Wall clock time and date at job start Fri Apr 10 2020 22:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47028 * 2 1 4 4 N 1.46496 * 109.47394 * 120.00063 * 2 1 3 5 5 C 1.39663 * 120.00184 * 275.00075 * 4 2 1 6 6 C 1.38972 * 120.04890 * 0.02562 * 5 4 2 7 7 C 1.38114 * 120.03969 * 180.02562 * 6 5 4 8 8 C 1.38217 * 120.12557 * 359.97438 * 7 6 5 9 9 C 1.38768 * 120.09287 * 359.97438 * 8 7 6 10 10 O 1.35904 * 120.01829 * 180.02562 * 9 8 7 11 11 C 1.42903 * 116.99628 * 0.02562 * 10 9 8 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46725 * 60.00093 * 17 15 13 19 19 H 1.48505 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00069 * 17 15 13 21 21 C 1.38616 * 119.96821 * 0.30037 * 9 8 7 22 22 C 1.50701 * 109.47415 * 240.00612 * 2 1 3 23 23 C 1.38613 * 120.45007 * 84.71267 * 22 2 1 24 24 C 1.38580 * 118.40021 * 179.80758 * 23 22 2 25 25 N 1.32345 * 119.10404 * 0.47281 * 24 23 22 26 26 C 1.31782 * 120.82038 * 359.75190 * 25 24 23 27 27 N 1.31813 * 121.75225 * 0.02562 * 26 25 24 28 28 H 1.09007 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47282 * 299.99445 * 1 2 3 30 30 H 1.09006 * 109.47491 * 59.99967 * 1 2 3 31 31 H 0.97008 * 119.99867 * 94.99929 * 4 2 1 32 32 H 1.08001 * 119.97939 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.93596 * 180.02562 * 7 6 5 34 34 H 1.08005 * 119.95190 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.47382 * 59.99787 * 11 10 9 36 36 H 1.09001 * 109.46938 * 299.99774 * 11 10 9 37 37 H 1.09001 * 109.47194 * 299.99575 * 12 11 10 38 38 H 1.08992 * 109.47399 * 59.99748 * 12 11 10 39 39 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 40 40 H 1.07994 * 120.06528 * 179.70100 * 21 9 8 41 41 H 1.08000 * 120.80040 * 0.03188 * 23 22 2 42 42 H 1.08004 * 120.45074 * 180.22636 * 24 23 22 43 43 H 1.08002 * 119.12351 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1517 0.0061 2.3992 6 6 1.8210 1.3544 2.4630 7 6 1.9535 2.0433 3.6527 8 6 2.4146 1.3942 4.7825 9 6 2.7454 0.0477 4.7251 10 8 3.1981 -0.5891 5.8371 11 6 3.3081 0.1889 7.0307 12 6 3.8307 -0.6921 8.1672 13 6 3.9461 0.1283 9.4262 14 1 3.6744 1.1734 9.4164 15 6 4.3987 -0.4557 10.5904 16 7 4.7291 -1.7286 10.6023 17 14 4.5425 0.5613 12.1507 18 1 3.2075 1.1002 12.5150 19 1 5.0484 -0.2941 13.2542 20 1 5.4851 1.6859 11.9234 21 6 2.6193 -0.6460 3.5317 22 6 2.0324 -0.7103 -1.2305 23 6 2.1627 -0.0292 -2.4307 24 6 2.6326 -0.7229 -3.5346 25 7 2.9302 -2.0064 -3.4095 26 6 2.7892 -2.6226 -2.2531 27 7 2.3494 -1.9940 -1.1812 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.2491 -1.6318 1.1525 32 1 1.4609 1.8640 1.5814 33 1 1.6956 3.0909 3.7004 34 1 2.5167 1.9355 5.7115 35 1 2.3283 0.5845 7.2982 36 1 4.0001 1.0144 6.8638 37 1 3.1391 -1.5179 8.3343 38 1 4.8105 -1.0873 7.8995 39 1 5.0471 -2.1395 11.4214 40 1 2.8809 -1.6928 3.4841 41 1 1.9078 1.0178 -2.5030 42 1 2.7505 -0.2239 -4.4851 43 1 3.0407 -3.6705 -2.1818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395804614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:38 Heat of formation + Delta-G solvation = 12.310165 kcal Electronic energy + Delta-G solvation = -24024.457008 eV Core-core repulsion = 20454.986805 eV Total energy + Delta-G solvation = -3569.470203 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.10020 -41.00971 -39.25335 -37.11258 -35.45255 -34.43498 -33.54539 -32.56282 -31.63865 -30.36001 -29.11410 -26.96730 -25.99062 -25.36416 -23.82469 -23.72757 -22.46783 -21.51162 -19.42810 -18.66831 -18.42166 -18.10729 -17.04789 -16.90068 -16.68925 -16.49685 -16.39091 -16.34473 -15.96212 -15.56390 -14.76229 -14.61021 -14.51279 -14.37220 -14.28844 -14.17645 -14.06017 -13.23638 -13.14562 -13.06988 -12.69243 -12.56024 -12.49772 -12.27479 -11.96215 -11.82306 -11.77446 -11.59369 -11.55034 -11.38297 -10.95787 -10.60907 -10.55511 -10.27336 -9.21306 -8.35475 -8.25767 -6.39782 -0.10402 0.06108 0.59256 0.70998 1.41140 1.45710 1.53612 2.12632 2.38428 2.68985 2.77717 2.89446 2.99039 3.08231 3.27993 3.53788 3.96193 4.01054 4.09763 4.18223 4.22536 4.26325 4.29798 4.34980 4.38497 4.49847 4.58420 4.67148 4.69934 4.75635 4.79942 4.85814 5.02806 5.24473 5.30349 5.34572 5.39997 5.47377 5.54252 5.65627 5.68568 5.77187 5.99222 6.07776 6.42573 6.62932 6.74789 6.76995 7.08287 7.30162 8.87224 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.030583 B = 0.002014 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.321457 B =13897.456089 C =14511.358007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.200 3.800 3 H 0.121 0.879 4 N -0.733 5.733 5 C 0.256 3.744 6 C -0.235 4.235 7 C -0.029 4.029 8 C -0.282 4.282 9 C 0.152 3.848 10 O -0.345 6.345 11 C 0.087 3.913 12 C 0.028 3.972 13 C -0.546 4.546 14 H 0.072 0.928 15 C -0.001 4.001 16 N -0.932 5.932 17 Si 0.978 3.022 18 H -0.263 1.263 19 H -0.283 1.283 20 H -0.263 1.263 21 C -0.256 4.256 22 C 0.155 3.845 23 C -0.209 4.209 24 C 0.145 3.855 25 N -0.544 5.544 26 C 0.286 3.714 27 N -0.540 5.540 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.406 0.594 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.122 0.878 35 H 0.060 0.940 36 H 0.060 0.940 37 H -0.003 1.003 38 H -0.003 1.003 39 H 0.267 0.733 40 H 0.114 0.886 41 H 0.186 0.814 42 H 0.203 0.797 43 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.978 8.516 -30.975 33.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.094 3.906 3 H 0.139 0.861 4 N -0.363 5.363 5 C 0.151 3.849 6 C -0.257 4.257 7 C -0.047 4.047 8 C -0.302 4.302 9 C 0.106 3.894 10 O -0.259 6.259 11 C 0.013 3.987 12 C -0.010 4.010 13 C -0.584 4.584 14 H 0.090 0.910 15 C -0.199 4.199 16 N -0.571 5.571 17 Si 0.801 3.199 18 H -0.188 1.188 19 H -0.208 1.208 20 H -0.188 1.188 21 C -0.279 4.279 22 C 0.008 3.992 23 C -0.231 4.231 24 C -0.020 4.020 25 N -0.259 5.259 26 C -0.001 4.001 27 N -0.255 5.255 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.242 0.758 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.140 0.860 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.075 0.925 40 H 0.132 0.868 41 H 0.204 0.796 42 H 0.220 0.780 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.688 7.310 -30.940 32.957 hybrid contribution 0.264 0.108 1.190 1.224 sum -8.424 7.418 -29.749 31.796 Atomic orbital electron populations 1.22247 0.92811 1.02576 1.04157 1.19989 0.94939 0.96171 0.79542 0.86123 1.44666 1.72672 1.12927 1.06013 1.17413 0.91028 0.91584 0.84869 1.20811 1.12557 0.92362 0.99978 1.20998 0.92809 1.00268 0.90648 1.21243 1.13402 0.93816 1.01761 1.19144 0.92078 0.91888 0.86327 1.86061 1.80343 1.41166 1.18308 1.22840 1.00196 0.94228 0.81483 1.18975 0.95091 0.95165 0.91734 1.21372 1.45221 0.97195 0.94599 0.91005 1.26084 0.94378 0.96267 1.03166 1.70121 1.44656 1.13004 1.29301 0.85308 0.79188 0.78228 0.77154 1.18764 1.20791 1.18764 1.19755 1.16221 1.00777 0.91180 1.21999 0.91170 0.90184 0.95828 1.23029 1.02103 1.04713 0.93242 1.23886 0.88613 0.89216 1.00268 1.68482 1.17726 1.12094 1.27575 1.25327 0.90390 1.01496 0.82913 1.68048 1.13535 1.10518 1.33412 0.93522 0.90809 0.88985 0.75787 0.82777 0.82822 0.86020 0.92157 0.92207 0.98464 0.98494 0.92457 0.86785 0.79645 0.78042 0.77352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.41 71.98 0.68 -1.08 16 2 C 0.20 2.60 2.55 44.24 0.11 2.72 16 3 H 0.12 1.10 6.47 -2.38 -0.02 1.08 16 4 N -0.73 -14.84 5.22 -322.57 -1.69 -16.52 16 5 C 0.26 6.44 6.63 38.20 0.25 6.69 16 6 C -0.23 -4.92 8.84 22.42 0.20 -4.72 16 7 C -0.03 -0.67 10.03 22.24 0.22 -0.45 16 8 C -0.28 -8.98 9.04 22.39 0.20 -8.78 16 9 C 0.15 5.72 6.68 22.49 0.15 5.87 16 10 O -0.34 -15.65 10.13 -92.47 -0.94 -16.59 16 11 C 0.09 4.00 4.68 71.98 0.34 4.33 16 12 C 0.03 1.56 5.34 29.85 0.16 1.72 16 13 C -0.55 -31.52 9.11 25.60 0.23 -31.28 16 14 H 0.07 3.85 7.74 -2.91 -0.02 3.82 16 15 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 16 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 17 Si 0.98 44.09 29.54 68.60 2.03 46.12 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 21 C -0.26 -8.45 9.83 22.49 0.22 -8.23 16 22 C 0.15 2.14 5.92 42.58 0.25 2.40 16 23 C -0.21 -1.70 9.88 22.44 0.22 -1.48 16 24 C 0.15 1.36 11.30 84.70 0.96 2.32 16 25 N -0.54 -8.31 10.44 -200.04 -2.09 -10.40 16 26 C 0.29 4.58 12.29 180.88 2.22 6.80 16 27 N -0.54 -9.63 9.20 -188.07 -1.73 -11.36 16 28 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.07 0.88 7.70 -2.39 -0.02 0.87 16 30 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.41 9.07 7.69 -92.70 -0.71 8.36 16 32 H 0.15 2.02 6.11 -2.91 -0.02 2.01 16 33 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.12 3.89 6.29 -2.91 -0.02 3.87 16 35 H 0.06 2.61 7.66 -2.39 -0.02 2.59 16 36 H 0.06 2.59 7.66 -2.39 -0.02 2.57 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.11 3.85 8.06 -2.91 -0.02 3.83 16 41 H 0.19 0.07 8.06 -2.91 -0.02 0.05 16 42 H 0.20 0.38 8.06 -2.91 -0.02 0.35 16 43 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -75.25 364.61 3.07 -72.18 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.31 Total: 16.79 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 6.88 Total: -22.75 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -5.22 Total: -95.76 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.94 Total: -16.59 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -75.25 3.07 -72.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395804614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.491 kcal (2) G-P(sol) polarization free energy of solvation -75.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds