Wall clock time and date at job start Fri Apr 10 2020 22:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21580 * 119.99487 * 359.97438 * 14 13 3 16 16 C 1.47665 * 120.00106 * 180.02562 * 14 13 3 17 17 C 1.39706 * 120.07609 * 359.72523 * 16 14 13 18 18 C 1.37718 * 119.91581 * 179.76805 * 17 16 14 19 19 C 1.39057 * 120.08268 * 0.47799 * 18 17 16 20 20 N 1.39836 * 119.92188 * 179.74210 * 19 18 17 21 21 N 1.40095 * 126.09465 * 145.04888 * 20 19 18 22 22 C 1.30832 * 108.25092 * 180.02562 * 21 20 19 23 23 C 1.39953 * 108.36504 * 0.02562 * 22 21 20 24 24 C 1.35293 * 107.97101 * 359.73620 * 23 22 21 25 25 C 1.50699 * 126.19509 * 180.28018 * 24 23 22 26 26 C 1.39054 * 120.15252 * 359.77250 * 19 18 17 27 27 C 1.37718 * 120.08082 * 359.97438 * 26 19 18 28 28 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 30 30 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 31 31 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 32 32 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 33 33 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 34 34 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 35 35 H 1.07998 * 120.04224 * 359.97438 * 17 16 14 36 36 H 1.08008 * 119.95685 * 180.22873 * 18 17 16 37 37 H 1.07995 * 125.81620 * 180.02562 * 22 21 20 38 38 H 1.08008 * 126.01652 * 180.02562 * 23 22 21 39 39 H 1.08990 * 109.47148 * 270.16897 * 25 24 23 40 40 H 1.09004 * 109.47159 * 30.17141 * 25 24 23 41 41 H 1.08996 * 109.47216 * 150.16458 * 25 24 23 42 42 H 1.08001 * 119.96053 * 179.97438 * 26 19 18 43 43 H 1.08002 * 120.04156 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3415 2.6319 -0.4321 16 6 0.0442 3.3241 -2.6289 17 6 0.9371 3.3666 -3.7026 18 6 0.5673 3.9785 -4.8796 19 6 -0.6893 4.5624 -4.9969 20 7 -1.0592 5.1875 -6.1917 21 7 -2.3440 5.2062 -6.7501 22 6 -2.2957 5.8866 -7.8666 23 6 -0.9805 6.3245 -8.0595 24 6 -0.2380 5.8886 -7.0159 25 6 1.2341 6.1341 -6.8070 26 6 -1.5785 4.5266 -3.9284 27 6 -1.2175 3.9118 -2.7501 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 3.8292 -0.0558 2.9526 34 1 2.2719 2.1232 -1.9978 35 1 1.9148 2.9171 -3.6108 36 1 1.2557 4.0084 -5.7114 37 1 -3.1287 6.0777 -8.5267 38 1 -0.6223 6.9115 -8.8924 39 1 1.8059 5.3322 -7.2737 40 1 1.5110 7.0874 -7.2571 41 1 1.4501 6.1604 -5.7389 42 1 -2.5536 4.9814 -4.0227 43 1 -1.9085 3.8848 -1.9206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273861348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:27 Heat of formation + Delta-G solvation = 64.379514 kcal Electronic energy + Delta-G solvation = -25088.014137 eV Core-core repulsion = 21520.801831 eV Total energy + Delta-G solvation = -3567.212307 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79177 -39.82411 -38.17214 -35.13776 -33.79742 -32.82750 -32.34827 -31.22006 -30.79274 -29.19016 -27.36454 -26.95719 -24.23641 -23.23807 -22.75436 -21.24701 -20.69717 -20.08271 -19.38552 -18.04181 -17.54236 -16.09248 -15.96163 -15.47806 -15.06681 -14.98598 -14.61617 -14.52555 -14.32572 -14.00211 -13.62571 -13.49702 -13.26905 -13.12860 -12.78468 -12.73805 -12.59665 -12.18505 -11.97929 -11.55027 -11.32597 -11.28454 -11.00705 -10.90893 -10.87910 -10.35753 -10.24110 -10.16915 -9.66038 -9.22459 -9.19007 -9.13152 -9.08867 -8.53628 -8.36373 -7.87737 -6.16137 -4.25845 0.48613 1.17185 1.70966 2.14601 2.51009 3.12795 3.21818 3.28789 3.30040 3.95654 4.03278 4.27460 4.32904 4.37886 4.63985 4.66112 4.79112 5.07022 5.11558 5.15049 5.15489 5.28706 5.31295 5.39171 5.43418 5.56627 5.78659 5.80491 6.02321 6.06527 6.29535 6.37420 6.37461 6.43886 6.50980 6.63642 6.96132 7.01923 7.16962 7.31820 7.38281 7.39382 7.57797 7.68492 7.85515 8.13660 8.58058 8.72266 9.03194 9.41336 10.89286 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022041 B = 0.002856 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.078970 B = 9801.062921 C =10782.847807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.541 3.459 15 O -0.541 6.541 16 C -0.119 4.119 17 C -0.068 4.068 18 C -0.139 4.139 19 C 0.161 3.839 20 N -0.324 5.324 21 N -0.288 5.288 22 C 0.052 3.948 23 C -0.269 4.269 24 C 0.087 3.913 25 C -0.100 4.100 26 C -0.119 4.119 27 C -0.046 4.046 28 H 0.023 0.977 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.031 0.969 32 H 0.100 0.900 33 H 0.265 0.735 34 H 0.387 0.613 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.188 0.812 38 H 0.152 0.848 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.136 0.864 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.173 10.146 -19.018 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.421 6.421 16 C -0.123 4.123 17 C -0.088 4.088 18 C -0.159 4.159 19 C 0.069 3.931 20 N -0.101 5.101 21 N -0.106 5.106 22 C -0.135 4.135 23 C -0.297 4.297 24 C -0.036 4.036 25 C -0.158 4.158 26 C -0.138 4.138 27 C -0.065 4.065 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.204 0.796 38 H 0.169 0.831 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.154 0.846 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.401 9.300 -17.265 20.629 hybrid contribution 1.701 0.426 -0.980 2.009 sum -4.700 9.726 -18.245 21.203 Atomic orbital electron populations 1.21850 0.98305 0.98148 1.01256 1.21937 0.92664 0.99685 1.02345 1.18844 0.94317 0.89243 0.80764 0.93073 1.21206 0.90585 1.39330 1.06281 0.92081 1.24886 0.98631 0.94737 0.95380 1.69895 1.35170 1.37577 1.09185 0.86454 0.84802 0.77679 0.78201 1.20556 1.21054 1.19843 1.46476 1.14260 1.55322 1.18656 1.18043 0.83143 0.79539 0.86691 1.90760 1.51460 1.60035 1.39837 1.20497 0.95307 1.01077 0.95434 1.21242 0.99492 0.96588 0.91454 1.20946 0.95573 1.00019 0.99383 1.17579 0.95007 0.97022 0.83448 1.45934 1.06679 1.40445 1.17083 1.77519 0.98201 1.23264 1.11648 1.24000 0.98052 0.96385 0.95022 1.21298 0.93635 1.12407 1.02381 1.21416 0.94870 0.95640 0.91717 1.20658 0.87694 1.03583 1.03845 1.20924 1.00070 1.01451 0.91397 1.21218 0.95354 0.93083 0.96893 0.95777 0.93082 0.94296 0.94979 0.88221 0.92503 0.77932 0.84247 0.84713 0.79556 0.83056 0.89728 0.89385 0.90267 0.84597 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.60 2.24 -69.08 -0.15 6.45 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.72 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.24 11.31 55.43 0.63 -23.61 16 9 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.70 -14.00 4.97 -55.93 -0.28 -14.27 16 14 C 0.54 10.53 6.34 -12.41 -0.08 10.45 16 15 O -0.54 -12.33 13.47 5.30 0.07 -12.26 16 16 C -0.12 -1.83 5.88 -104.95 -0.62 -2.45 16 17 C -0.07 -0.85 9.53 -39.22 -0.37 -1.22 16 18 C -0.14 -1.55 8.27 -39.47 -0.33 -1.88 16 19 C 0.16 2.04 6.29 -83.60 -0.53 1.51 16 20 N -0.32 -4.01 3.74 -6.84 -0.03 -4.03 16 21 N -0.29 -3.70 12.33 30.64 0.38 -3.32 16 22 C 0.05 0.51 12.02 -17.34 -0.21 0.30 16 23 C -0.27 -2.39 10.72 -39.99 -0.43 -2.82 16 24 C 0.09 0.87 6.77 -81.87 -0.55 0.31 16 25 C -0.10 -0.67 8.60 36.00 0.31 -0.36 16 26 C -0.12 -1.55 9.74 -39.47 -0.38 -1.93 16 27 C -0.05 -0.66 9.58 -39.22 -0.38 -1.03 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 30 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 2.63 5.96 -51.93 -0.31 2.32 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.39 6.61 6.56 -40.82 -0.27 6.34 16 35 H 0.14 1.49 6.39 -52.49 -0.34 1.15 16 36 H 0.14 1.18 6.11 -52.48 -0.32 0.86 16 37 H 0.19 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.15 0.93 8.06 -52.48 -0.42 0.50 16 39 H 0.08 0.45 7.74 -51.93 -0.40 0.05 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.57 6.92 -51.93 -0.36 0.21 16 42 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.15 2.07 7.64 -52.49 -0.40 1.67 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -31.47 353.65 -8.43 -39.89 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.57 Total: 8.11 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -3.94 Total: -10.96 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.70 Total: -45.24 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.47 -8.43 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273861348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.274 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds