Wall clock time and date at job start Fri Apr 10 2020 22:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47028 * 2 1 4 4 N 1.46496 * 109.47394 * 120.00063 * 2 1 3 5 5 C 1.39663 * 120.00184 * 275.00075 * 4 2 1 6 6 C 1.38972 * 120.04890 * 0.02562 * 5 4 2 7 7 C 1.38114 * 120.03969 * 180.02562 * 6 5 4 8 8 C 1.38217 * 120.12557 * 359.97438 * 7 6 5 9 9 C 1.38768 * 120.09287 * 359.97438 * 8 7 6 10 10 O 1.35904 * 120.01829 * 180.02562 * 9 8 7 11 11 C 1.42903 * 116.99628 * 0.02562 * 10 9 8 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46725 * 60.00093 * 17 15 13 19 19 H 1.48505 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00069 * 17 15 13 21 21 C 1.38616 * 119.96821 * 0.30037 * 9 8 7 22 22 C 1.50701 * 109.47415 * 240.00612 * 2 1 3 23 23 C 1.38613 * 120.45007 * 84.71267 * 22 2 1 24 24 C 1.38580 * 118.40021 * 179.80758 * 23 22 2 25 25 N 1.32345 * 119.10404 * 0.47281 * 24 23 22 26 26 C 1.31782 * 120.82038 * 359.75190 * 25 24 23 27 27 N 1.31813 * 121.75225 * 0.02562 * 26 25 24 28 28 H 1.09007 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47282 * 299.99445 * 1 2 3 30 30 H 1.09006 * 109.47491 * 59.99967 * 1 2 3 31 31 H 0.97008 * 119.99867 * 94.99929 * 4 2 1 32 32 H 1.08001 * 119.97939 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.93596 * 180.02562 * 7 6 5 34 34 H 1.08005 * 119.95190 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.47382 * 59.99787 * 11 10 9 36 36 H 1.09001 * 109.46938 * 299.99774 * 11 10 9 37 37 H 1.09001 * 109.47194 * 299.99575 * 12 11 10 38 38 H 1.08992 * 109.47399 * 59.99748 * 12 11 10 39 39 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 40 40 H 1.07994 * 120.06528 * 179.70100 * 21 9 8 41 41 H 1.08000 * 120.80040 * 0.03188 * 23 22 2 42 42 H 1.08004 * 120.45074 * 180.22636 * 24 23 22 43 43 H 1.08002 * 119.12351 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1517 0.0061 2.3992 6 6 1.8210 1.3544 2.4630 7 6 1.9535 2.0433 3.6527 8 6 2.4146 1.3942 4.7825 9 6 2.7454 0.0477 4.7251 10 8 3.1981 -0.5891 5.8371 11 6 3.3081 0.1889 7.0307 12 6 3.8307 -0.6921 8.1672 13 6 3.9461 0.1283 9.4262 14 1 3.6744 1.1734 9.4164 15 6 4.3987 -0.4557 10.5904 16 7 4.7291 -1.7286 10.6023 17 14 4.5425 0.5613 12.1507 18 1 3.2075 1.1002 12.5150 19 1 5.0484 -0.2941 13.2542 20 1 5.4851 1.6859 11.9234 21 6 2.6193 -0.6460 3.5317 22 6 2.0324 -0.7103 -1.2305 23 6 2.1627 -0.0292 -2.4307 24 6 2.6326 -0.7229 -3.5346 25 7 2.9302 -2.0064 -3.4095 26 6 2.7892 -2.6226 -2.2531 27 7 2.3494 -1.9940 -1.1812 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.2491 -1.6318 1.1525 32 1 1.4609 1.8640 1.5814 33 1 1.6956 3.0909 3.7004 34 1 2.5167 1.9355 5.7115 35 1 2.3283 0.5845 7.2982 36 1 4.0001 1.0144 6.8638 37 1 3.1391 -1.5179 8.3343 38 1 4.8105 -1.0873 7.8995 39 1 5.0471 -2.1395 11.4214 40 1 2.8809 -1.6928 3.4841 41 1 1.9078 1.0178 -2.5030 42 1 2.7505 -0.2239 -4.4851 43 1 3.0407 -3.6705 -2.1818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395804614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:39 Heat of formation + Delta-G solvation = 31.792455 kcal Electronic energy + Delta-G solvation = -24023.612192 eV Core-core repulsion = 20454.986805 eV Total energy + Delta-G solvation = -3568.625388 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56756 -39.76840 -38.07689 -36.15070 -33.79538 -33.31953 -32.89520 -31.10377 -30.50015 -29.03038 -28.14533 -25.48543 -24.98498 -24.78160 -22.74785 -22.43730 -21.16826 -20.24236 -18.38641 -17.77501 -17.58559 -16.35190 -15.99385 -15.88628 -15.59590 -15.39294 -15.28785 -15.22682 -14.74630 -14.37173 -14.05164 -13.91379 -13.81330 -13.34944 -12.76610 -12.71338 -12.44938 -12.28507 -11.96209 -11.58118 -11.50668 -11.37134 -11.16904 -11.06094 -10.87286 -10.75074 -10.41706 -10.20241 -9.99299 -9.76536 -9.66383 -9.61391 -9.27540 -8.42059 -7.93419 -7.33761 -6.07245 -4.11765 0.40152 0.55318 1.72763 1.87215 3.08074 3.29875 3.30749 3.34982 3.36995 3.43251 3.71387 3.96708 4.08472 4.13222 4.43018 4.45838 4.55023 4.68386 4.79836 4.97849 5.06699 5.13002 5.28380 5.28912 5.33615 5.40354 5.56194 5.61613 5.76311 5.81750 5.88540 6.10768 6.11087 6.14087 6.38625 6.49739 6.64446 6.67883 6.76650 6.90579 7.36898 7.54826 7.60131 7.68549 7.73844 7.86572 8.14507 8.27877 8.93702 9.52189 11.04289 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.030583 B = 0.002014 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.321457 B =13897.456089 C =14511.358007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.202 3.798 3 H 0.101 0.899 4 N -0.736 5.736 5 C 0.248 3.752 6 C -0.249 4.249 7 C -0.036 4.036 8 C -0.264 4.264 9 C 0.189 3.811 10 O -0.316 6.316 11 C 0.066 3.934 12 C 0.025 3.975 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.235 4.235 22 C 0.175 3.825 23 C -0.221 4.221 24 C 0.151 3.849 25 N -0.524 5.524 26 C 0.301 3.699 27 N -0.514 5.514 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.410 0.590 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.264 0.736 40 H 0.125 0.875 41 H 0.150 0.850 42 H 0.170 0.830 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 5.123 -28.951 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.095 3.905 3 H 0.118 0.882 4 N -0.368 5.368 5 C 0.146 3.854 6 C -0.271 4.271 7 C -0.055 4.055 8 C -0.285 4.285 9 C 0.141 3.859 10 O -0.228 6.228 11 C -0.008 4.008 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.259 4.259 22 C 0.028 3.972 23 C -0.243 4.243 24 C -0.014 4.014 25 N -0.238 5.238 26 C 0.014 3.986 27 N -0.228 5.228 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.247 0.753 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.168 0.832 42 H 0.187 0.813 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.569 3.908 -28.858 30.089 hybrid contribution -0.033 1.206 0.818 1.457 sum -7.602 5.114 -28.040 29.499 Atomic orbital electron populations 1.22290 0.93743 1.03303 1.03026 1.19717 0.94329 0.95628 0.80862 0.88155 1.44481 1.73550 1.12973 1.05811 1.17335 0.92146 0.90921 0.84995 1.20387 1.14611 0.93169 0.98967 1.20604 0.94538 0.98715 0.91633 1.21152 1.12136 0.94661 1.00502 1.18823 0.89669 0.90491 0.86940 1.86155 1.78805 1.40321 1.17568 1.23316 0.99904 0.95478 0.82070 1.19125 0.97314 0.95247 0.89543 1.20942 1.45146 0.96413 0.93927 0.92400 1.24994 0.95123 0.95026 0.99092 1.69965 1.43813 1.10913 1.28095 0.86546 0.78532 0.79954 0.82320 1.20106 1.21147 1.20106 1.19664 1.14786 1.00913 0.90500 1.21838 0.90280 0.90209 0.94921 1.22690 1.03752 1.03284 0.94585 1.23254 0.89576 0.89835 0.98743 1.68447 1.17090 1.10696 1.27592 1.25044 0.90000 1.00725 0.82879 1.68082 1.12611 1.09450 1.32705 0.91799 0.90469 0.91687 0.75258 0.86683 0.86353 0.85579 0.93077 0.93103 0.95423 0.95438 0.92679 0.85696 0.83188 0.81253 0.78495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.41 37.15 0.35 -0.80 16 2 C 0.20 1.61 2.55 -69.09 -0.18 1.44 16 3 H 0.10 0.70 6.47 -51.93 -0.34 0.36 16 4 N -0.74 -7.91 5.22 -53.31 -0.28 -8.19 16 5 C 0.25 3.28 6.63 -83.81 -0.56 2.73 16 6 C -0.25 -3.03 8.84 -39.36 -0.35 -3.38 16 7 C -0.04 -0.48 10.03 -39.63 -0.40 -0.87 16 8 C -0.26 -4.27 9.04 -39.39 -0.36 -4.62 16 9 C 0.19 3.43 6.68 -39.25 -0.26 3.17 16 10 O -0.32 -6.74 10.13 -19.44 -0.20 -6.93 16 11 C 0.07 1.46 4.68 37.16 0.17 1.63 16 12 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 13 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 17 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.24 -3.76 9.83 -39.23 -0.39 -4.15 16 22 C 0.17 1.40 5.92 -82.24 -0.49 0.92 16 23 C -0.22 -1.28 9.88 -39.32 -0.39 -1.67 16 24 C 0.15 0.92 11.30 -17.20 -0.19 0.72 16 25 N -0.52 -4.33 10.44 -14.58 -0.15 -4.48 16 26 C 0.30 2.45 12.29 -92.15 -1.13 1.32 16 27 N -0.51 -4.73 9.20 -10.79 -0.10 -4.83 16 28 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.08 0.59 7.70 -51.93 -0.40 0.19 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.41 4.56 7.69 -40.82 -0.31 4.25 16 32 H 0.12 1.08 6.11 -52.49 -0.32 0.76 16 33 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.13 2.02 6.29 -52.48 -0.33 1.69 16 35 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 36 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 41 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.17 0.47 8.06 -52.48 -0.42 0.05 16 43 H 0.20 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -32.82 364.61 -10.08 -42.90 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.84 Total: 2.20 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -4.72 Total: -16.59 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.21 Total: -43.50 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.20 Total: -6.93 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.82 -10.08 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395804614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.694 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds