Wall clock time and date at job start Fri Apr 10 2020 22:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47208 * 2 1 4 4 N 1.46504 * 109.47234 * 119.99830 * 2 1 3 5 5 C 1.37687 * 126.50080 * 300.02751 * 4 2 1 6 6 C 1.34377 * 106.95828 * 179.97438 * 5 4 2 7 7 N 1.34369 * 108.34859 * 359.74244 * 6 5 4 8 8 C 1.31269 * 109.30104 * 0.42996 * 7 6 5 9 9 S 1.76203 * 125.80394 * 179.83058 * 8 7 6 10 10 C 1.81001 * 99.99829 * 359.70004 * 9 8 7 11 11 C 1.52998 * 109.47034 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.47135 * 59.99405 * 11 10 9 13 13 O 1.42897 * 109.46674 * 299.99412 * 11 10 9 14 14 C 1.53004 * 109.46799 * 179.97438 * 11 10 9 15 15 N 1.46898 * 109.46619 * 184.99872 * 14 11 10 16 16 C 1.46901 * 111.00443 * 66.04574 * 15 14 11 17 17 C 1.46906 * 110.99820 * 189.99887 * 15 14 11 18 18 C 1.50696 * 109.47351 * 169.99890 * 17 15 14 19 19 H 1.08007 * 119.99780 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00506 * 180.02562 * 18 17 15 21 21 N 1.31515 * 119.99253 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00341 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47279 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47075 * 119.99817 * 22 20 18 25 25 H 1.48496 * 109.46942 * 240.00005 * 22 20 18 26 26 H 1.09000 * 109.47255 * 300.00092 * 1 2 3 27 27 H 1.09007 * 109.47094 * 60.00106 * 1 2 3 28 28 H 1.09001 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47255 * 239.99908 * 2 1 3 30 30 H 1.08999 * 109.47468 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47328 * 299.99680 * 3 2 1 32 32 H 1.08999 * 109.47579 * 59.99613 * 3 2 1 33 33 H 1.07999 * 126.52107 * 359.97438 * 5 4 2 34 34 H 1.08001 * 125.82995 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47418 * 59.99347 * 10 9 8 36 36 H 1.09009 * 109.46586 * 299.99805 * 10 9 8 37 37 H 0.96701 * 114.00549 * 300.00026 * 13 11 10 38 38 H 1.08994 * 109.47270 * 64.99737 * 14 11 10 39 39 H 1.08999 * 109.47017 * 304.99614 * 14 11 10 40 40 H 1.09002 * 109.47401 * 183.95136 * 16 15 14 41 41 H 1.09001 * 109.46874 * 63.95149 * 16 15 14 42 42 H 1.09004 * 109.46970 * 303.95282 * 16 15 14 43 43 H 1.08997 * 109.46995 * 289.99871 * 17 15 14 44 44 H 1.09001 * 109.46848 * 49.99877 * 17 15 14 45 45 H 0.96999 * 119.99606 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7692 -0.3391 2.5039 6 6 2.4029 -1.2359 3.2784 7 7 3.0224 -2.1214 2.4800 8 6 2.8039 -1.8017 1.2257 9 16 3.4172 -2.6680 -0.1808 10 6 4.3476 -3.9846 0.6421 11 6 4.9893 -4.8904 -0.4108 12 1 5.6643 -4.3027 -1.0329 13 8 3.9691 -5.4674 -1.2282 14 6 5.7763 -6.0029 0.2849 15 7 6.4895 -6.8008 -0.7213 16 6 7.5274 -6.0026 -1.3874 17 6 7.0620 -8.0138 -0.1221 18 6 7.5681 -8.9222 -1.2128 19 1 7.4744 -8.6276 -2.2477 20 6 8.1509 -10.1292 -0.8898 21 7 8.2655 -10.4876 0.3704 22 14 8.7790 -11.2548 -2.2418 23 1 8.5333 -10.6251 -3.5641 24 1 10.2360 -11.4785 -2.0626 25 1 8.0663 -12.5558 -2.1736 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.1770 0.4981 2.8428 34 1 2.4092 -1.2461 4.3584 35 1 3.6727 -4.5720 1.2647 36 1 5.1260 -3.5444 1.2654 37 1 3.3310 -6.0054 -0.7397 38 1 5.0887 -6.6440 0.8365 39 1 6.4952 -5.5621 0.9755 40 1 7.9923 -6.5955 -2.1750 41 1 8.2835 -5.7093 -0.6590 42 1 7.0764 -5.1105 -1.8222 43 1 7.8875 -7.7398 0.5347 44 1 6.2950 -8.5309 0.4546 45 1 8.6752 -11.3369 0.5977 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414116148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:48 Heat of formation + Delta-G solvation = 10.113143 kcal Electronic energy + Delta-G solvation = -23383.079755 eV Core-core repulsion = 19948.958233 eV Total energy + Delta-G solvation = -3434.121522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.05612 -38.05675 -36.39994 -35.51329 -32.52895 -31.24820 -30.83960 -29.76663 -27.85936 -27.44413 -26.60779 -24.22122 -23.31771 -21.99235 -21.50895 -20.49328 -20.23207 -18.07519 -16.64060 -16.13033 -16.01627 -15.64515 -15.43615 -15.07349 -14.89376 -14.55715 -14.34055 -14.20017 -13.99027 -13.74688 -13.52969 -13.02520 -12.87406 -12.75407 -12.66984 -12.29608 -11.96245 -11.89341 -11.69552 -11.36760 -11.29854 -10.91221 -10.88649 -10.68681 -10.57322 -10.30813 -10.18045 -10.05505 -9.88768 -9.67090 -9.51358 -9.11431 -8.41964 -7.51206 -7.20232 -6.00742 -4.01592 1.12315 1.70793 2.06987 2.57478 2.88647 3.33140 3.40395 3.45978 4.05564 4.36161 4.40621 4.46127 4.56121 4.57034 4.68957 4.95112 4.99342 5.01981 5.08902 5.13736 5.21318 5.28561 5.36430 5.37441 5.41356 5.53398 5.58225 5.59710 5.72001 5.96209 6.04006 6.18551 6.27380 6.38310 6.50045 6.71719 6.77254 7.28013 7.34093 7.71528 7.81505 7.91655 8.10348 8.20585 8.56063 9.06603 9.62554 11.10306 Molecular weight = 313.16amu Principal moments of inertia in cm(-1) A = 0.033639 B = 0.002278 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.175788 B =12285.983795 C =12680.977280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.125 3.875 3 C -0.161 4.161 4 N -0.441 5.441 5 C -0.049 4.049 6 C -0.020 4.020 7 N -0.491 5.491 8 C 0.189 3.811 9 S -0.006 6.006 10 C -0.129 4.129 11 C 0.125 3.875 12 H 0.105 0.895 13 O -0.540 6.540 14 C 0.032 3.968 15 N -0.530 5.530 16 C 0.035 3.965 17 C 0.193 3.807 18 C -0.504 4.504 19 H 0.065 0.935 20 C 0.053 3.947 21 N -0.900 5.900 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.373 0.627 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.075 0.925 41 H 0.011 0.989 42 H 0.046 0.954 43 H -0.010 1.010 44 H 0.029 0.971 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.449 24.884 1.843 29.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.022 3.978 3 C -0.219 4.219 4 N -0.128 5.128 5 C -0.184 4.184 6 C -0.170 4.170 7 N -0.213 5.213 8 C -0.181 4.181 9 S 0.224 5.776 10 C -0.279 4.279 11 C 0.064 3.936 12 H 0.123 0.877 13 O -0.344 6.344 14 C -0.100 4.100 15 N -0.254 5.254 16 C -0.113 4.113 17 C 0.068 3.932 18 C -0.543 4.543 19 H 0.083 0.917 20 C -0.148 4.148 21 N -0.540 5.540 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.210 1.210 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.190 0.810 34 H 0.188 0.812 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.220 0.780 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.093 0.907 41 H 0.029 0.971 42 H 0.065 0.935 43 H 0.008 0.992 44 H 0.047 0.953 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.136 24.524 0.096 28.819 hybrid contribution 0.341 -0.159 1.891 1.928 sum -14.795 24.365 1.987 28.574 Atomic orbital electron populations 1.22158 0.92940 1.03473 1.03291 1.21532 0.95746 0.94167 0.86322 1.22160 1.02389 0.94015 1.03309 1.45778 1.38405 1.21893 1.06705 1.22654 1.08428 1.04612 0.82687 1.22279 1.00835 0.94223 0.99633 1.70807 1.24502 1.27401 0.98566 1.25415 1.01098 0.92815 0.98772 1.85601 1.62175 1.29048 1.00730 1.24444 1.02943 0.98041 1.02466 1.21757 0.89160 0.92060 0.90656 0.87726 1.86605 1.41321 1.69169 1.37354 1.22666 0.98025 0.95068 0.94194 1.62039 1.28103 1.06492 1.28781 1.22273 0.93225 0.96773 0.99068 1.19761 0.93404 0.85535 0.94548 1.21201 1.37443 1.02150 0.93473 0.91725 1.25003 0.96229 0.97986 0.95561 1.69972 1.45025 1.22467 1.16507 0.86431 0.78263 0.80551 0.82129 1.19619 1.21166 1.21026 0.91704 0.90275 0.91491 0.87752 0.91550 0.90270 0.91696 0.81013 0.81243 0.88425 0.88038 0.77979 0.90730 0.94937 0.90675 0.97065 0.93542 0.99179 0.95271 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 9.25 37.16 0.34 -0.53 16 2 C 0.12 0.89 3.56 -67.93 -0.24 0.65 16 3 C -0.16 -0.87 9.26 37.16 0.34 -0.52 16 4 N -0.44 -4.42 2.65 -109.82 -0.29 -4.71 16 5 C -0.05 -0.45 10.65 -16.28 -0.17 -0.62 16 6 C -0.02 -0.22 11.84 -17.80 -0.21 -0.43 16 7 N -0.49 -6.84 10.60 -13.45 -0.14 -6.99 16 8 C 0.19 2.40 7.96 -88.75 -0.71 1.70 16 9 S -0.01 -0.08 20.93 -107.50 -2.25 -2.33 16 10 C -0.13 -1.65 4.89 37.16 0.18 -1.46 16 11 C 0.13 1.81 2.97 -26.73 -0.08 1.73 16 12 H 0.11 1.56 6.26 -51.93 -0.33 1.23 16 13 O -0.54 -8.23 12.88 -35.23 -0.45 -8.69 16 14 C 0.03 0.55 4.60 -3.82 -0.02 0.53 16 15 N -0.53 -11.49 4.70 -244.37 -1.15 -12.63 16 16 C 0.04 0.70 9.17 60.07 0.55 1.25 16 17 C 0.19 5.06 4.72 -4.97 -0.02 5.04 16 18 C -0.50 -14.33 8.52 -34.44 -0.29 -14.62 16 19 H 0.06 1.83 7.10 -52.48 -0.37 1.46 16 20 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 21 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 22 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 26 H 0.06 0.32 7.96 -51.93 -0.41 -0.10 16 27 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.79 7.18 -51.93 -0.37 0.42 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.31 7.96 -51.93 -0.41 -0.10 16 33 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 36 H 0.10 1.32 8.14 -51.91 -0.42 0.90 16 37 H 0.37 4.66 9.05 45.56 0.41 5.08 16 38 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 39 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 40 H 0.07 1.59 6.86 -51.93 -0.36 1.24 16 41 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.05 0.79 6.21 -51.93 -0.32 0.47 16 43 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 44 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -33.55 380.86 -10.03 -43.57 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.77 Total: 1.29 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.42 Total: -5.88 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.85 Total: -50.59 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.45 Total: -8.69 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.25 Total: -2.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.55 -10.03 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414116148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.687 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds