Wall clock time and date at job start Fri Apr 10 2020 22:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21580 * 119.99487 * 359.97438 * 14 13 3 16 16 C 1.47665 * 120.00106 * 180.02562 * 14 13 3 17 17 C 1.39706 * 120.07609 * 359.72523 * 16 14 13 18 18 C 1.37718 * 119.91581 * 179.76805 * 17 16 14 19 19 C 1.39057 * 120.08268 * 0.47799 * 18 17 16 20 20 N 1.39836 * 119.92188 * 179.74210 * 19 18 17 21 21 N 1.40095 * 126.09465 * 145.04888 * 20 19 18 22 22 C 1.30832 * 108.25092 * 180.02562 * 21 20 19 23 23 C 1.39953 * 108.36504 * 0.02562 * 22 21 20 24 24 C 1.35293 * 107.97101 * 359.73620 * 23 22 21 25 25 C 1.50699 * 126.19509 * 180.28018 * 24 23 22 26 26 C 1.39054 * 120.15252 * 359.77250 * 19 18 17 27 27 C 1.37718 * 120.08082 * 359.97438 * 26 19 18 28 28 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 30 30 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 31 31 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 32 32 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 33 33 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 34 34 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 35 35 H 1.07998 * 120.04224 * 359.97438 * 17 16 14 36 36 H 1.08008 * 119.95685 * 180.22873 * 18 17 16 37 37 H 1.07995 * 125.81620 * 180.02562 * 22 21 20 38 38 H 1.08008 * 126.01652 * 180.02562 * 23 22 21 39 39 H 1.08990 * 109.47148 * 270.16897 * 25 24 23 40 40 H 1.09004 * 109.47159 * 30.17141 * 25 24 23 41 41 H 1.08996 * 109.47216 * 150.16458 * 25 24 23 42 42 H 1.08001 * 119.96053 * 179.97438 * 26 19 18 43 43 H 1.08002 * 120.04156 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3415 2.6319 -0.4321 16 6 0.0442 3.3241 -2.6289 17 6 0.9371 3.3666 -3.7026 18 6 0.5673 3.9785 -4.8796 19 6 -0.6893 4.5624 -4.9969 20 7 -1.0592 5.1875 -6.1917 21 7 -2.3440 5.2062 -6.7501 22 6 -2.2957 5.8866 -7.8666 23 6 -0.9805 6.3245 -8.0595 24 6 -0.2380 5.8886 -7.0159 25 6 1.2341 6.1341 -6.8070 26 6 -1.5785 4.5266 -3.9284 27 6 -1.2175 3.9118 -2.7501 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 3.8292 -0.0558 2.9526 34 1 2.2719 2.1232 -1.9978 35 1 1.9148 2.9171 -3.6108 36 1 1.2557 4.0084 -5.7114 37 1 -3.1287 6.0777 -8.5267 38 1 -0.6223 6.9115 -8.8924 39 1 1.8059 5.3322 -7.2737 40 1 1.5110 7.0874 -7.2571 41 1 1.4501 6.1604 -5.7389 42 1 -2.5536 4.9814 -4.0227 43 1 -1.9085 3.8848 -1.9206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273861348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:26 Heat of formation + Delta-G solvation = 45.893276 kcal Electronic energy + Delta-G solvation = -25088.815761 eV Core-core repulsion = 21520.801831 eV Total energy + Delta-G solvation = -3568.013930 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.57603 -41.16614 -39.45722 -36.94902 -34.81635 -34.29985 -33.45064 -32.76250 -31.95062 -30.32027 -28.79106 -27.98088 -25.54822 -24.71686 -23.96109 -22.41069 -21.85697 -21.23927 -20.88319 -19.49748 -18.47978 -17.76753 -17.38291 -16.72817 -16.36249 -16.19776 -15.93413 -15.72027 -15.49142 -15.02403 -14.70630 -14.58761 -14.47605 -14.11183 -14.02784 -13.75775 -13.55913 -13.53835 -13.34390 -13.16403 -12.88472 -12.87109 -12.68228 -12.28907 -12.16017 -12.06007 -11.68163 -11.59020 -11.12213 -11.05148 -10.81927 -10.51862 -10.21827 -9.93158 -9.68222 -9.22995 -8.14971 -6.32250 -0.54712 0.17926 0.87574 1.34223 1.46907 1.47059 1.57605 1.83362 1.90206 2.34083 2.57579 2.75493 3.15144 3.51127 3.63280 3.75001 3.81526 3.91166 4.09397 4.16480 4.34121 4.45025 4.49573 4.56873 4.65032 4.69415 4.74526 4.79145 4.82484 4.97120 5.04998 5.07300 5.10470 5.19064 5.22025 5.30047 5.43348 5.46984 5.55343 5.61356 5.71213 5.79552 5.92414 6.14203 6.16563 6.63259 6.75100 6.93867 7.33413 7.52185 8.90640 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022041 B = 0.002856 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.078970 B = 9801.062921 C =10782.847807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.696 5.696 14 C 0.541 3.459 15 O -0.583 6.583 16 C -0.142 4.142 17 C -0.055 4.055 18 C -0.128 4.128 19 C 0.167 3.833 20 N -0.344 5.344 21 N -0.336 5.336 22 C 0.056 3.944 23 C -0.269 4.269 24 C 0.077 3.923 25 C -0.101 4.101 26 C -0.125 4.125 27 C -0.048 4.048 28 H 0.045 0.955 29 H 0.026 0.974 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.265 0.735 34 H 0.404 0.596 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.218 0.782 38 H 0.182 0.818 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.137 0.863 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.433 11.122 -22.589 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.181 1.181 13 N -0.344 5.344 14 C 0.329 3.671 15 O -0.466 6.466 16 C -0.146 4.146 17 C -0.074 4.074 18 C -0.148 4.148 19 C 0.075 3.925 20 N -0.122 5.122 21 N -0.154 5.154 22 C -0.131 4.131 23 C -0.296 4.296 24 C -0.045 4.045 25 C -0.159 4.159 26 C -0.145 4.145 27 C -0.068 4.068 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.234 0.766 38 H 0.199 0.801 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.092 0.908 42 H 0.155 0.845 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.653 10.299 -20.895 23.756 hybrid contribution 1.060 0.246 -0.022 1.088 sum -3.594 10.546 -20.918 23.700 Atomic orbital electron populations 1.21692 0.97172 0.99141 1.00205 1.21792 0.93587 0.99175 1.01443 1.18422 0.93865 0.89144 0.81120 0.98206 1.21568 0.91189 1.39041 1.06696 0.90676 1.25775 1.03297 0.94370 0.95052 1.70055 1.37101 1.38478 1.09753 0.85375 0.79131 0.77300 0.78716 1.20541 1.21200 1.18142 1.46178 1.15069 1.55406 1.17786 1.18607 0.82220 0.78669 0.87646 1.90734 1.52536 1.61515 1.41796 1.20123 0.96667 1.03280 0.94522 1.21407 0.99527 0.95781 0.90676 1.21184 0.95430 0.98578 0.99603 1.17787 0.95205 0.96006 0.83550 1.46039 1.07175 1.41625 1.17336 1.77493 0.99063 1.25456 1.13383 1.24659 0.99552 0.94662 0.94223 1.21742 0.93073 1.11988 1.02840 1.22104 0.96232 0.94813 0.91349 1.20814 0.85702 1.05437 1.03900 1.20893 1.00571 1.01745 0.91279 1.21124 0.95030 0.93439 0.97197 0.93601 0.95486 0.93967 0.93848 0.90900 0.92631 0.75998 0.82197 0.81588 0.76597 0.80118 0.87896 0.87302 0.90810 0.84485 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.06 16 2 C -0.12 -5.92 5.45 30.60 0.17 -5.75 16 3 C 0.28 14.00 2.24 44.24 0.10 14.10 16 4 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 5 C -0.55 -28.09 8.73 25.60 0.22 -27.87 16 6 H 0.08 3.55 7.74 -2.92 -0.02 3.53 16 7 C 0.02 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -51.78 11.31 21.45 0.24 -51.54 16 9 Si 0.97 41.06 29.54 68.60 2.03 43.09 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 13 N -0.70 -28.04 4.97 -449.14 -2.23 -30.27 16 14 C 0.54 21.62 6.34 86.73 0.55 22.17 16 15 O -0.58 -28.04 13.47 -3.97 -0.05 -28.09 16 16 C -0.14 -4.36 5.88 -20.08 -0.12 -4.48 16 17 C -0.05 -1.25 9.53 22.50 0.21 -1.03 16 18 C -0.13 -2.52 8.27 22.34 0.18 -2.33 16 19 C 0.17 3.97 6.29 38.26 0.24 4.21 16 20 N -0.34 -7.86 3.74 -175.56 -0.66 -8.51 16 21 N -0.34 -8.17 12.33 -56.97 -0.70 -8.87 16 22 C 0.06 0.94 12.02 85.26 1.02 1.97 16 23 C -0.27 -3.87 10.72 22.01 0.24 -3.63 16 24 C 0.08 1.31 6.77 41.26 0.28 1.58 16 25 C -0.10 -0.96 8.60 71.24 0.61 -0.34 16 26 C -0.12 -3.26 9.74 22.34 0.22 -3.04 16 27 C -0.05 -1.41 9.58 22.50 0.22 -1.20 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 29 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 30 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 3.99 5.96 -2.39 -0.01 3.97 16 33 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.40 13.31 6.56 -92.71 -0.61 12.71 16 35 H 0.16 2.93 6.39 -2.91 -0.02 2.91 16 36 H 0.17 2.21 6.11 -2.91 -0.02 2.20 16 37 H 0.22 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 39 H 0.10 0.63 7.74 -2.39 -0.02 0.61 16 40 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 0.81 6.92 -2.39 -0.02 0.79 16 42 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 43 H 0.13 4.13 7.64 -2.91 -0.02 4.10 16 Total: -1.00 -71.31 353.65 4.26 -67.05 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.43 Total: 26.63 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 5.21 Total: -9.46 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -3.35 Total: -99.20 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -71.31 4.26 -67.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273861348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.940 kcal (2) G-P(sol) polarization free energy of solvation -71.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds