Wall clock time and date at job start Fri Apr 10 2020 22:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21274 * 119.99855 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99767 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.47137 * 59.99859 * 16 14 13 18 18 C 1.50700 * 109.47167 * 179.97438 * 16 14 13 19 19 C 1.38233 * 119.99653 * 59.72473 * 18 16 14 20 20 C 1.38243 * 119.99679 * 179.78951 * 19 18 16 21 21 C 1.38233 * 119.99552 * 0.44411 * 20 19 18 22 22 C 1.38236 * 120.00464 * 359.80937 * 21 20 19 23 23 C 1.38233 * 119.99907 * 359.97438 * 22 21 20 24 24 N 1.46501 * 109.47291 * 299.99845 * 16 14 13 25 25 C 1.34951 * 126.03248 * 325.00285 * 24 16 14 26 26 C 1.35322 * 107.74188 * 179.97438 * 25 24 16 27 27 C 1.39874 * 107.92323 * 359.97438 * 26 25 24 28 28 N 1.30842 * 108.19886 * 359.74019 * 27 26 25 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 36 36 H 1.07997 * 120.00412 * 359.97438 * 19 18 16 37 37 H 1.07997 * 119.99828 * 180.27558 * 20 19 18 38 38 H 1.08001 * 119.99418 * 179.83448 * 21 20 19 39 39 H 1.08005 * 119.99899 * 179.97438 * 22 21 20 40 40 H 1.07991 * 120.00176 * 179.97438 * 23 22 21 41 41 H 1.07994 * 126.13119 * 359.97438 * 25 24 16 42 42 H 1.07999 * 126.04128 * 179.97438 * 26 25 24 43 43 H 1.07996 * 125.90315 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3395 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6546 17 1 0.0680 2.6143 -3.4688 18 6 -1.3613 3.8858 -2.5234 19 6 -1.6481 4.8223 -1.5479 20 6 -2.9294 5.3277 -1.4304 21 6 -3.9259 4.8896 -2.2824 22 6 -3.6403 3.9492 -3.2544 23 6 -2.3580 3.4472 -3.3749 24 7 0.9659 4.4345 -2.9399 25 6 1.5542 5.2347 -2.0262 26 6 2.3366 6.1154 -2.6922 27 6 2.2231 5.8436 -4.0596 28 7 1.4063 4.8325 -4.2088 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 5.8770 0.4827 2.1133 35 1 2.2720 2.1231 -1.9978 36 1 -0.8705 5.1615 -0.8796 37 1 -3.1525 6.0626 -0.6712 38 1 -4.9276 5.2824 -2.1888 39 1 -4.4191 3.6066 -3.9198 40 1 -2.1349 2.7122 -4.1340 41 1 1.4238 5.1818 -0.9555 42 1 2.9418 6.8910 -2.2466 43 1 2.7260 6.3741 -4.8545 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273831811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:09 Heat of formation + Delta-G solvation = 60.672701 kcal Electronic energy + Delta-G solvation = -26474.556633 eV Core-core repulsion = 22907.183586 eV Total energy + Delta-G solvation = -3567.373046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.49540 -40.97757 -39.83534 -37.27054 -35.28550 -34.42824 -33.16256 -31.96692 -31.47318 -30.92296 -29.63349 -27.82505 -24.73218 -23.74216 -23.31528 -22.83962 -21.94007 -21.70816 -21.08623 -19.42555 -18.50726 -18.07371 -17.52849 -17.38026 -16.63971 -16.31459 -16.00829 -15.64032 -15.47218 -15.19624 -15.01081 -14.84605 -14.38879 -14.25221 -14.12353 -13.84612 -13.74239 -13.58351 -13.50826 -13.46012 -12.97305 -12.81168 -12.46162 -12.24397 -12.00333 -11.89072 -11.75607 -11.43894 -11.29632 -11.01655 -10.89221 -10.43962 -9.92736 -9.85734 -9.80887 -9.56656 -8.40244 -6.46774 0.19845 0.47765 0.87677 1.01086 1.25522 1.33554 1.42442 1.89830 1.96374 2.12275 2.23265 2.90788 2.95303 3.35771 3.49962 3.69437 3.89582 3.99624 4.11062 4.18281 4.20045 4.24169 4.28180 4.41121 4.56620 4.60860 4.66315 4.76798 4.82804 4.95566 4.96859 5.06512 5.08734 5.14125 5.16805 5.31312 5.46596 5.47936 5.51496 5.53540 5.56220 5.74232 5.90762 6.03770 6.07133 6.52823 6.65529 6.71614 7.07210 7.23826 8.75098 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.004892 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.587947 B = 5722.645840 C = 6978.736257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 C 0.254 3.746 4 H 0.029 0.971 5 C -0.534 4.534 6 H 0.051 0.949 7 C 0.033 3.967 8 N -0.932 5.932 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.294 1.294 12 H -0.257 1.257 13 N -0.688 5.688 14 C 0.505 3.495 15 O -0.542 6.542 16 C 0.194 3.806 17 H 0.139 0.861 18 C -0.107 4.107 19 C -0.091 4.091 20 C -0.135 4.135 21 C -0.110 4.110 22 C -0.126 4.126 23 C -0.105 4.105 24 N -0.367 5.367 25 C 0.049 3.951 26 C -0.271 4.271 27 C 0.050 3.950 28 N -0.315 5.315 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.270 0.730 35 H 0.401 0.599 36 H 0.101 0.899 37 H 0.137 0.863 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.141 0.859 41 H 0.160 0.840 42 H 0.167 0.833 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.833 7.948 -10.131 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C 0.149 3.851 4 H 0.047 0.953 5 C -0.572 4.572 6 H 0.069 0.931 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.763 3.237 10 H -0.186 1.186 11 H -0.221 1.221 12 H -0.181 1.181 13 N -0.336 5.336 14 C 0.288 3.712 15 O -0.419 6.419 16 C 0.089 3.911 17 H 0.156 0.844 18 C -0.108 4.108 19 C -0.109 4.109 20 C -0.153 4.153 21 C -0.128 4.128 22 C -0.143 4.143 23 C -0.124 4.124 24 N -0.150 5.150 25 C -0.096 4.096 26 C -0.300 4.300 27 C -0.136 4.136 28 N -0.135 5.135 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.236 0.764 36 H 0.120 0.880 37 H 0.155 0.845 38 H 0.169 0.831 39 H 0.171 0.829 40 H 0.158 0.842 41 H 0.178 0.822 42 H 0.184 0.816 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -16.865 6.955 -10.127 20.865 hybrid contribution 1.166 0.089 1.328 1.769 sum -15.699 7.043 -8.800 19.326 Atomic orbital electron populations 1.21762 0.94936 1.00776 1.01620 1.22226 0.96022 0.98319 1.01165 1.18847 0.93320 0.89713 0.83182 0.95298 1.21206 0.90221 1.38850 1.06921 0.93103 1.25531 0.95702 0.95744 0.99781 1.69977 1.10356 1.45927 1.30823 0.86038 0.79378 0.79949 0.78288 1.18628 1.22093 1.18149 1.46055 1.14956 1.55276 1.17322 1.20361 0.82323 0.79666 0.88848 1.90729 1.51406 1.60040 1.39677 1.20116 0.86412 0.87354 0.97216 0.84359 1.19465 0.92938 0.99738 0.98699 1.20944 0.97649 0.96037 0.96289 1.21372 0.92595 1.00877 1.00422 1.21569 1.00057 0.96611 0.94556 1.21454 0.96435 0.97299 0.99158 1.21260 0.93067 0.99806 0.98247 1.48488 1.35766 1.26265 1.04497 1.22673 0.96862 0.93547 0.96543 1.21791 1.08346 1.06192 0.93680 1.24469 0.96462 0.94815 0.97871 1.77312 1.18005 1.17458 1.00771 0.92174 0.92814 0.94146 0.93597 0.91436 0.92031 0.76447 0.88042 0.84477 0.83079 0.82855 0.84166 0.82228 0.81576 0.76610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 8.51 71.98 0.61 -4.30 16 2 C -0.14 -5.80 5.11 30.60 0.16 -5.64 16 3 C 0.25 11.55 1.83 44.25 0.08 11.63 16 4 H 0.03 1.46 6.64 -2.39 -0.02 1.44 16 5 C -0.53 -28.67 9.31 25.60 0.24 -28.43 16 6 H 0.05 2.97 7.98 -2.91 -0.02 2.95 16 7 C 0.03 1.81 5.45 84.66 0.46 2.27 16 8 N -0.93 -55.48 13.96 21.45 0.30 -55.18 16 9 Si 0.94 43.87 24.41 68.60 1.67 45.54 16 10 H -0.26 -11.52 6.83 99.48 0.68 -10.84 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.26 -11.80 6.53 99.48 0.65 -11.15 16 13 N -0.69 -26.34 5.02 -446.08 -2.24 -28.58 16 14 C 0.51 17.70 4.79 87.66 0.42 18.12 16 15 O -0.54 -21.56 12.22 -3.01 -0.04 -21.60 16 16 C 0.19 5.67 3.35 43.50 0.15 5.81 16 17 H 0.14 3.56 7.88 -2.39 -0.02 3.54 16 18 C -0.11 -2.96 4.60 -19.87 -0.09 -3.05 16 19 C -0.09 -2.57 8.04 22.27 0.18 -2.39 16 20 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 21 C -0.11 -2.09 10.05 22.27 0.22 -1.87 16 22 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 23 C -0.11 -2.39 9.67 22.27 0.22 -2.18 16 24 N -0.37 -10.91 3.45 -334.65 -1.15 -12.06 16 25 C 0.05 1.47 9.56 83.54 0.80 2.27 16 26 C -0.27 -7.03 10.80 21.99 0.24 -6.80 16 27 C 0.05 1.22 12.03 85.24 1.03 2.25 16 28 N -0.31 -9.16 12.58 -57.02 -0.72 -9.87 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.92 5.64 -2.39 -0.01 1.91 16 31 H 0.04 1.58 7.85 -2.38 -0.02 1.56 16 32 H 0.05 2.01 3.21 -2.39 -0.01 2.01 16 33 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.40 14.80 8.54 -92.71 -0.79 14.01 16 36 H 0.10 3.12 6.96 -2.91 -0.02 3.09 16 37 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 39 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.14 2.57 7.94 -2.91 -0.02 2.55 16 41 H 0.16 4.96 7.65 -2.91 -0.02 4.94 16 42 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 43 H 0.22 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -67.01 350.48 3.13 -63.88 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: 0.15 Total: 35.23 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 5.15 Total: -17.36 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -3.81 Total: -105.70 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.04 Total: -21.60 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.67 Total: 45.54 kcal Total: -67.01 3.13 -63.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273831811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.555 kcal (2) G-P(sol) polarization free energy of solvation -67.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds