Wall clock time and date at job start Fri Apr 10 2020 22:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 5 5 C 1.39671 * 119.99620 * 85.28019 * 4 2 1 6 6 C 1.38966 * 120.05019 * 359.71763 * 5 4 2 7 7 C 1.38107 * 120.03767 * 180.02562 * 6 5 4 8 8 C 1.38220 * 120.12979 * 359.95796 * 7 6 5 9 9 C 1.38769 * 120.08729 * 0.02562 * 8 7 6 10 10 O 1.35899 * 120.01554 * 179.97438 * 9 8 7 11 11 C 1.42902 * 117.00341 * 359.97438 * 10 9 8 12 12 C 1.52990 * 109.47542 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47459 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99765 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00542 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00106 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00318 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47094 * 59.99811 * 17 15 13 19 19 H 1.48495 * 109.47021 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46728 * 299.99449 * 17 15 13 21 21 C 1.38617 * 119.96976 * 359.74752 * 9 8 7 22 22 C 1.50706 * 109.46812 * 119.99589 * 2 1 3 23 23 C 1.38620 * 120.45024 * 274.71840 * 22 2 1 24 24 C 1.38575 * 118.39991 * 179.76315 * 23 22 2 25 25 N 1.32353 * 119.10293 * 0.51609 * 24 23 22 26 26 C 1.31777 * 120.81942 * 359.75227 * 25 24 23 27 27 N 1.31816 * 121.75527 * 359.97249 * 26 25 24 28 28 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 29 29 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 30 30 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99790 * 264.99588 * 4 2 1 32 32 H 1.08007 * 119.97799 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.93995 * 179.97438 * 7 6 5 34 34 H 1.07997 * 119.95664 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.47039 * 300.00795 * 11 10 9 36 36 H 1.09004 * 109.46646 * 60.00132 * 11 10 9 37 37 H 1.08998 * 109.47530 * 300.00405 * 12 11 10 38 38 H 1.09004 * 109.47115 * 60.00331 * 12 11 10 39 39 H 0.96998 * 120.00491 * 180.02562 * 16 15 13 40 40 H 1.07993 * 120.06504 * 180.27468 * 21 9 8 41 41 H 1.08004 * 120.79651 * 0.03259 * 23 22 2 42 42 H 1.07995 * 120.44566 * 180.26881 * 24 23 22 43 43 H 1.08002 * 119.12116 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1573 0.0076 -2.3978 6 6 1.8270 1.3559 -2.4614 7 6 1.9640 2.0459 -3.6498 8 6 2.4304 1.3983 -4.7783 9 6 2.7621 0.0521 -4.7207 10 8 3.2201 -0.5834 -5.8313 11 6 3.3346 0.1957 -7.0238 12 6 3.8614 -0.6841 -8.1591 13 6 3.9828 0.1376 -9.4166 14 1 3.7116 1.1830 -9.4067 15 6 4.4399 -0.4450 -10.5795 16 7 4.7706 -1.7179 -10.5914 17 14 4.5910 0.5738 -12.1380 18 1 5.5333 1.6976 -11.9053 19 1 5.1011 -0.2804 -13.2403 20 1 3.2580 1.1139 -12.5073 21 6 2.6306 -0.6431 -3.5287 22 6 2.0323 -0.7104 1.2306 23 6 2.1737 -0.0264 2.4280 24 6 2.6344 -0.7225 3.5342 25 7 2.9319 -2.0061 3.4090 26 6 2.7901 -2.6224 2.2529 27 7 2.3496 -1.9939 1.1812 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2491 -1.6318 -1.1525 32 1 1.4630 1.8645 -1.5808 33 1 1.7065 3.0937 -3.6976 34 1 2.5369 1.9407 -5.7061 35 1 2.3556 0.5908 -7.2950 36 1 4.0251 1.0216 -6.8532 37 1 4.8403 -1.0796 -7.8881 38 1 3.1705 -1.5098 -8.3296 39 1 5.0926 -2.1277 -11.4095 40 1 2.8925 -1.6897 -3.4810 41 1 1.9266 1.0226 2.4981 42 1 2.7528 -0.2233 4.4845 43 1 3.0406 -3.6705 2.1818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395804618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:41 Heat of formation + Delta-G solvation = 31.806638 kcal Electronic energy + Delta-G solvation = -24024.108968 eV Core-core repulsion = 20455.484195 eV Total energy + Delta-G solvation = -3568.624773 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56715 -39.76917 -38.07689 -36.15086 -33.79505 -33.31972 -32.89377 -31.10534 -30.50167 -29.03130 -28.14474 -25.48611 -24.98555 -24.78182 -22.74754 -22.43710 -21.16809 -20.24277 -18.38738 -17.77384 -17.58660 -16.35206 -15.99571 -15.88651 -15.59453 -15.39071 -15.28893 -15.22732 -14.74717 -14.37193 -14.04971 -13.91306 -13.81608 -13.34970 -12.76718 -12.71195 -12.44881 -12.28549 -11.96105 -11.58125 -11.50675 -11.37181 -11.16870 -11.06118 -10.87309 -10.75101 -10.41715 -10.20136 -9.99427 -9.76571 -9.66409 -9.61464 -9.27524 -8.42023 -7.93449 -7.33824 -6.07237 -4.11788 0.40188 0.55290 1.72734 1.87187 3.08085 3.29907 3.30755 3.35001 3.36991 3.43289 3.71402 3.96665 4.08490 4.13167 4.43020 4.45817 4.55036 4.68364 4.79969 4.97879 5.06684 5.13080 5.28475 5.28897 5.33590 5.40340 5.56174 5.61627 5.76372 5.81777 5.88562 6.10722 6.11069 6.14073 6.38596 6.49727 6.64427 6.67866 6.76640 6.90550 7.36861 7.54772 7.60132 7.68499 7.73849 7.86552 8.14498 8.27870 8.93669 9.52195 11.04293 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.030503 B = 0.002015 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.734685 B =13891.000570 C =14504.260761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.202 3.798 3 H 0.101 0.899 4 N -0.736 5.736 5 C 0.248 3.752 6 C -0.249 4.249 7 C -0.036 4.036 8 C -0.264 4.264 9 C 0.189 3.811 10 O -0.316 6.316 11 C 0.066 3.934 12 C 0.025 3.975 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.235 4.235 22 C 0.175 3.825 23 C -0.221 4.221 24 C 0.151 3.849 25 N -0.524 5.524 26 C 0.301 3.699 27 N -0.514 5.514 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.410 0.590 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.264 0.736 40 H 0.125 0.875 41 H 0.150 0.850 42 H 0.170 0.830 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.975 5.100 28.923 30.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.095 3.905 3 H 0.118 0.882 4 N -0.368 5.368 5 C 0.146 3.854 6 C -0.271 4.271 7 C -0.055 4.055 8 C -0.285 4.285 9 C 0.141 3.859 10 O -0.229 6.229 11 C -0.008 4.008 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.259 4.259 22 C 0.027 3.973 23 C -0.243 4.243 24 C -0.014 4.014 25 N -0.238 5.238 26 C 0.013 3.987 27 N -0.228 5.228 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.247 0.753 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.168 0.832 42 H 0.187 0.813 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.665 3.885 28.829 30.083 hybrid contribution -0.023 1.208 -0.817 1.459 sum -7.688 5.094 28.012 29.491 Atomic orbital electron populations 1.22286 0.93741 1.03304 1.03018 1.19720 0.94349 0.95618 0.80853 0.88155 1.44484 1.73521 1.12904 1.05909 1.17335 0.92133 0.90909 0.85023 1.20385 1.14580 0.93164 0.99002 1.20603 0.94533 0.98716 0.91636 1.21152 1.12085 0.94676 1.00540 1.18823 0.89647 0.90502 0.86949 1.86153 1.78630 1.40347 1.17721 1.23313 0.99900 0.95451 0.82099 1.19122 0.97289 0.95255 0.89565 1.20941 1.45036 0.96383 0.94058 0.92403 1.24995 0.95132 0.95028 0.99082 1.69968 1.43725 1.10953 1.28149 0.86543 0.78531 0.79961 0.82310 1.20106 1.21148 1.20108 1.19663 1.14702 1.00917 0.90580 1.21842 0.90266 0.90219 0.94936 1.22694 1.03775 1.03229 0.94603 1.23253 0.89591 0.89842 0.98728 1.68448 1.16985 1.10737 1.27648 1.25044 0.90014 1.00712 0.82883 1.68082 1.12623 1.09508 1.32628 0.91686 0.90481 0.91794 0.75259 0.86681 0.86353 0.85578 0.93082 0.93100 0.95440 0.95420 0.92680 0.85696 0.83187 0.81256 0.78495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.41 37.16 0.35 -0.80 16 2 C 0.20 1.61 2.55 -69.08 -0.18 1.44 16 3 H 0.10 0.70 6.46 -51.93 -0.34 0.36 16 4 N -0.74 -7.91 5.22 -53.31 -0.28 -8.19 16 5 C 0.25 3.28 6.64 -83.81 -0.56 2.73 16 6 C -0.25 -3.03 8.86 -39.36 -0.35 -3.38 16 7 C -0.04 -0.48 10.03 -39.64 -0.40 -0.87 16 8 C -0.26 -4.27 9.04 -39.39 -0.36 -4.62 16 9 C 0.19 3.43 6.68 -39.25 -0.26 3.17 16 10 O -0.32 -6.74 10.13 -19.42 -0.20 -6.93 16 11 C 0.07 1.46 4.68 37.15 0.17 1.64 16 12 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 13 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 17 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.24 -3.76 9.83 -39.24 -0.39 -4.15 16 22 C 0.17 1.40 5.92 -82.24 -0.49 0.92 16 23 C -0.22 -1.29 9.88 -39.32 -0.39 -1.67 16 24 C 0.15 0.92 11.30 -17.20 -0.19 0.72 16 25 N -0.52 -4.33 10.44 -14.58 -0.15 -4.49 16 26 C 0.30 2.46 12.29 -92.15 -1.13 1.32 16 27 N -0.51 -4.73 9.20 -10.79 -0.10 -4.83 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.59 7.72 -51.93 -0.40 0.19 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.41 4.56 7.68 -40.82 -0.31 4.25 16 32 H 0.12 1.08 6.11 -52.48 -0.32 0.76 16 33 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.13 2.02 6.29 -52.49 -0.33 1.69 16 35 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 36 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 41 H 0.15 0.43 8.06 -52.48 -0.42 0.01 16 42 H 0.17 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.20 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -32.82 364.65 -10.08 -42.90 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.84 Total: 2.20 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -4.72 Total: -16.59 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.21 Total: -43.50 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.20 Total: -6.93 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.82 -10.08 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395804618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.710 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds