Wall clock time and date at job start Fri Apr 10 2020 22:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47058 * 2 1 4 4 H 1.09002 * 109.47053 * 304.99721 * 3 2 1 5 5 C 1.50696 * 109.47052 * 185.00052 * 3 2 1 6 6 H 1.08000 * 120.00271 * 239.99899 * 5 3 2 7 7 C 1.37877 * 120.00075 * 59.99783 * 5 3 2 8 8 N 1.31514 * 119.99968 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99974 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47148 * 90.00145 * 9 7 5 11 11 H 1.48497 * 109.47144 * 210.00112 * 9 7 5 12 12 H 1.48497 * 109.47237 * 330.00111 * 9 7 5 13 13 N 1.46499 * 109.47339 * 65.00076 * 3 2 1 14 14 C 1.34780 * 119.99593 * 275.00309 * 13 3 2 15 15 O 1.21549 * 120.00349 * 359.97438 * 14 13 3 16 16 C 1.47849 * 119.99493 * 180.02562 * 14 13 3 17 17 C 1.39597 * 120.14892 * 359.97438 * 16 14 13 18 18 C 1.37932 * 119.85159 * 179.97438 * 17 16 14 19 19 C 1.38371 * 120.15003 * 0.03014 * 18 17 16 20 20 C 1.38345 * 120.29284 * 359.95070 * 19 18 17 21 21 C 1.50698 * 119.92863 * 179.74959 * 20 19 18 22 22 N 1.46490 * 109.47329 * 89.99710 * 21 20 19 23 23 C 1.36892 * 126.40057 * 269.71235 * 22 21 20 24 24 C 1.34664 * 106.81691 * 179.84608 * 23 22 21 25 25 N 1.34130 * 108.02239 * 0.41990 * 24 23 22 26 26 C 1.30501 * 109.25869 * 359.73401 * 25 24 23 27 27 C 1.37973 * 120.14084 * 0.02562 * 20 19 18 28 28 H 1.08999 * 109.47099 * 300.00056 * 1 2 3 29 29 H 1.08996 * 109.47083 * 60.00320 * 1 2 3 30 30 H 1.09004 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47099 * 239.99944 * 2 1 3 32 32 H 1.08996 * 109.47083 * 119.99680 * 2 1 3 33 33 H 0.97007 * 119.99594 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00019 * 94.99820 * 13 3 2 35 35 H 1.08002 * 120.06534 * 359.96235 * 17 16 14 36 36 H 1.08004 * 119.92216 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.85623 * 179.97438 * 19 18 17 38 38 H 1.08999 * 109.46713 * 209.99971 * 21 20 19 39 39 H 1.09007 * 109.47095 * 329.99403 * 21 20 19 40 40 H 1.08000 * 126.58291 * 359.97438 * 23 22 21 41 41 H 1.08002 * 125.98876 * 180.12071 * 24 23 22 42 42 H 1.07995 * 125.64920 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.07075 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3365 -2.1728 9 14 6.0049 0.8813 -1.3818 10 1 6.5549 -0.3502 -0.7601 11 1 6.3829 0.9224 -2.8173 12 1 6.5569 2.0738 -0.6902 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3411 2.6326 0.4320 16 6 0.0442 3.3259 2.6300 17 6 0.9334 3.3647 3.7055 18 6 0.5625 3.9840 4.8809 19 6 -0.6878 4.5654 4.9957 20 6 -1.5737 4.5308 3.9336 21 6 -2.9355 5.1617 4.0695 22 7 -2.8682 6.5637 3.6504 23 6 -2.5954 7.6391 4.4524 24 6 -2.6302 8.7310 3.6651 25 7 -2.9255 8.3344 2.4183 26 6 -3.0695 7.0375 2.4019 27 6 -1.2151 3.9150 2.7521 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0620 -2.9494 34 1 2.2719 2.1232 1.9977 35 1 1.9093 2.9107 3.6173 36 1 1.2497 4.0151 5.7135 37 1 -0.9734 5.0487 5.9184 38 1 -3.6475 4.6280 3.4399 39 1 -3.2585 5.1083 5.1092 40 1 -2.3897 7.6158 5.5124 41 1 -2.4561 9.7484 3.9830 42 1 -3.3094 6.4418 1.5336 43 1 -1.9077 3.8883 1.9238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273896711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:45 Heat of formation + Delta-G solvation = 48.122380 kcal Electronic energy + Delta-G solvation = -25145.064677 eV Core-core repulsion = 21577.147408 eV Total energy + Delta-G solvation = -3567.917269 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.15148 -39.98099 -38.33199 -35.13383 -34.79847 -32.56636 -31.56591 -31.16720 -30.45946 -29.51322 -27.15656 -26.50281 -24.06326 -22.81017 -22.23917 -21.38595 -21.10519 -20.24028 -19.38469 -18.06210 -17.36692 -16.47563 -15.99689 -15.78139 -15.31880 -15.05081 -14.65920 -14.55049 -14.26056 -14.06044 -14.02819 -13.52977 -13.40388 -13.08753 -12.75747 -12.73688 -12.58204 -11.96526 -11.83381 -11.56694 -11.33931 -11.27733 -11.02990 -10.86026 -10.36128 -10.23211 -10.10412 -9.80910 -9.69014 -9.19388 -9.10965 -9.08868 -9.00932 -8.63198 -8.54718 -7.89797 -6.16319 -4.26148 0.80191 1.09831 1.94316 2.64561 3.10119 3.21488 3.23678 3.29058 3.30946 3.90633 4.05229 4.26588 4.30368 4.37111 4.63943 4.72642 4.76433 4.78136 4.98132 5.12646 5.15387 5.22308 5.28944 5.40248 5.55448 5.66465 5.78134 6.06523 6.21235 6.22874 6.28977 6.34785 6.41219 6.60931 6.61325 6.69003 6.99355 7.03339 7.14936 7.30270 7.37036 7.56917 7.67595 7.84912 7.98152 8.13000 8.57320 8.71744 9.02245 9.41147 10.88999 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.002883 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.497096 B = 9709.695911 C = 9743.629997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.540 3.460 15 O -0.543 6.543 16 C -0.118 4.118 17 C -0.078 4.078 18 C -0.127 4.127 19 C -0.085 4.085 20 C -0.132 4.132 21 C 0.150 3.850 22 N -0.454 5.454 23 C -0.057 4.057 24 C -0.032 4.032 25 N -0.497 5.497 26 C 0.189 3.811 27 C -0.045 4.045 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.387 0.613 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.204 0.796 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.205 7.647 17.280 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.347 5.347 14 C 0.325 3.675 15 O -0.423 6.423 16 C -0.121 4.121 17 C -0.097 4.097 18 C -0.145 4.145 19 C -0.103 4.103 20 C -0.133 4.133 21 C 0.028 3.972 22 N -0.137 5.137 23 C -0.190 4.190 24 C -0.180 4.180 25 N -0.215 5.215 26 C -0.094 4.094 27 C -0.065 4.065 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.118 0.882 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.188 0.812 41 H 0.184 0.816 42 H 0.220 0.780 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.810 7.882 15.745 20.661 hybrid contribution 1.564 -0.648 1.039 1.987 sum -9.245 7.233 16.784 20.482 Atomic orbital electron populations 1.21843 0.98344 0.98100 1.01205 1.21939 0.92631 0.99686 1.02366 1.18838 0.94324 0.89218 0.80751 0.93118 1.21210 0.90607 1.39234 1.06411 0.92109 1.24881 0.98661 0.94743 0.95319 1.69892 1.35165 1.37423 1.09352 0.86452 0.84787 0.78443 0.77459 1.20529 1.21014 1.19844 1.46477 1.14254 1.55298 1.18659 1.18120 0.83149 0.79474 0.86748 1.90743 1.51531 1.60130 1.39855 1.20383 0.95255 1.01120 0.95364 1.21518 0.99125 0.96629 0.92416 1.21069 0.96553 0.98964 0.97956 1.21098 0.93574 0.97771 0.97898 1.19799 0.96363 1.02012 0.95093 1.20725 0.95063 0.78494 1.02933 1.45661 1.51716 1.07058 1.09235 1.22673 1.11133 0.86982 0.98230 1.22288 1.07326 0.98884 0.89530 1.70311 1.19028 1.09896 1.22278 1.25079 1.04656 0.91415 0.88245 1.21141 0.95521 0.93369 0.96420 0.94366 0.93088 0.95785 0.88165 0.95014 0.92496 0.77939 0.85082 0.85304 0.85956 0.87712 0.88108 0.81212 0.81601 0.77967 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.67 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.36 11.29 55.43 0.63 -23.74 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.70 -14.20 4.97 -55.88 -0.28 -14.47 16 14 C 0.54 10.56 6.34 -12.33 -0.08 10.48 16 15 O -0.54 -12.32 13.48 5.32 0.07 -12.25 16 16 C -0.12 -1.78 5.87 -104.96 -0.62 -2.40 16 17 C -0.08 -0.96 9.54 -39.19 -0.37 -1.34 16 18 C -0.13 -1.25 10.03 -39.64 -0.40 -1.65 16 19 C -0.08 -0.76 9.69 -39.49 -0.38 -1.14 16 20 C -0.13 -1.31 5.46 -104.68 -0.57 -1.88 16 21 C 0.15 1.09 6.27 -5.20 -0.03 1.06 16 22 N -0.45 -4.36 2.73 -119.87 -0.33 -4.69 16 23 C -0.06 -0.53 11.58 -16.56 -0.19 -0.73 16 24 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 25 N -0.50 -6.83 11.25 -14.66 -0.16 -7.00 16 26 C 0.19 2.18 12.56 -90.37 -1.14 1.04 16 27 C -0.04 -0.59 9.24 -39.19 -0.36 -0.95 16 28 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 29 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.39 6.79 6.57 -40.82 -0.27 6.53 16 35 H 0.13 1.48 6.41 -52.49 -0.34 1.14 16 36 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 39 H 0.10 0.49 8.08 -51.93 -0.42 0.07 16 40 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.20 1.89 8.06 -52.49 -0.42 1.46 16 43 H 0.14 1.80 7.65 -52.48 -0.40 1.40 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -32.68 359.71 -10.16 -42.84 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.75 Total: 8.53 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -4.73 Total: -9.98 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.14 Total: -49.90 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.07 Total: -12.25 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.68 -10.16 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273896711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.959 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds