Wall clock time and date at job start Fri Apr 10 2020 22:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47208 * 2 1 4 4 N 1.46504 * 109.47234 * 119.99830 * 2 1 3 5 5 C 1.37687 * 126.50080 * 300.02751 * 4 2 1 6 6 C 1.34377 * 106.95828 * 179.97438 * 5 4 2 7 7 N 1.34369 * 108.34859 * 359.74244 * 6 5 4 8 8 C 1.31269 * 109.30104 * 0.42996 * 7 6 5 9 9 S 1.76203 * 125.80394 * 179.83058 * 8 7 6 10 10 C 1.81001 * 99.99829 * 359.70004 * 9 8 7 11 11 C 1.52998 * 109.47034 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.47135 * 59.99405 * 11 10 9 13 13 O 1.42897 * 109.46674 * 299.99412 * 11 10 9 14 14 C 1.53004 * 109.46799 * 179.97438 * 11 10 9 15 15 N 1.46898 * 109.46619 * 184.99872 * 14 11 10 16 16 C 1.46901 * 111.00443 * 66.04574 * 15 14 11 17 17 C 1.46906 * 110.99820 * 189.99887 * 15 14 11 18 18 C 1.50696 * 109.47351 * 169.99890 * 17 15 14 19 19 H 1.08007 * 119.99780 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00506 * 180.02562 * 18 17 15 21 21 N 1.31515 * 119.99253 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00341 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47279 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47075 * 119.99817 * 22 20 18 25 25 H 1.48496 * 109.46942 * 240.00005 * 22 20 18 26 26 H 1.09000 * 109.47255 * 300.00092 * 1 2 3 27 27 H 1.09007 * 109.47094 * 60.00106 * 1 2 3 28 28 H 1.09001 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47255 * 239.99908 * 2 1 3 30 30 H 1.08999 * 109.47468 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47328 * 299.99680 * 3 2 1 32 32 H 1.08999 * 109.47579 * 59.99613 * 3 2 1 33 33 H 1.07999 * 126.52107 * 359.97438 * 5 4 2 34 34 H 1.08001 * 125.82995 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47418 * 59.99347 * 10 9 8 36 36 H 1.09009 * 109.46586 * 299.99805 * 10 9 8 37 37 H 0.96701 * 114.00549 * 300.00026 * 13 11 10 38 38 H 1.08994 * 109.47270 * 64.99737 * 14 11 10 39 39 H 1.08999 * 109.47017 * 304.99614 * 14 11 10 40 40 H 1.09002 * 109.47401 * 183.95136 * 16 15 14 41 41 H 1.09001 * 109.46874 * 63.95149 * 16 15 14 42 42 H 1.09004 * 109.46970 * 303.95282 * 16 15 14 43 43 H 1.08997 * 109.46995 * 289.99871 * 17 15 14 44 44 H 1.09001 * 109.46848 * 49.99877 * 17 15 14 45 45 H 0.96999 * 119.99606 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7692 -0.3391 2.5039 6 6 2.4029 -1.2359 3.2784 7 7 3.0224 -2.1214 2.4800 8 6 2.8039 -1.8017 1.2257 9 16 3.4172 -2.6680 -0.1808 10 6 4.3476 -3.9846 0.6421 11 6 4.9893 -4.8904 -0.4108 12 1 5.6643 -4.3027 -1.0329 13 8 3.9691 -5.4674 -1.2282 14 6 5.7763 -6.0029 0.2849 15 7 6.4895 -6.8008 -0.7213 16 6 7.5274 -6.0026 -1.3874 17 6 7.0620 -8.0138 -0.1221 18 6 7.5681 -8.9222 -1.2128 19 1 7.4744 -8.6276 -2.2477 20 6 8.1509 -10.1292 -0.8898 21 7 8.2655 -10.4876 0.3704 22 14 8.7790 -11.2548 -2.2418 23 1 8.5333 -10.6251 -3.5641 24 1 10.2360 -11.4785 -2.0626 25 1 8.0663 -12.5558 -2.1736 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.1770 0.4981 2.8428 34 1 2.4092 -1.2461 4.3584 35 1 3.6727 -4.5720 1.2647 36 1 5.1260 -3.5444 1.2654 37 1 3.3310 -6.0054 -0.7397 38 1 5.0887 -6.6440 0.8365 39 1 6.4952 -5.5621 0.9755 40 1 7.9923 -6.5955 -2.1750 41 1 8.2835 -5.7093 -0.6590 42 1 7.0764 -5.1105 -1.8222 43 1 7.8875 -7.7398 0.5347 44 1 6.2950 -8.5309 0.4546 45 1 8.6752 -11.3369 0.5977 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414116148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:48 Heat of formation + Delta-G solvation = -12.945948 kcal Electronic energy + Delta-G solvation = -23384.079672 eV Core-core repulsion = 19948.958233 eV Total energy + Delta-G solvation = -3435.121439 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.84140 -39.46701 -37.13765 -36.98090 -34.62701 -32.40111 -31.66681 -30.58424 -29.38816 -28.26132 -28.13358 -25.97030 -24.07330 -23.15344 -22.64871 -21.87796 -21.25123 -18.81433 -18.57520 -17.41061 -17.26431 -16.72598 -16.50499 -16.42333 -15.97618 -15.73924 -15.64111 -15.40610 -15.00822 -14.74506 -14.54841 -14.14957 -13.94511 -13.85038 -13.57925 -13.22675 -13.19540 -13.17766 -12.81918 -12.66133 -12.55706 -12.45956 -12.44447 -12.22189 -12.09434 -11.88586 -11.47610 -11.40460 -11.08149 -10.88541 -10.67319 -10.62172 -10.35745 -8.98907 -8.40499 -8.20458 -6.30161 0.20292 0.92045 1.09040 1.41335 1.42136 1.56085 1.89137 2.03830 2.40877 3.11168 3.15452 3.50249 3.54278 3.79947 3.81649 3.88994 3.90511 4.04649 4.10522 4.27462 4.39885 4.49184 4.51145 4.61242 4.63123 4.68200 4.71612 4.73331 4.75775 4.84490 4.97469 5.05199 5.08266 5.17263 5.17662 5.26708 5.30696 5.65331 5.72218 6.00746 6.04348 6.30271 6.59881 6.84182 6.87080 6.89128 7.39474 8.90877 Molecular weight = 313.16amu Principal moments of inertia in cm(-1) A = 0.033639 B = 0.002278 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.175788 B =12285.983795 C =12680.977280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.117 3.883 3 C -0.155 4.155 4 N -0.438 5.438 5 C -0.030 4.030 6 C -0.050 4.050 7 N -0.525 5.525 8 C 0.160 3.840 9 S 0.004 5.996 10 C -0.120 4.120 11 C 0.143 3.857 12 H 0.106 0.894 13 O -0.552 6.552 14 C 0.031 3.969 15 N -0.539 5.539 16 C 0.037 3.963 17 C 0.207 3.793 18 C -0.521 4.521 19 H 0.062 0.938 20 C -0.001 4.001 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.278 1.278 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.210 0.790 34 H 0.186 0.814 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.384 0.616 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.057 0.943 41 H 0.011 0.989 42 H 0.078 0.922 43 H -0.038 1.038 44 H 0.005 0.995 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.662 26.789 0.830 31.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.015 3.985 3 C -0.213 4.213 4 N -0.124 5.124 5 C -0.165 4.165 6 C -0.199 4.199 7 N -0.249 5.249 8 C -0.210 4.210 9 S 0.234 5.766 10 C -0.270 4.270 11 C 0.081 3.919 12 H 0.123 0.877 13 O -0.358 6.358 14 C -0.099 4.099 15 N -0.263 5.263 16 C -0.111 4.111 17 C 0.081 3.919 18 C -0.559 4.559 19 H 0.081 0.919 20 C -0.199 4.199 21 N -0.576 5.576 22 Si 0.795 3.205 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.204 1.204 26 H 0.093 0.907 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.227 0.773 34 H 0.203 0.797 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.233 0.767 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.030 0.970 42 H 0.097 0.903 43 H -0.020 1.020 44 H 0.023 0.977 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.369 26.453 -0.933 31.122 hybrid contribution 0.632 -0.637 2.270 2.441 sum -15.737 25.816 1.336 30.264 Atomic orbital electron populations 1.22142 0.91383 1.02884 1.04879 1.21817 0.96929 0.94803 0.84929 1.22143 1.01373 0.92876 1.04891 1.46054 1.37343 1.21059 1.07916 1.23230 1.06902 1.04433 0.81942 1.22724 1.01775 0.94745 1.00671 1.70720 1.25677 1.28915 0.99544 1.25386 1.02788 0.94307 0.98481 1.85404 1.62092 1.28544 1.00532 1.24188 1.02879 0.98192 1.01717 1.21491 0.88817 0.91015 0.90542 0.87650 1.86571 1.41640 1.69527 1.38082 1.22748 0.97919 0.95541 0.93733 1.61941 1.28311 1.06366 1.29664 1.22273 0.93065 0.97279 0.98454 1.19413 0.91668 0.87322 0.93516 1.21491 1.37760 1.02922 0.93742 0.91948 1.25933 0.96276 0.99615 0.98028 1.70094 1.45739 1.23144 1.18625 0.85313 0.77789 0.78256 0.79135 1.18766 1.20378 1.20369 0.90668 0.88154 0.93121 0.88615 0.93081 0.88146 0.90675 0.77298 0.79686 0.88688 0.88373 0.76672 0.90966 0.94630 0.92394 0.97014 0.90303 1.02023 0.97715 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.25 71.98 0.67 -0.63 16 2 C 0.12 1.43 3.56 44.99 0.16 1.59 16 3 C -0.16 -1.27 9.26 71.98 0.67 -0.60 16 4 N -0.44 -8.12 2.65 -501.37 -1.33 -9.45 16 5 C -0.03 -0.48 10.65 82.89 0.88 0.41 16 6 C -0.05 -1.07 11.84 83.42 0.99 -0.08 16 7 N -0.53 -14.59 10.60 -196.46 -2.08 -16.67 16 8 C 0.16 3.99 7.96 179.69 1.43 5.43 16 9 S 0.00 0.09 20.93 -56.49 -1.18 -1.09 16 10 C -0.12 -3.04 4.89 71.98 0.35 -2.69 16 11 C 0.14 4.06 2.97 30.60 0.09 4.15 16 12 H 0.11 3.00 6.26 -2.39 -0.01 2.99 16 13 O -0.55 -16.42 12.88 -148.98 -1.92 -18.34 16 14 C 0.03 1.09 4.60 86.30 0.40 1.49 16 15 N -0.54 -23.66 4.70 -927.04 -4.36 -28.02 16 16 C 0.04 1.47 9.17 127.69 1.17 2.65 16 17 C 0.21 11.26 4.72 85.55 0.40 11.66 16 18 C -0.52 -30.13 8.52 25.60 0.22 -29.91 16 19 H 0.06 3.57 7.10 -2.91 -0.02 3.55 16 20 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 21 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 22 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 23 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 26 H 0.07 0.48 7.96 -2.39 -0.02 0.47 16 27 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 1.34 7.18 -2.39 -0.02 1.32 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.47 7.96 -2.39 -0.02 0.45 16 33 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.09 2.46 8.14 -2.40 -0.02 2.44 16 36 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.38 9.43 9.05 -74.06 -0.67 8.76 16 38 H 0.07 2.54 7.93 -2.39 -0.02 2.53 16 39 H 0.04 1.24 8.12 -2.39 -0.02 1.22 16 40 H 0.06 2.46 6.86 -2.39 -0.02 2.44 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.08 2.57 6.21 -2.38 -0.01 2.56 16 43 H -0.04 -2.23 8.12 -2.39 -0.02 -2.25 16 44 H 0.00 0.28 7.93 -2.39 -0.02 0.26 16 45 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -73.26 380.86 -0.37 -73.63 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.30 Total: 15.79 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 7.89 Total: -6.12 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -7.49 Total: -110.95 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -1.92 Total: -18.34 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -1.18 Total: -1.09 kcal Total: -73.26 -0.37 -73.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414116148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.685 kcal (2) G-P(sol) polarization free energy of solvation -73.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds