Wall clock time and date at job start Fri Apr 10 2020 22:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47110 * 2 1 4 4 H 1.09001 * 109.47222 * 54.99498 * 3 2 1 5 5 C 1.50695 * 109.47157 * 174.99955 * 3 2 1 6 6 H 1.08004 * 119.99882 * 120.00099 * 5 3 2 7 7 C 1.37873 * 120.00077 * 300.00031 * 5 3 2 8 8 N 1.31518 * 120.00179 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99939 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47023 * 90.00171 * 9 7 5 11 11 H 1.48502 * 109.47065 * 210.00065 * 9 7 5 12 12 H 1.48496 * 109.47195 * 329.99770 * 9 7 5 13 13 N 1.46500 * 109.47254 * 295.00242 * 3 2 1 14 14 C 1.34774 * 120.00451 * 84.99894 * 13 3 2 15 15 O 1.21583 * 119.99863 * 359.97438 * 14 13 3 16 16 C 1.47662 * 120.00331 * 180.02562 * 14 13 3 17 17 N 1.31857 * 126.44542 * 0.33336 * 16 14 13 18 18 N 1.28471 * 110.12387 * 180.14262 * 17 16 14 19 19 C 1.40120 * 124.96128 * 179.82813 * 18 17 16 20 20 C 1.38853 * 120.06285 * 359.69560 * 19 18 17 21 21 C 1.38115 * 119.93104 * 179.97438 * 20 19 18 22 22 C 1.38287 * 120.06645 * 359.97438 * 21 20 19 23 23 C 1.38284 * 120.13653 * 0.02562 * 22 21 20 24 24 C 1.38115 * 120.07083 * 359.97438 * 23 22 21 25 25 C 1.35859 * 110.08302 * 359.56332 * 18 17 16 26 26 C 1.35358 * 107.12420 * 0.26418 * 25 18 17 27 27 C 1.50697 * 127.22335 * 179.97438 * 26 25 18 28 28 H 1.09000 * 109.47288 * 300.00097 * 1 2 3 29 29 H 1.08999 * 109.47315 * 59.99620 * 1 2 3 30 30 H 1.09003 * 109.47160 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46864 * 240.00178 * 2 1 3 32 32 H 1.08993 * 109.47159 * 119.99710 * 2 1 3 33 33 H 0.96999 * 120.00149 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99880 * 265.00204 * 13 3 2 35 35 H 1.07997 * 120.03845 * 0.02562 * 20 19 18 36 36 H 1.07997 * 119.97127 * 179.72303 * 21 20 19 37 37 H 1.07995 * 119.93399 * 179.97438 * 22 21 20 38 38 H 1.08008 * 119.96555 * 180.02562 * 23 22 21 39 39 H 1.07997 * 120.03412 * 180.02562 * 24 23 22 40 40 H 1.07999 * 126.44307 * 180.22403 * 25 18 17 41 41 H 1.08996 * 109.47121 * 90.02431 * 27 26 25 42 42 H 1.08995 * 109.47602 * 210.02453 * 27 26 25 43 43 H 1.09005 * 109.46820 * 330.02672 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 5.4539 0.8805 1.3363 9 14 3.0962 0.1101 2.5707 10 1 2.8744 -1.3259 2.2646 11 1 3.7941 0.2361 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3416 2.6319 -0.4321 16 6 0.0443 3.3242 -2.6289 17 7 0.7787 3.4272 -3.7191 18 7 0.1329 4.0647 -4.6285 19 6 0.6234 4.3529 -5.9090 20 6 1.9004 3.9467 -6.2725 21 6 2.3809 4.2317 -7.5356 22 6 1.5913 4.9205 -8.4381 23 6 0.3191 5.3263 -8.0790 24 6 -0.1671 5.0443 -6.8174 25 6 -1.0972 4.4136 -4.1694 26 6 -1.1918 3.9591 -2.8979 27 6 -2.3663 4.1001 -1.9644 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8899 33 1 5.8770 0.4820 2.1129 34 1 2.2718 2.1232 -1.9978 35 1 2.5171 3.4076 -5.5685 36 1 3.3758 3.9200 -7.8174 37 1 1.9694 5.1426 -9.4250 38 1 -0.2954 5.8638 -8.7863 39 1 -1.1609 5.3612 -6.5378 40 1 -1.8568 4.9529 -4.7159 41 1 -3.0311 3.2448 -2.0852 42 1 -2.0098 4.1405 -0.9352 43 1 -2.9078 5.0170 -2.1976 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186375226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:44 Heat of formation + Delta-G solvation = 74.459219 kcal Electronic energy + Delta-G solvation = -25463.661018 eV Core-core repulsion = 21896.885800 eV Total energy + Delta-G solvation = -3566.775218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.90656 -39.47441 -38.80509 -35.35383 -34.01896 -32.65874 -32.10601 -31.47019 -31.19715 -29.51946 -27.58307 -27.05922 -24.60817 -23.05144 -22.63789 -21.77294 -20.67662 -19.96839 -19.43388 -18.48317 -17.40668 -16.47359 -16.24079 -16.06309 -15.54983 -15.11754 -14.77637 -14.57068 -14.21062 -13.97393 -13.56755 -13.39545 -13.18023 -13.10998 -12.88282 -12.69830 -12.31288 -12.12614 -11.92512 -11.86337 -11.74126 -11.51253 -11.05578 -10.85594 -10.71167 -10.57725 -10.13814 -9.87616 -9.57158 -9.40955 -9.24012 -9.16573 -9.07302 -8.71233 -8.32774 -7.98653 -6.16591 -4.18805 0.51674 0.94384 1.97223 2.18228 2.28487 3.26999 3.38611 3.42096 3.43949 3.90439 3.92510 4.22075 4.35499 4.43631 4.61742 4.66209 4.79020 4.96648 5.14555 5.16785 5.20048 5.26027 5.47077 5.54586 5.61182 5.85816 5.88101 5.94270 6.02067 6.06949 6.07716 6.10551 6.22283 6.22607 6.37760 6.57927 6.72132 6.74253 6.87643 6.89537 7.01159 7.32120 7.33671 7.54995 7.84986 8.23405 8.59087 8.80821 8.96384 9.43979 10.95544 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017054 B = 0.003509 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.463573 B = 7978.677591 C = 9242.183215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.684 5.684 14 C 0.589 3.411 15 O -0.538 6.538 16 C 0.010 3.990 17 N -0.258 5.258 18 N -0.240 5.240 19 C 0.144 3.856 20 C -0.110 4.110 21 C -0.097 4.097 22 C -0.126 4.126 23 C -0.098 4.098 24 C -0.132 4.132 25 C -0.029 4.029 26 C -0.136 4.136 27 C -0.078 4.078 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.267 0.733 34 H 0.401 0.599 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.181 0.819 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.626 8.385 -19.027 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.183 1.183 13 N -0.331 5.331 14 C 0.372 3.628 15 O -0.415 6.415 16 C -0.153 4.153 17 N -0.090 5.090 18 N -0.022 5.022 19 C 0.053 3.947 20 C -0.130 4.130 21 C -0.115 4.115 22 C -0.144 4.144 23 C -0.117 4.117 24 C -0.153 4.153 25 C -0.168 4.168 26 C -0.146 4.146 27 C -0.136 4.136 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.235 0.765 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.198 0.802 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.927 8.024 -18.694 23.582 hybrid contribution -0.780 -0.265 0.540 0.985 sum -12.707 7.759 -18.154 23.478 Atomic orbital electron populations 1.21881 0.96887 0.99075 1.02316 1.22288 0.94433 0.99856 1.01151 1.19208 0.95751 0.88545 0.82588 0.93071 1.21054 0.88570 1.39687 1.07856 0.90149 1.24828 0.94875 0.95159 0.97643 1.69872 1.08688 1.44575 1.29823 0.86904 0.81023 0.79965 0.80853 1.20238 1.22210 1.18342 1.46082 1.14337 1.54546 1.18152 1.16822 0.82894 0.78672 0.84395 1.90738 1.51828 1.60363 1.38525 1.22411 0.93608 1.05010 0.94258 1.73584 1.23887 1.13728 0.97764 1.42591 1.10918 1.39077 1.09581 1.17699 0.94891 1.00529 0.81587 1.21090 0.93898 1.00332 0.97684 1.21144 1.00266 0.97565 0.92539 1.21294 0.94430 0.98634 1.00051 1.20979 0.96058 0.99392 0.95235 1.20843 1.00164 1.00589 0.93664 1.22688 0.90000 1.07826 0.96301 1.20449 0.97111 1.02391 0.94638 1.20195 0.93282 1.01039 0.99066 0.92744 0.92919 0.94964 0.92262 0.92696 0.92326 0.76528 0.83802 0.84745 0.85320 0.84926 0.85003 0.80182 0.91368 0.89368 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.66 16 2 C -0.14 -3.17 5.11 -26.73 -0.14 -3.30 16 3 C 0.24 5.92 1.83 -69.08 -0.13 5.79 16 4 H 0.05 1.36 6.63 -51.93 -0.34 1.01 16 5 C -0.53 -14.79 9.31 -34.44 -0.32 -15.11 16 6 H 0.08 2.36 7.98 -52.48 -0.42 1.94 16 7 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 8 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 9 Si 0.88 21.99 24.41 -169.99 -4.15 17.84 16 10 H -0.28 -6.65 6.83 56.52 0.39 -6.26 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 13 N -0.68 -14.76 5.02 -55.94 -0.28 -15.04 16 14 C 0.59 12.12 6.39 -12.41 -0.08 12.04 16 15 O -0.54 -11.87 12.23 5.29 0.06 -11.80 16 16 C 0.01 0.17 7.13 -82.75 -0.59 -0.42 16 17 N -0.26 -4.30 10.85 33.42 0.36 -3.94 16 18 N -0.24 -3.34 3.52 -10.55 -0.04 -3.38 16 19 C 0.14 1.67 6.66 -83.61 -0.56 1.11 16 20 C -0.11 -1.23 9.59 -39.40 -0.38 -1.61 16 21 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 22 C -0.13 -0.87 10.04 -39.55 -0.40 -1.27 16 23 C -0.10 -0.67 10.04 -39.61 -0.40 -1.07 16 24 C -0.13 -1.12 9.43 -39.40 -0.37 -1.50 16 25 C -0.03 -0.36 10.73 -16.79 -0.18 -0.54 16 26 C -0.14 -2.02 6.25 -104.39 -0.65 -2.67 16 27 C -0.08 -0.99 9.92 36.00 0.36 -0.64 16 28 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 29 H 0.05 1.08 5.64 -51.93 -0.29 0.79 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.05 1.30 3.22 -51.93 -0.17 1.14 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.40 8.21 8.26 -40.82 -0.34 7.88 16 35 H 0.14 1.75 7.65 -52.49 -0.40 1.35 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 39 H 0.13 0.84 6.65 -52.49 -0.35 0.49 16 40 H 0.18 1.42 6.96 -52.49 -0.37 1.06 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.32 6.71 -51.93 -0.35 0.98 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -32.70 349.47 -7.58 -40.28 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.57 Total: 7.71 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -4.01 Total: -10.90 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.82 Total: -48.40 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.06 Total: -11.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.15 Total: 17.84 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.70 -7.58 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186375226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.740 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds