Wall clock time and date at job start Fri Apr 10 2020 22:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99598 * 2 1 4 4 N 1.46899 * 109.47176 * 125.72478 * 3 2 1 5 5 C 1.46902 * 110.99979 * 300.91231 * 4 3 2 6 6 C 1.50699 * 109.46971 * 288.74610 * 5 4 3 7 7 H 1.08006 * 119.99830 * 4.96030 * 6 5 4 8 8 C 1.37876 * 119.99951 * 184.96531 * 6 5 4 9 9 N 1.31515 * 120.00151 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99769 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47200 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46861 * 120.00054 * 10 8 6 13 13 H 1.48500 * 109.46991 * 239.99674 * 10 8 6 14 14 C 1.46904 * 110.99974 * 64.86531 * 4 3 2 15 15 C 1.53000 * 109.47458 * 66.04303 * 14 4 3 16 16 C 1.50694 * 109.47123 * 179.97438 * 15 14 4 17 17 O 1.21280 * 120.00314 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99979 * 180.02562 * 16 15 14 19 19 C 1.39403 * 120.00394 * 185.39322 * 18 16 15 20 20 C 1.38791 * 120.16204 * 24.44490 * 19 18 16 21 21 C 1.38067 * 120.07829 * 179.97438 * 20 19 18 22 22 C 1.38537 * 120.40690 * 0.02562 * 21 20 19 23 23 C 1.37832 * 120.32477 * 0.02562 * 22 21 20 24 24 C 1.39700 * 119.91450 * 359.97329 * 23 22 21 25 25 C 1.43203 * 120.19670 * 180.02562 * 24 23 22 26 26 N 8.88850 * 157.76907 * 292.33096 * 2 1 3 27 27 H 1.07995 * 120.00221 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99766 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00221 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47308 * 5.72305 * 3 2 1 31 31 H 1.09001 * 109.47140 * 245.72293 * 3 2 1 32 32 H 1.08999 * 109.47088 * 48.74716 * 5 4 3 33 33 H 1.08999 * 109.47261 * 168.74501 * 5 4 3 34 34 H 0.97001 * 120.00047 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.46851 * 306.04400 * 14 4 3 36 36 H 1.09001 * 109.47335 * 186.05210 * 14 4 3 37 37 H 1.09002 * 109.46575 * 60.00395 * 15 14 4 38 38 H 1.08996 * 109.47173 * 300.00589 * 15 14 4 39 39 H 0.97011 * 119.99657 * 5.38611 * 18 16 15 40 40 H 1.08003 * 119.96434 * 0.26345 * 20 19 18 41 41 H 1.07996 * 119.79978 * 180.02562 * 21 20 19 42 42 H 1.07999 * 119.84094 * 179.97438 * 22 21 20 43 43 H 1.08002 * 120.04335 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0086 1.3249 1.1244 5 6 2.3067 1.1658 2.4050 6 6 1.5318 2.4211 2.7125 7 1 1.4928 3.2224 1.9894 8 6 0.8728 2.5468 3.9170 9 7 0.9199 1.5709 4.7974 10 14 -0.0872 4.1033 4.2985 11 1 0.0153 5.0415 3.1521 12 1 -1.5133 3.7607 4.5312 13 1 0.4728 4.7445 5.5152 14 6 4.0439 0.2958 0.9600 15 6 4.9132 0.6358 -0.2523 16 6 5.9756 -0.4197 -0.4205 17 8 6.0317 -1.3523 0.3528 18 7 6.8634 -0.3272 -1.4303 19 6 7.7742 -1.3586 -1.6544 20 6 7.4867 -2.6476 -1.2279 21 6 8.3897 -3.6679 -1.4511 22 6 9.5872 -3.4149 -2.1003 23 6 9.8901 -2.1408 -2.5300 24 6 8.9862 -1.0983 -2.3111 25 6 9.2946 0.2276 -2.7555 26 7 9.5378 1.2777 -3.1107 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3595 2.1310 0.1025 31 1 2.6110 1.4086 -0.9368 32 1 1.6202 0.3216 2.3406 33 1 3.0329 0.9838 3.1972 34 1 0.4560 1.6592 5.6447 35 1 3.5708 -0.6743 0.8072 36 1 4.6658 0.2598 1.8545 37 1 5.3862 1.6058 -0.0995 38 1 4.2913 0.6717 -1.1467 39 1 6.8686 0.4570 -2.0013 40 1 6.5535 -2.8539 -0.7248 41 1 8.1613 -4.6694 -1.1177 42 1 10.2871 -4.2197 -2.2698 43 1 10.8251 -1.9485 -3.0352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292104305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:55:19 Heat of formation + Delta-G solvation = 51.414371 kcal Electronic energy + Delta-G solvation = -24579.767494 eV Core-core repulsion = 21011.992976 eV Total energy + Delta-G solvation = -3567.774518 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06634 -39.07163 -37.45486 -36.74998 -35.16379 -32.84134 -32.78687 -31.66532 -31.03650 -29.59331 -26.92813 -25.55039 -24.25133 -23.78781 -22.27552 -20.88421 -20.50693 -19.46146 -18.70047 -17.71705 -17.30505 -16.20755 -16.11282 -15.55509 -15.49660 -14.90777 -14.81705 -14.43869 -14.31004 -14.27382 -13.96676 -13.54599 -13.42828 -13.17066 -12.99007 -12.83210 -12.55109 -12.20415 -12.11815 -11.88245 -11.72215 -11.13668 -10.99513 -10.93575 -10.78025 -10.74650 -10.55598 -10.48554 -9.98565 -9.83945 -9.32085 -9.22561 -8.76783 -8.49913 -8.40221 -7.29487 -6.00350 -4.01058 0.38036 0.92911 2.28642 2.36844 2.62797 2.65559 2.84591 3.31444 3.39065 3.43104 3.49559 3.55872 4.33309 4.42999 4.50672 4.65205 4.90225 4.98603 5.02067 5.07451 5.20566 5.33696 5.40526 5.48902 5.50073 5.66831 5.75988 5.77655 5.84642 5.98973 6.01416 6.13165 6.21422 6.37316 6.42200 6.53922 6.60628 6.93038 7.12203 7.14137 7.25695 7.28855 7.41240 7.78100 7.82273 8.08587 8.18562 8.53019 9.05479 9.62322 11.10546 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.002537 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.969842 B =11032.171238 C =11326.507593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.181 4.181 3 C 0.085 3.915 4 N -0.530 5.530 5 C 0.192 3.808 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.067 3.933 15 C -0.137 4.137 16 C 0.519 3.481 17 O -0.505 6.505 18 N -0.677 5.677 19 C 0.209 3.791 20 C -0.138 4.138 21 C -0.065 4.065 22 C -0.146 4.146 23 C -0.049 4.049 24 C -0.074 4.074 25 C 0.252 3.748 26 N -0.415 5.415 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.000 1.000 33 H 0.031 0.969 34 H 0.260 0.740 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.413 0.587 40 H 0.158 0.842 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.135 -10.518 -16.568 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.201 4.201 3 C -0.043 4.043 4 N -0.253 5.253 5 C 0.067 3.933 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.062 4.062 15 C -0.177 4.177 16 C 0.308 3.692 17 O -0.379 6.379 18 N -0.321 5.321 19 C 0.109 3.891 20 C -0.158 4.158 21 C -0.084 4.084 22 C -0.165 4.165 23 C -0.070 4.070 24 C -0.081 4.081 25 C -0.063 4.063 26 N -0.090 5.090 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.018 0.982 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.117 0.883 39 H 0.249 0.751 40 H 0.175 0.825 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.627 -9.059 -16.307 23.705 hybrid contribution -0.972 -0.052 0.239 1.002 sum 13.655 -9.112 -16.068 22.970 Atomic orbital electron populations 1.23701 0.96048 1.01158 1.00875 1.23555 0.96762 0.99848 0.99946 1.21325 0.94619 0.94552 0.93777 1.62432 1.13339 1.45141 1.04407 1.19770 0.92844 0.96752 0.83928 1.21140 1.29583 1.01846 1.01423 0.92013 1.24966 0.96875 0.96522 0.96232 1.69967 1.43704 1.32036 1.08070 0.86491 0.79553 0.83359 0.78301 1.19718 1.21187 1.21069 1.21779 0.94110 0.94178 0.96123 1.21783 0.95685 0.97862 1.02408 1.21289 0.81506 0.87717 0.78638 1.90684 1.71509 1.33807 1.41882 1.43775 1.33821 1.21115 1.33366 1.17782 0.87534 0.88691 0.95085 1.21494 1.02499 0.89826 1.01975 1.21355 0.92943 0.99352 0.94744 1.21060 0.98091 0.96568 1.00816 1.20975 0.97609 0.91404 0.96975 1.15757 0.95575 0.87215 1.09512 1.25570 0.94363 0.92748 0.93590 1.81263 1.07095 1.11173 1.09491 0.88479 0.89655 0.88537 0.89729 0.92124 0.98240 0.95135 0.93035 0.94538 0.90486 0.87584 0.88348 0.75092 0.82499 0.84826 0.84917 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 14.32 29.01 0.42 -2.62 16 2 C -0.18 -3.14 7.43 -36.03 -0.27 -3.40 16 3 C 0.09 1.51 5.46 -4.98 -0.03 1.49 16 4 N -0.53 -10.72 4.66 -237.51 -1.11 -11.83 16 5 C 0.19 4.87 4.57 -4.98 -0.02 4.85 16 6 C -0.50 -13.79 8.67 -34.44 -0.30 -14.09 16 7 H 0.06 1.68 7.29 -52.48 -0.38 1.30 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 10 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.07 1.15 4.09 -3.82 -0.02 1.14 16 15 C -0.14 -1.72 5.63 -27.89 -0.16 -1.87 16 16 C 0.52 6.40 7.64 -10.99 -0.08 6.31 16 17 O -0.51 -7.68 13.12 5.56 0.07 -7.61 16 18 N -0.68 -6.68 5.16 -9.67 -0.05 -6.73 16 19 C 0.21 2.03 6.44 -83.44 -0.54 1.49 16 20 C -0.14 -1.32 8.70 -39.44 -0.34 -1.66 16 21 C -0.06 -0.45 10.03 -39.53 -0.40 -0.85 16 22 C -0.15 -0.84 10.02 -39.62 -0.40 -1.23 16 23 C -0.05 -0.31 9.75 -39.18 -0.38 -0.70 16 24 C -0.07 -0.63 5.75 -106.65 -0.61 -1.25 16 25 C 0.25 2.51 14.25 -22.51 -0.32 2.19 16 26 N -0.41 -4.96 18.53 41.80 0.77 -4.19 16 27 H 0.10 1.65 7.84 -52.49 -0.41 1.24 16 28 H 0.09 1.30 8.06 -52.48 -0.42 0.87 16 29 H 0.10 1.61 6.78 -52.49 -0.36 1.25 16 30 H 0.08 1.65 6.80 -51.93 -0.35 1.29 16 31 H 0.06 0.88 6.26 -51.93 -0.33 0.56 16 32 H 0.00 0.00 6.70 -51.93 -0.35 -0.35 16 33 H 0.03 0.85 7.82 -51.93 -0.41 0.44 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.04 0.64 6.31 -51.93 -0.33 0.32 16 36 H 0.08 1.45 7.83 -51.93 -0.41 1.04 16 37 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.10 1.05 6.46 -51.93 -0.34 0.72 16 39 H 0.41 3.33 7.89 -40.82 -0.32 3.01 16 40 H 0.16 1.76 5.76 -52.48 -0.30 1.46 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 43 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -32.37 366.27 -8.15 -40.52 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.52 Total: 2.47 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.55 Total: -8.75 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.35 Total: -48.67 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.07 Total: -7.61 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.37 -8.15 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292104305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.932 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds