Wall clock time and date at job start Fri Apr 10 2020 22:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47099 * 2 1 4 4 N 1.46499 * 109.47275 * 120.00164 * 2 1 3 5 5 C 1.37692 * 126.49993 * 300.02669 * 4 2 1 6 6 C 1.34388 * 106.95501 * 179.97438 * 5 4 2 7 7 N 1.34362 * 108.34536 * 359.74478 * 6 5 4 8 8 C 1.31263 * 109.30728 * 0.42914 * 7 6 5 9 9 S 1.76195 * 125.80492 * 179.83640 * 8 7 6 10 10 C 1.81002 * 100.00198 * 359.69266 * 9 8 7 11 11 C 1.52992 * 109.47744 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.46862 * 305.00581 * 11 10 9 13 13 O 1.42905 * 109.46980 * 64.99709 * 11 10 9 14 14 C 1.52997 * 109.47482 * 185.00016 * 11 10 9 15 15 N 1.46899 * 109.47254 * 179.97438 * 14 11 10 16 16 C 1.46902 * 111.00255 * 293.95367 * 15 14 11 17 17 C 1.46901 * 111.00103 * 169.99667 * 15 14 11 18 18 C 1.50696 * 109.47399 * 190.00043 * 17 15 14 19 19 H 1.08005 * 119.99725 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00189 * 180.02562 * 18 17 15 21 21 N 1.31513 * 119.99790 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00051 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47121 * 59.99761 * 22 20 18 24 24 H 1.48496 * 109.46967 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46792 * 299.99995 * 22 20 18 26 26 H 1.08997 * 109.47003 * 299.99716 * 1 2 3 27 27 H 1.08998 * 109.46740 * 60.00085 * 1 2 3 28 28 H 1.08997 * 109.46857 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47003 * 240.00284 * 2 1 3 30 30 H 1.09001 * 109.47283 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47190 * 300.00385 * 3 2 1 32 32 H 1.09008 * 109.46702 * 59.99831 * 3 2 1 33 33 H 1.07993 * 126.52025 * 359.97438 * 5 4 2 34 34 H 1.07999 * 125.82583 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.46852 * 59.99431 * 10 9 8 36 36 H 1.09004 * 109.46735 * 300.00563 * 10 9 8 37 37 H 0.96696 * 114.00036 * 60.00352 * 13 11 10 38 38 H 1.09002 * 109.47153 * 59.99783 * 14 11 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 14 11 10 40 40 H 1.09005 * 109.46528 * 59.99744 * 16 15 14 41 41 H 1.09000 * 109.46785 * 179.97438 * 16 15 14 42 42 H 1.08997 * 109.47044 * 300.00388 * 16 15 14 43 43 H 1.08998 * 109.47407 * 310.00536 * 17 15 14 44 44 H 1.09007 * 109.46608 * 69.99971 * 17 15 14 45 45 H 0.96994 * 119.99598 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7692 -0.3392 2.5039 6 6 2.4030 -1.2361 3.2783 7 7 3.0225 -2.1215 2.4798 8 6 2.8040 -1.8017 1.2256 9 16 3.4172 -2.6680 -0.1809 10 6 4.3477 -3.9846 0.6418 11 6 4.9894 -4.8903 -0.4110 12 1 4.2205 -5.2601 -1.0894 13 8 5.9600 -4.1470 -1.1510 14 6 5.6711 -6.0727 0.2804 15 7 6.2867 -6.9426 -0.7306 16 6 5.2638 -7.5740 -1.5751 17 6 7.1475 -7.9534 -0.1018 18 6 7.9473 -8.6630 -1.1636 19 1 7.8284 -8.3902 -2.2019 20 6 8.8309 -9.6606 -0.8098 21 7 8.9760 -9.9924 0.4545 22 14 9.8229 -10.5398 -2.1261 23 1 10.6652 -9.5551 -2.8515 24 1 10.6929 -11.5615 -1.4903 25 1 8.8994 -11.2011 -3.0827 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.1771 0.4980 2.8428 34 1 2.4093 -1.2464 4.3583 35 1 3.6728 -4.5720 1.2644 36 1 5.1261 -3.5444 1.2651 37 1 6.6759 -3.7870 -0.6099 38 1 4.9307 -6.6396 0.8448 39 1 6.4399 -5.7028 0.9587 40 1 4.6854 -6.8024 -2.0833 41 1 5.7470 -8.2121 -2.3151 42 1 4.6003 -8.1754 -0.9538 43 1 7.8255 -7.4675 0.5999 44 1 6.5295 -8.6759 0.4314 45 1 9.5973 -10.6945 0.7033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414116150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:50 Heat of formation + Delta-G solvation = -13.239024 kcal Electronic energy + Delta-G solvation = -23384.417071 eV Core-core repulsion = 19949.282923 eV Total energy + Delta-G solvation = -3435.134148 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.84405 -39.45901 -37.12038 -36.97875 -34.61682 -32.40670 -31.66908 -30.58804 -29.38800 -28.26254 -28.11678 -25.96647 -24.07605 -23.15424 -22.64853 -21.86540 -21.25144 -18.81704 -18.56599 -17.39949 -17.25471 -16.74737 -16.50306 -16.42429 -15.94264 -15.72879 -15.64249 -15.42425 -15.00937 -14.74376 -14.53501 -14.14297 -13.93863 -13.83899 -13.60489 -13.22511 -13.19692 -13.17614 -12.82332 -12.66499 -12.54549 -12.46095 -12.41448 -12.22676 -12.09967 -11.88191 -11.50002 -11.41041 -11.08291 -10.88190 -10.67511 -10.60632 -10.36045 -8.98590 -8.41000 -8.19755 -6.29673 0.20017 0.91802 1.08385 1.41835 1.45337 1.53199 1.88949 2.03721 2.41198 3.11549 3.15426 3.50789 3.54123 3.80852 3.81499 3.88836 3.91734 4.04426 4.09189 4.28508 4.39812 4.49086 4.52010 4.61146 4.62650 4.68068 4.72562 4.73239 4.75667 4.84353 4.97638 5.05059 5.07987 5.17548 5.18018 5.26541 5.30986 5.65128 5.72065 6.00553 6.04745 6.30897 6.60126 6.84667 6.87372 6.88987 7.39814 8.91107 Molecular weight = 313.16amu Principal moments of inertia in cm(-1) A = 0.033556 B = 0.002280 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.228441 B =12276.865807 C =12678.607261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.117 3.883 3 C -0.155 4.155 4 N -0.438 5.438 5 C -0.029 4.029 6 C -0.050 4.050 7 N -0.525 5.525 8 C 0.161 3.839 9 S 0.001 5.999 10 C -0.119 4.119 11 C 0.144 3.856 12 H 0.105 0.895 13 O -0.551 6.551 14 C 0.031 3.969 15 N -0.537 5.537 16 C 0.038 3.962 17 C 0.207 3.793 18 C -0.523 4.523 19 H 0.063 0.937 20 C 0.000 4.000 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.268 1.268 24 H -0.283 1.283 25 H -0.267 1.267 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.210 0.790 34 H 0.186 0.814 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.384 0.616 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.012 0.988 43 H 0.005 0.995 44 H -0.038 1.038 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.274 24.905 0.520 31.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.015 3.985 3 C -0.213 4.213 4 N -0.124 5.124 5 C -0.165 4.165 6 C -0.199 4.199 7 N -0.248 5.248 8 C -0.209 4.209 9 S 0.231 5.769 10 C -0.269 4.269 11 C 0.082 3.918 12 H 0.122 0.878 13 O -0.357 6.357 14 C -0.100 4.100 15 N -0.261 5.261 16 C -0.110 4.110 17 C 0.081 3.919 18 C -0.561 4.561 19 H 0.081 0.919 20 C -0.198 4.198 21 N -0.576 5.576 22 Si 0.794 3.206 23 H -0.193 1.193 24 H -0.208 1.208 25 H -0.192 1.192 26 H 0.093 0.907 27 H 0.119 0.881 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.227 0.773 34 H 0.203 0.797 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.233 0.767 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.023 0.977 44 H -0.021 1.021 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.017 24.557 -1.207 31.083 hybrid contribution 0.286 -0.861 2.199 2.379 sum -18.731 23.696 0.992 30.221 Atomic orbital electron populations 1.22142 0.91342 1.02892 1.04897 1.21819 0.96933 0.94806 0.84929 1.22144 1.01367 0.92896 1.04883 1.46056 1.37335 1.21060 1.07925 1.23235 1.06907 1.04422 0.81931 1.22727 1.01745 0.94756 1.00674 1.70712 1.25648 1.28938 0.99535 1.25349 1.02729 0.94374 0.98439 1.85369 1.60778 1.29984 1.00758 1.24177 1.02858 0.98151 1.01679 1.21453 0.90290 0.88338 0.91708 0.87753 1.86563 1.38861 1.71665 1.38649 1.22750 0.98101 0.94993 0.94140 1.61927 1.20444 1.21886 1.21872 1.22263 0.93377 0.98207 0.97197 1.19401 0.90765 0.88067 0.93646 1.21433 1.22614 1.17875 0.94191 0.91926 1.25929 0.98211 0.97855 0.97793 1.70079 1.37824 1.31703 1.17958 0.85425 0.78419 0.78016 0.78696 1.19342 1.20843 1.19203 0.90665 0.88139 0.93090 0.88622 0.93123 0.88149 0.90667 0.77285 0.79670 0.88377 0.88654 0.76686 0.94636 0.90998 0.90439 0.92399 0.96946 0.97728 1.02079 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.26 71.98 0.67 -0.60 16 2 C 0.12 1.43 3.56 44.99 0.16 1.59 16 3 C -0.16 -1.30 9.26 71.98 0.67 -0.63 16 4 N -0.44 -8.14 2.65 -501.37 -1.33 -9.47 16 5 C -0.03 -0.48 10.65 82.89 0.88 0.41 16 6 C -0.05 -1.07 11.84 83.43 0.99 -0.08 16 7 N -0.53 -14.61 10.60 -196.47 -2.08 -16.69 16 8 C 0.16 4.02 7.96 179.70 1.43 5.45 16 9 S 0.00 0.01 21.07 -56.49 -1.19 -1.18 16 10 C -0.12 -3.02 4.86 71.98 0.35 -2.67 16 11 C 0.14 4.09 2.83 30.59 0.09 4.18 16 12 H 0.10 2.96 6.55 -2.39 -0.02 2.95 16 13 O -0.55 -16.53 12.95 -148.98 -1.93 -18.46 16 14 C 0.03 1.08 4.62 86.30 0.40 1.48 16 15 N -0.54 -23.56 4.62 -927.04 -4.28 -27.84 16 16 C 0.04 1.49 9.14 127.69 1.17 2.66 16 17 C 0.21 11.27 4.72 85.56 0.40 11.68 16 18 C -0.52 -30.21 8.46 25.60 0.22 -29.99 16 19 H 0.06 3.56 7.12 -2.91 -0.02 3.54 16 20 C 0.00 0.00 5.46 84.66 0.46 0.46 16 21 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 22 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H 0.07 0.47 7.96 -2.39 -0.02 0.46 16 27 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 1.34 7.18 -2.39 -0.02 1.32 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.48 7.96 -2.38 -0.02 0.47 16 33 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.19 3.05 8.06 -2.91 -0.02 3.02 16 35 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.38 9.62 9.05 -74.06 -0.67 8.95 16 38 H 0.04 1.23 8.12 -2.39 -0.02 1.21 16 39 H 0.07 2.53 7.93 -2.39 -0.02 2.52 16 40 H 0.08 2.57 6.47 -2.38 -0.02 2.55 16 41 H 0.06 2.47 6.76 -2.39 -0.02 2.46 16 42 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.00 0.27 7.93 -2.39 -0.02 0.25 16 44 H -0.04 -2.26 8.12 -2.38 -0.02 -2.28 16 45 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -72.99 381.24 -0.33 -73.32 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.30 Total: 16.21 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 7.88 Total: -6.07 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -7.41 Total: -110.81 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -1.93 Total: -18.46 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -1.19 Total: -1.18 kcal Total: -72.99 -0.33 -73.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414116150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.077 kcal (2) G-P(sol) polarization free energy of solvation -72.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds