Wall clock time and date at job start Fri Apr 10 2020 22:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46898 * 2 1 4 4 H 1.08997 * 109.47261 * 55.00313 * 3 2 1 5 5 C 1.50708 * 109.47104 * 175.00041 * 3 2 1 6 6 H 1.07998 * 120.00346 * 119.99546 * 5 3 2 7 7 C 1.37880 * 119.99567 * 299.99813 * 5 3 2 8 8 N 1.31511 * 120.00279 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99774 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46719 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47134 * 119.99990 * 9 7 5 12 12 H 1.48501 * 109.47202 * 240.00180 * 9 7 5 13 13 N 1.46499 * 109.47287 * 294.99533 * 3 2 1 14 14 C 1.34776 * 119.99497 * 84.99995 * 13 3 2 15 15 O 1.21558 * 120.00375 * 0.02562 * 14 13 3 16 16 C 1.47846 * 120.00039 * 179.97438 * 14 13 3 17 17 C 1.39596 * 120.14330 * 0.26054 * 16 14 13 18 18 C 1.37935 * 119.85571 * 180.25011 * 17 16 14 19 19 C 1.38387 * 120.14051 * 359.46695 * 18 17 16 20 20 C 1.38336 * 120.29563 * 0.30360 * 19 18 17 21 21 C 1.50691 * 119.92795 * 179.97438 * 20 19 18 22 22 N 1.46494 * 109.47511 * 89.99968 * 21 20 19 23 23 C 1.36885 * 126.39685 * 269.71304 * 22 21 20 24 24 C 1.34668 * 106.81670 * 179.84059 * 23 22 21 25 25 N 1.34123 * 108.02108 * 0.42176 * 24 23 22 26 26 C 1.30499 * 109.25607 * 359.73138 * 25 24 23 27 27 C 1.37978 * 120.14111 * 359.95065 * 20 19 18 28 28 H 1.09001 * 109.47428 * 59.99976 * 1 2 3 29 29 H 1.08997 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47439 * 299.99735 * 1 2 3 31 31 H 1.08993 * 109.47232 * 240.00040 * 2 1 3 32 32 H 1.09005 * 109.46989 * 119.99824 * 2 1 3 33 33 H 0.97005 * 119.99764 * 179.97438 * 8 7 5 34 34 H 0.96996 * 120.00628 * 265.00507 * 13 3 2 35 35 H 1.08004 * 120.07599 * 0.02562 * 17 16 14 36 36 H 1.08002 * 119.93294 * 179.75138 * 18 17 16 37 37 H 1.08006 * 119.84850 * 180.27716 * 19 18 17 38 38 H 1.09002 * 109.47204 * 209.99835 * 21 20 19 39 39 H 1.09001 * 109.47239 * 329.99174 * 21 20 19 40 40 H 1.08005 * 126.58853 * 359.97438 * 23 22 21 41 41 H 1.08008 * 125.98787 * 180.11737 * 24 23 22 42 42 H 1.07999 * 125.64910 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.07062 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8801 1.3812 10 1 6.5987 1.5442 0.1931 11 1 6.3999 1.6158 2.6092 12 1 6.4962 -0.5189 1.4628 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3411 2.6325 -0.4320 16 6 0.0442 3.3258 -2.6301 17 6 0.9315 3.3603 -3.7072 18 6 0.5626 3.9836 -4.8811 19 6 -0.6883 4.5643 -4.9961 20 6 -1.5742 4.5295 -3.9342 21 6 -2.9340 5.1649 -4.0684 22 7 -3.8870 4.1761 -4.5784 23 6 -4.1776 3.9311 -5.8934 24 6 -5.0978 2.9481 -5.9125 25 7 -5.3687 2.6087 -4.6435 26 6 -4.6471 3.3401 -3.8390 27 6 -1.2156 3.9137 -2.7527 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0617 2.9495 34 1 2.2719 2.1231 -1.9978 35 1 1.9062 2.9032 -3.6204 36 1 1.2496 4.0145 -5.7138 37 1 -0.9740 5.0471 -5.9191 38 1 -3.2666 5.5207 -3.0933 39 1 -2.8759 6.0046 -4.7610 40 1 -3.7494 4.4289 -6.7509 41 1 -5.5435 2.5130 -6.7949 42 1 -4.6561 3.2855 -2.7604 43 1 -1.9080 3.8876 -1.9242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273896710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:41 Heat of formation + Delta-G solvation = 48.072322 kcal Electronic energy + Delta-G solvation = -25188.678364 eV Core-core repulsion = 21620.758924 eV Total energy + Delta-G solvation = -3567.919440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.15856 -39.98005 -38.33030 -35.13082 -34.80080 -32.56840 -31.56383 -31.16701 -30.45150 -29.51781 -27.15446 -26.50472 -24.06429 -22.80327 -22.24014 -21.39003 -21.10859 -20.23466 -19.38171 -18.06404 -17.36682 -16.47871 -16.00069 -15.78226 -15.32509 -15.05666 -14.60330 -14.58247 -14.27695 -14.08043 -14.00950 -13.49761 -13.43061 -13.12866 -12.75343 -12.67406 -12.60124 -11.97140 -11.83264 -11.55187 -11.34282 -11.28122 -11.00374 -10.88349 -10.35108 -10.22625 -10.10991 -9.81622 -9.67137 -9.19012 -9.10964 -9.08356 -9.00992 -8.63736 -8.54949 -7.89606 -6.16778 -4.26577 0.80195 1.09781 1.93861 2.64228 3.09513 3.20349 3.23622 3.28499 3.30637 3.90702 4.05120 4.26462 4.30098 4.36915 4.63366 4.72342 4.76415 4.78106 4.98132 5.12623 5.14989 5.22319 5.28404 5.40142 5.54951 5.66485 5.78133 6.06217 6.21245 6.22785 6.28961 6.37463 6.43654 6.60506 6.63422 6.69037 7.01646 7.02831 7.16437 7.31253 7.37645 7.57406 7.67848 7.84880 7.97575 8.13291 8.57338 8.71591 9.02266 9.40740 10.88566 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.023228 B = 0.002935 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.155309 B = 9537.277102 C =10260.852889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.699 5.699 14 C 0.540 3.460 15 O -0.543 6.543 16 C -0.118 4.118 17 C -0.078 4.078 18 C -0.127 4.127 19 C -0.084 4.084 20 C -0.132 4.132 21 C 0.150 3.850 22 N -0.454 5.454 23 C -0.057 4.057 24 C -0.033 4.033 25 N -0.497 5.497 26 C 0.188 3.812 27 C -0.045 4.045 28 H 0.037 0.963 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.100 0.900 33 H 0.264 0.736 34 H 0.387 0.613 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.204 0.796 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 10.145 -16.322 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.347 5.347 14 C 0.325 3.675 15 O -0.423 6.423 16 C -0.121 4.121 17 C -0.097 4.097 18 C -0.145 4.145 19 C -0.103 4.103 20 C -0.133 4.133 21 C 0.028 3.972 22 N -0.136 5.136 23 C -0.190 4.190 24 C -0.180 4.180 25 N -0.215 5.215 26 C -0.094 4.094 27 C -0.064 4.064 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.188 0.812 41 H 0.184 0.816 42 H 0.220 0.780 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.120 9.502 -15.133 20.536 hybrid contribution 2.062 0.532 -0.569 2.204 sum -8.059 10.034 -15.702 20.302 Atomic orbital electron populations 1.21841 0.98288 0.98182 1.01195 1.21940 0.92671 0.99669 1.02370 1.18845 0.94327 0.89247 0.80727 0.93119 1.21248 0.90602 1.39166 1.06366 0.92058 1.24885 0.98652 0.94744 0.95359 1.69902 1.35077 1.37477 1.09345 0.86401 0.84796 0.77817 0.78132 1.19752 1.20848 1.20834 1.46476 1.14258 1.55294 1.18656 1.18121 0.83124 0.79510 0.86743 1.90746 1.51472 1.60168 1.39884 1.20381 0.95302 1.01060 0.95379 1.21520 0.99216 0.96520 0.92429 1.21074 0.96629 0.98908 0.97936 1.21101 0.93591 0.98117 0.97527 1.19795 0.95639 1.02817 0.95017 1.20723 0.85011 0.89397 1.02095 1.45658 1.31385 1.29871 1.06727 1.22675 1.04910 1.04805 0.86628 1.22288 1.01022 0.99301 0.95434 1.70308 1.24660 1.25026 1.01514 1.25074 0.93329 0.91715 0.99293 1.21141 0.95368 0.93184 0.96749 0.94361 0.95743 0.93099 0.95011 0.88161 0.92548 0.77936 0.85083 0.85302 0.85956 0.87702 0.88101 0.81213 0.81606 0.77980 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.84 8.73 -34.44 -0.30 -14.14 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.32 11.29 55.43 0.63 -23.69 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.70 -14.19 4.97 -55.88 -0.28 -14.47 16 14 C 0.54 10.55 6.34 -12.33 -0.08 10.48 16 15 O -0.54 -12.32 13.48 5.32 0.07 -12.25 16 16 C -0.12 -1.78 5.87 -104.97 -0.62 -2.40 16 17 C -0.08 -0.96 9.54 -39.19 -0.37 -1.34 16 18 C -0.13 -1.25 10.03 -39.64 -0.40 -1.65 16 19 C -0.08 -0.76 9.69 -39.49 -0.38 -1.14 16 20 C -0.13 -1.31 5.46 -104.69 -0.57 -1.88 16 21 C 0.15 1.09 6.27 -5.20 -0.03 1.06 16 22 N -0.45 -4.33 2.73 -119.87 -0.33 -4.65 16 23 C -0.06 -0.53 11.58 -16.56 -0.19 -0.72 16 24 C -0.03 -0.36 11.87 -17.82 -0.21 -0.58 16 25 N -0.50 -6.77 11.25 -14.67 -0.17 -6.94 16 26 C 0.19 2.16 12.56 -90.38 -1.14 1.03 16 27 C -0.04 -0.59 9.24 -39.19 -0.36 -0.95 16 28 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 34 H 0.39 6.80 6.57 -40.82 -0.27 6.53 16 35 H 0.13 1.48 6.41 -52.48 -0.34 1.14 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 39 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 40 H 0.17 1.02 8.06 -52.48 -0.42 0.59 16 41 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.14 1.80 7.65 -52.48 -0.40 1.40 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -32.61 359.71 -10.16 -42.77 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.75 Total: 8.63 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -4.73 Total: -10.06 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.14 Total: -49.76 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.07 Total: -12.25 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.61 -10.16 -42.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273896710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.841 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds