.1466 6.4825 6.1091 24 6 -3.9536 6.6625 4.7518 25 6 -2.9471 5.9781 4.0990 26 6 -1.1624 3.9388 2.8898 27 6 -2.3279 4.0595 1.9420 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8293 -0.0616 -2.9496 34 1 2.2719 2.1232 1.9978 35 1 1.8385 3.0591 3.9192 36 1 -1.6906 4.2529 6.7234 37 1 -3.4868 5.4778 7.8771 38 1 -4.9371 7.0154 6.6164 39 1 -4.5906 7.3392 4.2014 40 1 -2.7966 6.1194 3.0389 41 1 -2.2308 4.9773 1.3620 42 1 -2.3381 3.2031 1.2678 43 1 -3.2574 4.0854 2.5105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183848782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:46 Heat of formation + Delta-G solvation = 61.437171 kcal Electronic energy + Delta-G solvation = -25378.597859 eV Core-core repulsion = 21811.257963 eV Total energy + Delta-G solvation = -3567.339896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73726 -39.34223 -38.43994 -34.99169 -33.94678 -32.30339 -32.25657 -31.13367 -30.89066 -29.18065 -27.59284 -26.57722 -23.70860 -23.35918 -22.90736 -21.89001 -20.59687 -19.59890 -19.19144 -17.84022 -17.03683 -16.48070 -15.88880 -15.43796 -15.22137 -15.14119 -14.54231 -14.33064 -14.21165 -14.03014 -13.80832 -13.25290 -13.05223 -12.98469 -12.75153 -12.61898 -12.27215 -11.92597 -11.83288 -11.55573 -11.45571 -11.20811 -10.96616 -10.80461 -10.78509 -10.29008 -10.23001 -10.12034 -9.58130 -9.38511 -9.03650 -8.96590 -8.90627 -8.45507 -8.31627 -7.71394 -6.08845 -4.17818 0.59945 0.95267 1.81100 2.20721 2.35162 3.28085 3.33314 3.34520 3.35873 4.11348 4.16597 4.36667 4.48556 4.49914 4.57116 4.72942 4.78034 4.96266 4.97844 5.16900 5.22561 5.31922 5.40213 5.53145 5.60133 5.67494 5.94312 5.95468 6.00574 6.08809 6.17545 6.38554 6.44416 6.50791 6.52216 6.72185 7.01994 7.10913 7.25286 7.42436 7.52805 7.53099 7.67111 7.80276 7.95868 8.22883 8.75289 8.83396 9.22649 9.49876 10.96467 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.028524 B = 0.002834 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.404665 B = 9877.033953 C =10324.743003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.703 5.703 14 C 0.580 3.420 15 O -0.553 6.553 16 C -0.273 4.273 17 C 0.090 3.910 18 N -0.298 5.298 19 N -0.323 5.323 20 C 0.155 3.845 21 C -0.110 4.110 22 C -0.102 4.102 23 C -0.124 4.124 24 C -0.099 4.099 25 C -0.131 4.131 26 C 0.148 3.852 27 C -0.100 4.100 28 H 0.021 0.979 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.195 0.805 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.749 9.951 15.242 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.366 3.634 15 O -0.434 6.434 16 C -0.287 4.287 17 C -0.098 4.098 18 N -0.115 5.115 19 N -0.098 5.098 20 C 0.064 3.936 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.143 4.143 24 C -0.118 4.118 25 C -0.151 4.151 26 C 0.021 3.979 27 C -0.158 4.158 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.212 0.788 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.293 10.297 15.574 23.513 hybrid contribution 1.550 -0.382 -0.426 1.652 sum -12.743 9.915 15.148 22.140 Atomic orbital electron populations 1.21837 0.98376 0.97921 1.01274 1.21933 0.92634 0.99844 1.02211 1.18767 0.94072 0.89114 0.80915 0.93213 1.21208 0.90791 1.38949 1.06247 0.92148 1.24873 0.98495 0.94854 0.95412 1.69885 1.35154 1.37610 1.09359 0.86533 0.85011 0.78287 0.77414 1.20185 1.21187 1.20215 1.46280 1.14268 1.55925 1.18462 1.17065 0.82753 0.78360 0.85267 1.90698 1.51564 1.61223 1.39870 1.20486 0.95493 1.14313 0.98375 1.24230 0.99839 0.95370 0.90356 1.77242 0.90669 1.21231 1.22380 1.45584 1.11593 1.42678 1.09927 1.17506 0.88907 0.94820 0.92386 1.21040 0.98626 1.00664 0.92647 1.21081 0.94654 0.96115 1.00249 1.21265 0.99783 0.98821 0.94400 1.21026 0.97205 0.98898 0.94664 1.21208 0.96758 0.96089 1.01070 1.21603 0.97146 0.93688 0.85460 1.20817 0.92004 1.05930 0.97052 0.96026 0.94184 0.93136 0.88350 0.95081 0.92557 0.78151 0.78813 0.84814 0.85084 0.85399 0.84918 0.84701 0.89563 0.87011 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.81 2.24 -69.08 -0.15 6.65 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.61 11.29 55.43 0.63 -23.99 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.70 -14.60 5.01 -56.01 -0.28 -14.88 16 14 C 0.58 11.69 6.38 -12.53 -0.08 11.61 16 15 O -0.55 -12.45 11.98 5.27 0.06 -12.39 16 16 C -0.27 -4.63 6.13 -105.05 -0.64 -5.27 16 17 C 0.09 1.35 11.50 -16.95 -0.19 1.15 16 18 N -0.30 -4.56 12.25 30.87 0.38 -4.19 16 19 N -0.32 -4.68 3.71 -6.51 -0.02 -4.70 16 20 C 0.16 1.87 6.26 -83.60 -0.52 1.35 16 21 C -0.11 -1.15 9.75 -39.40 -0.38 -1.54 16 22 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 23 C -0.12 -0.86 10.04 -39.55 -0.40 -1.26 16 24 C -0.10 -0.75 10.04 -39.61 -0.40 -1.15 16 25 C -0.13 -1.29 8.25 -39.40 -0.33 -1.61 16 26 C 0.15 2.27 6.83 -81.47 -0.56 1.71 16 27 C -0.10 -1.28 8.04 36.01 0.29 -0.99 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 30 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 31 H 0.10 2.63 5.95 -51.93 -0.31 2.33 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.39 7.00 7.49 -40.82 -0.31 6.69 16 35 H 0.20 2.30 7.50 -52.49 -0.39 1.91 16 36 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 40 H 0.14 1.24 6.07 -52.49 -0.32 0.92 16 41 H 0.09 0.99 7.72 -51.93 -0.40 0.59 16 42 H 0.11 1.66 6.52 -51.93 -0.34 1.32 16 43 H 0.07 0.73 6.87 -51.93 -0.36 0.37 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -31.39 352.34 -8.53 -39.92 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.59 Total: 8.44 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -3.99 Total: -9.09 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.70 Total: -47.75 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.06 Total: -12.39 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.39 -8.53 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183848782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.362 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds