Wall clock time and date at job start Fri Apr 10 2020 22:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47099 * 2 1 4 4 N 1.46499 * 109.47275 * 120.00164 * 2 1 3 5 5 C 1.37692 * 126.49993 * 300.02669 * 4 2 1 6 6 C 1.34388 * 106.95501 * 179.97438 * 5 4 2 7 7 N 1.34362 * 108.34536 * 359.74478 * 6 5 4 8 8 C 1.31263 * 109.30728 * 0.42914 * 7 6 5 9 9 S 1.76195 * 125.80492 * 179.83640 * 8 7 6 10 10 C 1.81002 * 100.00198 * 359.69266 * 9 8 7 11 11 C 1.52992 * 109.47744 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.46862 * 305.00581 * 11 10 9 13 13 O 1.42905 * 109.46980 * 64.99709 * 11 10 9 14 14 C 1.52997 * 109.47482 * 185.00016 * 11 10 9 15 15 N 1.46899 * 109.47254 * 179.97438 * 14 11 10 16 16 C 1.46902 * 111.00255 * 293.95367 * 15 14 11 17 17 C 1.46901 * 111.00103 * 169.99667 * 15 14 11 18 18 C 1.50696 * 109.47399 * 190.00043 * 17 15 14 19 19 H 1.08005 * 119.99725 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00189 * 180.02562 * 18 17 15 21 21 N 1.31513 * 119.99790 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00051 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47121 * 59.99761 * 22 20 18 24 24 H 1.48496 * 109.46967 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46792 * 299.99995 * 22 20 18 26 26 H 1.08997 * 109.47003 * 299.99716 * 1 2 3 27 27 H 1.08998 * 109.46740 * 60.00085 * 1 2 3 28 28 H 1.08997 * 109.46857 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47003 * 240.00284 * 2 1 3 30 30 H 1.09001 * 109.47283 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47190 * 300.00385 * 3 2 1 32 32 H 1.09008 * 109.46702 * 59.99831 * 3 2 1 33 33 H 1.07993 * 126.52025 * 359.97438 * 5 4 2 34 34 H 1.07999 * 125.82583 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.46852 * 59.99431 * 10 9 8 36 36 H 1.09004 * 109.46735 * 300.00563 * 10 9 8 37 37 H 0.96696 * 114.00036 * 60.00352 * 13 11 10 38 38 H 1.09002 * 109.47153 * 59.99783 * 14 11 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 14 11 10 40 40 H 1.09005 * 109.46528 * 59.99744 * 16 15 14 41 41 H 1.09000 * 109.46785 * 179.97438 * 16 15 14 42 42 H 1.08997 * 109.47044 * 300.00388 * 16 15 14 43 43 H 1.08998 * 109.47407 * 310.00536 * 17 15 14 44 44 H 1.09007 * 109.46608 * 69.99971 * 17 15 14 45 45 H 0.96994 * 119.99598 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7692 -0.3392 2.5039 6 6 2.4030 -1.2361 3.2783 7 7 3.0225 -2.1215 2.4798 8 6 2.8040 -1.8017 1.2256 9 16 3.4172 -2.6680 -0.1809 10 6 4.3477 -3.9846 0.6418 11 6 4.9894 -4.8903 -0.4110 12 1 4.2205 -5.2601 -1.0894 13 8 5.9600 -4.1470 -1.1510 14 6 5.6711 -6.0727 0.2804 15 7 6.2867 -6.9426 -0.7306 16 6 5.2638 -7.5740 -1.5751 17 6 7.1475 -7.9534 -0.1018 18 6 7.9473 -8.6630 -1.1636 19 1 7.8284 -8.3902 -2.2019 20 6 8.8309 -9.6606 -0.8098 21 7 8.9760 -9.9924 0.4545 22 14 9.8229 -10.5398 -2.1261 23 1 10.6652 -9.5551 -2.8515 24 1 10.6929 -11.5615 -1.4903 25 1 8.8994 -11.2011 -3.0827 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.1771 0.4980 2.8428 34 1 2.4093 -1.2464 4.3583 35 1 3.6728 -4.5720 1.2644 36 1 5.1261 -3.5444 1.2651 37 1 6.6759 -3.7870 -0.6099 38 1 4.9307 -6.6396 0.8448 39 1 6.4399 -5.7028 0.9587 40 1 4.6854 -6.8024 -2.0833 41 1 5.7470 -8.2121 -2.3151 42 1 4.6003 -8.1754 -0.9538 43 1 7.8255 -7.4675 0.5999 44 1 6.5295 -8.6759 0.4314 45 1 9.5973 -10.6945 0.7033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414116150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:50 Heat of formation + Delta-G solvation = 9.639424 kcal Electronic energy + Delta-G solvation = -23383.424987 eV Core-core repulsion = 19949.282923 eV Total energy + Delta-G solvation = -3434.142064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.05713 -38.04440 -36.40083 -35.48711 -32.51960 -31.25172 -30.84188 -29.76977 -27.85997 -27.44326 -26.58751 -24.21750 -23.31861 -21.99483 -21.50459 -20.49220 -20.21693 -18.07596 -16.64041 -16.10929 -16.02298 -15.64801 -15.41506 -15.07410 -14.90704 -14.54422 -14.32953 -14.17415 -13.98861 -13.76506 -13.53379 -13.02254 -12.87213 -12.74209 -12.66045 -12.31374 -11.96263 -11.88651 -11.69658 -11.37971 -11.29296 -10.87430 -10.86839 -10.72043 -10.55675 -10.30932 -10.18379 -10.04681 -9.88819 -9.66442 -9.51458 -9.13375 -8.41006 -7.51523 -7.19907 -6.00188 -4.01264 1.12227 1.70721 2.06626 2.57436 2.88692 3.36211 3.39793 3.43317 4.05453 4.36072 4.40584 4.46089 4.56187 4.56992 4.69704 4.95063 5.01269 5.02244 5.09016 5.13681 5.21252 5.27839 5.36435 5.37344 5.41349 5.53345 5.58196 5.61154 5.72110 5.96159 6.05965 6.20815 6.26435 6.37936 6.50047 6.71652 6.78308 7.28560 7.34652 7.71549 7.81357 7.93407 8.11081 8.21268 8.56501 9.06327 9.62724 11.10738 Molecular weight = 313.16amu Principal moments of inertia in cm(-1) A = 0.033556 B = 0.002280 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.228441 B =12276.865807 C =12678.607261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.125 3.875 3 C -0.161 4.161 4 N -0.441 5.441 5 C -0.049 4.049 6 C -0.020 4.020 7 N -0.490 5.490 8 C 0.190 3.810 9 S -0.010 6.010 10 C -0.128 4.128 11 C 0.126 3.874 12 H 0.103 0.897 13 O -0.539 6.539 14 C 0.031 3.969 15 N -0.529 5.529 16 C 0.035 3.965 17 C 0.193 3.807 18 C -0.506 4.506 19 H 0.064 0.936 20 C 0.054 3.946 21 N -0.900 5.900 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.374 0.626 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.009 0.991 43 H 0.029 0.971 44 H -0.010 1.010 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.995 23.036 1.568 29.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.022 3.978 3 C -0.219 4.219 4 N -0.128 5.128 5 C -0.184 4.184 6 C -0.170 4.170 7 N -0.213 5.213 8 C -0.180 4.180 9 S 0.221 5.779 10 C -0.278 4.278 11 C 0.065 3.935 12 H 0.121 0.879 13 O -0.344 6.344 14 C -0.100 4.100 15 N -0.253 5.253 16 C -0.113 4.113 17 C 0.068 3.932 18 C -0.544 4.544 19 H 0.082 0.918 20 C -0.147 4.147 21 N -0.540 5.540 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.190 0.810 34 H 0.188 0.812 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.221 0.779 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.028 0.972 43 H 0.047 0.953 44 H 0.008 0.992 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.721 22.662 -0.140 28.768 hybrid contribution -0.026 -0.398 1.809 1.853 sum -17.746 22.263 1.669 28.520 Atomic orbital electron populations 1.22159 0.92978 1.03417 1.03311 1.21533 0.95689 0.94226 0.86323 1.22160 1.02452 0.93964 1.03289 1.45779 1.38402 1.21898 1.06710 1.22657 1.08437 1.04606 0.82679 1.22280 1.00806 0.94232 0.99635 1.70800 1.24479 1.27416 0.98556 1.25380 1.01024 0.92874 0.98733 1.85570 1.60885 1.30460 1.00954 1.24433 1.02919 0.98003 1.02415 1.21710 0.90744 0.89307 0.91786 0.87922 1.86597 1.38241 1.71669 1.37856 1.22668 0.98044 0.94625 0.94659 1.62022 1.19338 1.22974 1.20989 1.22269 0.93828 0.97471 0.97780 1.19747 0.90916 0.87966 0.94572 1.21124 1.22096 1.17336 0.93879 0.91824 1.24997 0.97129 0.97099 0.95486 1.69950 1.37067 1.31084 1.15869 0.86543 0.79983 0.79207 0.81572 1.20126 1.21413 1.20293 0.91686 0.90273 0.91553 0.87763 0.91487 0.90276 0.91707 0.81010 0.81232 0.88018 0.88393 0.77920 0.94935 0.90757 0.93489 0.90586 0.97210 0.95290 0.99213 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.26 37.16 0.34 -0.52 16 2 C 0.12 0.89 3.56 -67.93 -0.24 0.65 16 3 C -0.16 -0.88 9.26 37.16 0.34 -0.53 16 4 N -0.44 -4.43 2.65 -109.82 -0.29 -4.72 16 5 C -0.05 -0.45 10.65 -16.28 -0.17 -0.62 16 6 C -0.02 -0.22 11.84 -17.80 -0.21 -0.43 16 7 N -0.49 -6.85 10.60 -13.45 -0.14 -6.99 16 8 C 0.19 2.42 7.96 -88.75 -0.71 1.71 16 9 S -0.01 -0.12 21.07 -107.50 -2.27 -2.38 16 10 C -0.13 -1.63 4.86 37.15 0.18 -1.45 16 11 C 0.13 1.83 2.83 -26.74 -0.08 1.75 16 12 H 0.10 1.52 6.55 -51.93 -0.34 1.18 16 13 O -0.54 -8.29 12.95 -35.23 -0.46 -8.74 16 14 C 0.03 0.54 4.62 -3.83 -0.02 0.52 16 15 N -0.53 -11.46 4.62 -244.37 -1.13 -12.59 16 16 C 0.04 0.70 9.14 60.07 0.55 1.25 16 17 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 18 C -0.51 -14.37 8.46 -34.44 -0.29 -14.66 16 19 H 0.06 1.80 7.12 -52.48 -0.37 1.42 16 20 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 22 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.06 0.31 7.96 -51.93 -0.41 -0.10 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.79 7.18 -51.93 -0.37 0.42 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.32 7.96 -51.92 -0.41 -0.10 16 33 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.10 1.33 8.14 -51.92 -0.42 0.90 16 36 H 0.10 1.26 8.14 -51.91 -0.42 0.83 16 37 H 0.37 4.76 9.05 45.56 0.41 5.17 16 38 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 39 H 0.07 1.28 7.93 -51.93 -0.41 0.86 16 40 H 0.05 0.81 6.47 -51.93 -0.34 0.47 16 41 H 0.08 1.62 6.76 -51.93 -0.35 1.27 16 42 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 44 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -33.43 381.24 -10.04 -43.47 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.80 Total: 1.43 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -0.42 Total: -5.84 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.83 Total: -50.54 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.46 Total: -8.74 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.27 Total: -2.38 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.43 -10.04 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414116150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.106 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds