Wall clock time and date at job start Fri Apr 10 2020 22:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47130 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47127 * 119.99459 * 9 7 5 12 12 H 1.48498 * 109.47285 * 239.99667 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21573 * 120.00176 * 0.02562 * 14 13 3 16 16 C 1.47666 * 119.99744 * 180.02562 * 14 13 3 17 17 C 1.39704 * 120.07979 * 359.72718 * 16 14 13 18 18 C 1.37729 * 119.91947 * 179.72380 * 17 16 14 19 19 C 1.39048 * 120.08176 * 0.52662 * 18 17 16 20 20 N 1.39825 * 119.92552 * 179.74478 * 19 18 17 21 21 N 1.40098 * 126.10330 * 145.04812 * 20 19 18 22 22 C 1.30831 * 108.25237 * 180.02562 * 21 20 19 23 23 C 1.39949 * 108.36545 * 0.02562 * 22 21 20 24 24 C 1.35283 * 107.97270 * 359.73148 * 23 22 21 25 25 C 1.50694 * 126.19319 * 180.28430 * 24 23 22 26 26 C 1.39061 * 120.15254 * 359.77542 * 19 18 17 27 27 C 1.37720 * 120.08051 * 359.94400 * 26 19 18 28 28 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 29 29 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 30 30 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 32 32 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 33 33 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 34 34 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 35 35 H 1.07997 * 120.03923 * 359.97438 * 17 16 14 36 36 H 1.08001 * 119.95565 * 180.28118 * 18 17 16 37 37 H 1.07997 * 125.81278 * 180.02562 * 22 21 20 38 38 H 1.08005 * 126.01063 * 180.02562 * 23 22 21 39 39 H 1.09009 * 109.47290 * 270.16438 * 25 24 23 40 40 H 1.09000 * 109.47756 * 30.16981 * 25 24 23 41 41 H 1.09005 * 109.47223 * 150.17166 * 25 24 23 42 42 H 1.08006 * 119.95882 * 179.97438 * 26 19 18 43 43 H 1.08001 * 120.04241 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5191 -1.4628 12 1 6.4000 1.6157 -2.6092 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3374 2.6411 0.4286 16 6 0.0469 3.3298 2.6268 17 6 0.9337 3.3580 3.7059 18 6 0.5684 3.9800 4.8792 19 6 -0.6856 4.5699 4.9942 20 7 -1.0551 5.1958 6.1886 21 7 -1.8540 6.3404 6.3080 22 6 -1.9769 6.6236 7.5793 23 6 -1.2615 5.6716 8.3143 24 6 -0.7072 4.8000 7.4406 25 6 0.1445 3.6076 7.7925 26 6 -1.5732 4.5382 3.9242 27 6 -1.2124 3.9230 2.7460 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8293 -0.0617 -2.9496 34 1 2.2720 2.1230 1.9979 35 1 1.9061 2.8962 3.6189 36 1 1.2552 4.0062 5.7122 37 1 -2.5354 7.4511 7.9913 38 1 -1.1719 5.6359 9.3901 39 1 1.1919 3.9074 7.8294 40 1 -0.1570 3.2201 8.7657 41 1 0.0148 2.8328 7.0369 42 1 -2.5465 4.9970 4.0170 43 1 -1.9024 3.8983 1.9155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273861350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:30 Heat of formation + Delta-G solvation = 64.288576 kcal Electronic energy + Delta-G solvation = -25091.338084 eV Core-core repulsion = 21524.121833 eV Total energy + Delta-G solvation = -3567.216250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79266 -39.82357 -38.17151 -35.14168 -33.79845 -32.82873 -32.34918 -31.22180 -30.79363 -29.19227 -27.36674 -26.95935 -24.23720 -23.23972 -22.75805 -21.24743 -20.69720 -20.08323 -19.38813 -18.04204 -17.54358 -16.10438 -15.96010 -15.44999 -15.06701 -15.02657 -14.62504 -14.49251 -14.30990 -14.02689 -13.63947 -13.47244 -13.23032 -13.18866 -12.80160 -12.74438 -12.55105 -12.21144 -11.98765 -11.56402 -11.32250 -11.28818 -10.99897 -10.91749 -10.87218 -10.34679 -10.23429 -10.17816 -9.67078 -9.22425 -9.19331 -9.13194 -9.07832 -8.54351 -8.36355 -7.87843 -6.16211 -4.25896 0.48589 1.17156 1.70905 2.14595 2.50998 3.12775 3.21048 3.29233 3.31326 3.95708 4.03253 4.27262 4.33137 4.37652 4.63883 4.66158 4.78847 5.06899 5.11149 5.15001 5.15436 5.28524 5.31199 5.38912 5.43368 5.56268 5.78572 5.80388 6.02296 6.06503 6.29517 6.36474 6.37414 6.42880 6.50957 6.62856 6.96105 7.01028 7.16447 7.31518 7.37928 7.39368 7.57806 7.68369 7.85607 8.13682 8.57995 8.72469 9.03211 9.41454 10.89167 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022311 B = 0.002804 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.675520 B = 9982.781891 C =10630.166491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.699 5.699 14 C 0.541 3.459 15 O -0.541 6.541 16 C -0.119 4.119 17 C -0.068 4.068 18 C -0.139 4.139 19 C 0.161 3.839 20 N -0.324 5.324 21 N -0.288 5.288 22 C 0.052 3.948 23 C -0.269 4.269 24 C 0.087 3.913 25 C -0.100 4.100 26 C -0.119 4.119 27 C -0.046 4.046 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.264 0.736 34 H 0.387 0.613 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.188 0.812 38 H 0.152 0.848 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.136 0.864 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.678 6.678 20.382 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.421 6.421 16 C -0.123 4.123 17 C -0.088 4.088 18 C -0.159 4.159 19 C 0.069 3.931 20 N -0.101 5.101 21 N -0.106 5.106 22 C -0.135 4.135 23 C -0.297 4.297 24 C -0.037 4.037 25 C -0.158 4.158 26 C -0.138 4.138 27 C -0.065 4.065 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.118 0.882 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.221 0.779 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.204 0.796 38 H 0.169 0.831 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.154 0.846 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.474 6.840 18.241 20.865 hybrid contribution 1.466 -0.115 1.180 1.886 sum -6.007 6.725 19.421 21.413 Atomic orbital electron populations 1.21844 0.98331 0.98135 1.01233 1.21937 0.92636 0.99665 1.02372 1.18851 0.94339 0.89253 0.80779 0.93079 1.21246 0.90604 1.39101 1.06369 0.92028 1.24884 0.98638 0.94764 0.95361 1.69902 1.35072 1.37525 1.09345 0.86404 0.84815 0.77785 0.78158 1.19736 1.20853 1.20867 1.46477 1.14383 1.55177 1.18677 1.18041 0.83154 0.79494 0.86716 1.90757 1.51518 1.60114 1.39712 1.20498 0.95438 1.01066 0.95314 1.21244 0.99435 0.96772 0.91326 1.20945 0.94182 1.01439 0.99353 1.17576 0.94043 0.96823 0.84612 1.45934 1.39353 1.21276 1.03579 1.77522 1.13151 1.00095 1.19844 1.24001 0.99164 0.99848 0.90450 1.21294 1.08664 0.99302 1.00449 1.21411 0.99516 0.98365 0.84370 1.20659 0.98383 0.93316 1.03412 1.20928 0.99687 1.00957 0.92274 1.21220 0.95393 0.93095 0.96841 0.94338 0.93082 0.95770 0.88184 0.94978 0.92561 0.77927 0.84249 0.84714 0.79554 0.83056 0.89725 0.89390 0.90287 0.84596 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.52 37.16 0.32 -2.71 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.59 2.24 -69.08 -0.15 6.43 16 4 H 0.05 1.46 7.57 -51.93 -0.39 1.06 16 5 C -0.53 -13.73 8.73 -34.44 -0.30 -14.03 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.24 11.29 55.43 0.63 -23.61 16 9 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.70 -13.99 4.97 -55.93 -0.28 -14.27 16 14 C 0.54 10.53 6.33 -12.41 -0.08 10.46 16 15 O -0.54 -12.34 13.51 5.30 0.07 -12.27 16 16 C -0.12 -1.83 5.88 -104.95 -0.62 -2.45 16 17 C -0.07 -0.85 9.53 -39.22 -0.37 -1.22 16 18 C -0.14 -1.55 8.27 -39.47 -0.33 -1.88 16 19 C 0.16 2.04 6.29 -83.61 -0.53 1.51 16 20 N -0.32 -4.01 3.74 -6.85 -0.03 -4.03 16 21 N -0.29 -3.70 12.33 30.64 0.38 -3.33 16 22 C 0.05 0.51 12.02 -17.34 -0.21 0.30 16 23 C -0.27 -2.38 10.72 -39.99 -0.43 -2.81 16 24 C 0.09 0.86 6.77 -81.87 -0.55 0.31 16 25 C -0.10 -0.66 8.60 36.00 0.31 -0.35 16 26 C -0.12 -1.55 9.74 -39.47 -0.38 -1.93 16 27 C -0.05 -0.66 9.58 -39.22 -0.38 -1.03 16 28 H 0.04 0.82 5.67 -51.93 -0.29 0.52 16 29 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 2.63 5.95 -51.93 -0.31 2.33 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.39 6.61 6.56 -40.82 -0.27 6.34 16 35 H 0.14 1.49 6.39 -52.49 -0.34 1.15 16 36 H 0.14 1.18 6.11 -52.49 -0.32 0.86 16 37 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.08 0.45 7.75 -51.92 -0.40 0.05 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.56 6.92 -51.93 -0.36 0.20 16 42 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.15 2.07 7.64 -52.49 -0.40 1.67 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -31.53 353.70 -8.43 -39.95 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.57 Total: 7.97 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -3.94 Total: -10.92 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.70 Total: -45.25 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.07 Total: -12.27 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.53 -8.43 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273861350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.242 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds