Wall clock time and date at job start Fri Apr 10 2020 22:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46984 * 2 1 4 4 N 1.46508 * 109.46893 * 240.00339 * 2 1 3 5 5 C 1.34778 * 119.99742 * 85.00150 * 4 2 1 6 6 O 1.21275 * 119.99891 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99677 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47300 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47300 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00070 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99940 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99999 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99925 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47282 * 60.00033 * 13 11 9 15 15 H 1.48500 * 109.47282 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47353 * 300.00080 * 13 11 9 17 17 C 1.50693 * 109.47206 * 120.00410 * 2 1 3 18 18 N 1.30519 * 125.71664 * 74.99557 * 17 2 1 19 19 C 1.34134 * 109.34809 * 179.97438 * 18 17 2 20 20 C 1.34655 * 108.19610 * 0.02562 * 19 18 17 21 21 N 1.35836 * 125.71779 * 255.00114 * 17 2 1 22 22 C 1.40235 * 126.47079 * 359.97438 * 21 17 2 23 23 C 1.38822 * 120.06386 * 309.72581 * 22 21 17 24 24 C 1.38126 * 119.93290 * 179.72187 * 23 22 21 25 25 C 1.38278 * 120.06473 * 0.53473 * 24 23 22 26 26 C 1.38270 * 120.12843 * 359.76202 * 25 24 23 27 27 C 1.38124 * 120.06506 * 359.95977 * 26 25 24 28 28 H 1.08998 * 109.47447 * 59.99988 * 1 2 3 29 29 H 1.09008 * 109.46960 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47386 * 299.99732 * 1 2 3 31 31 H 0.96995 * 119.99995 * 264.99630 * 4 2 1 32 32 H 1.09000 * 109.47029 * 299.99747 * 7 5 4 33 33 H 1.09000 * 109.47398 * 59.99609 * 7 5 4 34 34 H 1.09000 * 109.46949 * 299.99890 * 8 7 5 35 35 H 1.09000 * 109.47138 * 59.99544 * 8 7 5 36 36 H 0.96995 * 120.00410 * 180.02562 * 12 11 9 37 37 H 1.08001 * 125.89721 * 180.26895 * 19 18 17 38 38 H 1.08001 * 126.58093 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.03343 * 359.97311 * 23 22 21 40 40 H 1.08005 * 119.97050 * 180.29318 * 24 23 22 41 41 H 1.07998 * 119.93515 * 179.74224 * 25 24 23 42 42 H 1.08000 * 119.96521 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.03087 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8582 1.1585 -2.4116 7 6 2.6498 -0.7283 -3.5876 8 6 2.7006 0.2547 -4.7589 9 6 3.2040 -0.4554 -5.9891 10 1 3.4624 -1.5029 -5.9403 11 6 3.3348 0.2323 -7.1770 12 7 3.0207 1.5080 -7.2363 13 14 3.9595 -0.6477 -8.7017 14 1 3.0454 -1.7694 -9.0353 15 1 4.0075 0.3060 -9.8389 16 1 5.3217 -1.1795 -8.4431 17 6 2.0324 -0.7105 1.2303 18 7 2.0277 -2.0018 1.4198 19 6 2.5495 -2.2761 2.6246 20 6 2.8921 -1.1125 3.2093 21 7 2.5658 -0.1142 2.3281 22 6 2.7490 1.2624 2.5228 23 6 3.3807 2.0245 1.5495 24 6 3.5546 3.3812 1.7415 25 6 3.1101 3.9785 2.9068 26 6 2.4862 3.2208 3.8807 27 6 2.3043 1.8647 3.6917 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.2490 -1.6317 -1.1528 32 1 3.6492 -1.1201 -3.3980 33 1 1.9777 -1.5506 -3.8327 34 1 1.7011 0.6461 -4.9483 35 1 3.3725 1.0773 -4.5141 36 1 3.1124 1.9917 -8.0720 37 1 2.6767 -3.2605 3.0504 38 1 3.3388 -0.9893 4.1848 39 1 3.7321 1.5577 0.6412 40 1 4.0417 3.9755 0.9826 41 1 3.2510 5.0387 3.0566 42 1 2.1405 3.6900 4.7900 43 1 1.8165 1.2736 4.4526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291521021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:09 Heat of formation + Delta-G solvation = 45.149677 kcal Electronic energy + Delta-G solvation = -25138.788498 eV Core-core repulsion = 21570.742323 eV Total energy + Delta-G solvation = -3568.046175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.63580 -39.40185 -39.19589 -35.39008 -34.36642 -33.41511 -31.68082 -31.34207 -30.36172 -29.74611 -28.69321 -25.76032 -24.20821 -23.45320 -23.03956 -21.64262 -21.17145 -19.97680 -19.59664 -18.34983 -16.97413 -16.63018 -16.19675 -15.80981 -15.66326 -14.98510 -14.91516 -14.68420 -14.41357 -14.36803 -13.98541 -13.82691 -13.49240 -13.34165 -13.11660 -12.93654 -12.24625 -12.11971 -12.04255 -11.99577 -11.64401 -11.30458 -11.12956 -10.88354 -10.59806 -10.58036 -10.24263 -9.91635 -9.64134 -9.44560 -9.19499 -9.07300 -9.01627 -8.86682 -8.58811 -8.28989 -5.93520 -3.97553 0.58298 0.88844 1.78715 2.33639 2.84902 3.24554 3.25694 3.36879 3.41168 3.43031 3.60962 4.05993 4.40802 4.43629 4.49333 4.51439 4.70046 4.92794 4.95659 4.98625 5.16121 5.20364 5.32695 5.39195 5.41423 5.52325 5.53272 5.67961 5.74963 5.89914 5.92278 6.05561 6.07725 6.20382 6.27896 6.30474 6.34004 6.50589 6.69247 6.93383 6.98469 7.77129 7.79592 7.89353 7.93555 8.09909 8.41807 8.77808 9.10756 9.65756 11.17423 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.002940 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.859177 B = 9520.445387 C =10513.208204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.226 3.774 3 H 0.101 0.899 4 N -0.730 5.730 5 C 0.513 3.487 6 O -0.535 6.535 7 C -0.129 4.129 8 C 0.038 3.962 9 C -0.527 4.527 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.891 5.891 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.213 3.787 18 N -0.473 5.473 19 C -0.022 4.022 20 C -0.050 4.050 21 N -0.408 5.408 22 C 0.112 3.888 23 C -0.111 4.111 24 C -0.096 4.096 25 C -0.112 4.112 26 C -0.105 4.105 27 C -0.115 4.115 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.407 0.593 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.175 0.825 38 H 0.177 0.823 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 -0.058 27.150 27.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.119 3.881 3 H 0.118 0.882 4 N -0.386 5.386 5 C 0.302 3.698 6 O -0.411 6.411 7 C -0.169 4.169 8 C 0.001 3.999 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.529 5.529 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.049 4.049 18 N -0.191 5.191 19 C -0.169 4.169 20 C -0.181 4.181 21 N -0.088 5.088 22 C 0.021 3.979 23 C -0.130 4.130 24 C -0.115 4.115 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.134 4.134 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.242 0.758 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.192 0.808 38 H 0.194 0.806 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.284 0.462 26.438 26.473 hybrid contribution 0.807 -0.452 -0.030 0.926 sum -0.476 0.010 26.408 26.412 Atomic orbital electron populations 1.22133 0.93379 1.03173 1.02721 1.19058 0.94575 0.95518 0.78967 0.88162 1.46228 1.69254 1.14553 1.08553 1.21632 0.76271 0.87594 0.84318 1.90659 1.49234 1.16363 1.84823 1.21876 1.01029 1.01124 0.92879 1.18890 0.98354 0.93266 0.89401 1.21200 1.44318 0.96386 0.94621 0.92630 1.25014 0.95573 0.94845 0.98920 1.69983 1.48191 1.08149 1.26600 0.86655 0.79380 0.79375 0.82539 1.20234 1.21315 1.20266 1.23648 1.01403 0.88833 0.91020 1.70199 1.19875 1.11366 1.17652 1.22351 1.03964 0.98176 0.92423 1.22800 1.09399 0.87561 0.98302 1.42986 1.45838 1.04615 1.15386 1.17760 1.01777 0.81304 0.97059 1.21258 0.97968 0.94753 0.99010 1.21190 0.98738 0.93824 0.97720 1.21352 0.97601 1.00517 0.93567 1.21070 0.98776 0.92922 0.99638 1.21049 1.00221 0.95524 0.96623 0.90575 0.91374 0.92242 0.75808 0.90199 0.90002 0.95763 0.95874 0.92933 0.80758 0.80597 0.84861 0.84490 0.85084 0.84975 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.47 37.16 0.35 -1.74 16 2 C 0.23 3.27 2.79 -69.08 -0.19 3.08 16 3 H 0.10 1.54 4.97 -51.93 -0.26 1.29 16 4 N -0.73 -11.47 5.07 -54.93 -0.28 -11.75 16 5 C 0.51 10.05 7.79 -10.99 -0.09 9.96 16 6 O -0.54 -12.34 15.64 5.56 0.09 -12.26 16 7 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 8 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 9 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 10 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 13 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.21 2.86 6.59 -154.67 -1.02 1.84 16 18 N -0.47 -6.44 10.92 -10.64 -0.12 -6.55 16 19 C -0.02 -0.24 11.85 -17.81 -0.21 -0.45 16 20 C -0.05 -0.49 11.30 -16.47 -0.19 -0.68 16 21 N -0.41 -4.74 2.88 -57.84 -0.17 -4.91 16 22 C 0.11 1.19 5.81 -83.58 -0.49 0.71 16 23 C -0.11 -1.23 8.15 -39.41 -0.32 -1.55 16 24 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 25 C -0.11 -0.83 10.04 -39.55 -0.40 -1.23 16 26 C -0.11 -0.74 10.04 -39.61 -0.40 -1.13 16 27 C -0.11 -0.96 9.70 -39.41 -0.38 -1.34 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.41 5.83 8.33 -40.82 -0.34 5.49 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 1.68 7.32 -52.49 -0.38 1.30 16 40 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 368.64 15.07 5.56 5.56 Total: -1.00 -34.90 368.64 -9.63 -44.53 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.02 Total: 4.90 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -4.41 Total: -9.56 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.18 Total: -50.01 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.90 -9.63 -44.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291521021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.677 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds