Wall clock time and date at job start Fri Apr 10 2020 22:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 5 5 C 1.46901 * 110.99793 * 85.00144 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99531 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00000 * 6 5 4 9 9 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 10 10 H 1.07996 * 119.99928 * 359.97438 * 9 6 5 11 11 C 1.37880 * 119.99611 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00327 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99743 * 179.97438 * 11 9 6 14 14 H 1.48506 * 109.46828 * 90.00241 * 13 11 9 15 15 H 1.48494 * 109.47178 * 209.99936 * 13 11 9 16 16 H 1.48500 * 109.47075 * 330.00183 * 13 11 9 17 17 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 18 18 C 1.38268 * 119.94376 * 79.72389 * 17 2 1 19 19 C 1.38148 * 120.05394 * 179.72958 * 18 17 2 20 20 C 1.38736 * 119.93995 * 0.54908 * 19 18 17 21 21 O 1.35904 * 120.04920 * 179.75207 * 20 19 18 22 22 C 1.42896 * 117.00364 * 359.97100 * 21 20 19 23 23 F 1.39897 * 109.47202 * 300.00640 * 22 21 20 24 24 F 1.39905 * 109.46980 * 60.00217 * 22 21 20 25 25 C 1.38733 * 119.89315 * 359.72562 * 20 19 18 26 26 C 1.38147 * 119.94107 * 359.97438 * 25 20 19 27 27 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 28 28 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 29 29 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 30 30 H 1.00898 * 110.99995 * 208.95221 * 4 2 1 31 31 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 32 32 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 33 33 H 1.09000 * 109.46986 * 60.00203 * 7 6 5 34 34 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 36 36 H 1.08992 * 109.47554 * 59.99639 * 8 6 5 37 37 H 1.09004 * 109.47108 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.46870 * 299.99783 * 8 6 5 39 39 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 40 40 H 1.07995 * 119.97269 * 0.02562 * 18 17 2 41 41 H 1.07993 * 120.03000 * 180.26976 * 19 18 17 42 42 H 1.08999 * 109.47098 * 179.97438 * 22 21 20 43 43 H 1.07997 * 120.02839 * 179.97438 * 25 20 19 44 44 H 1.07996 * 119.97189 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5949 -0.5333 -3.5745 7 6 3.9920 -1.0864 -3.2863 8 6 1.6450 -1.6889 -3.8952 9 6 2.6599 0.4057 -4.7515 10 1 2.3648 1.4381 -4.6356 11 6 3.0962 -0.0533 -5.9762 12 7 3.4561 -1.3103 -6.1172 13 14 3.1761 1.1104 -7.4353 14 1 4.5123 1.7568 -7.4803 15 1 2.9529 0.3475 -8.6897 16 1 2.1268 2.1518 -7.2959 17 6 2.0324 -0.7104 1.2304 18 6 2.0610 -2.0923 1.2662 19 6 2.5263 -2.7459 2.3908 20 6 2.9545 -2.0145 3.4892 21 8 3.4080 -2.6552 4.5986 22 6 3.4157 -4.0837 4.5653 23 9 2.1127 -4.5526 4.3666 24 9 4.2335 -4.5213 3.5179 25 6 2.9195 -0.6280 3.4530 26 6 2.4590 0.0208 2.3236 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.9172 -1.1205 -1.0288 31 1 2.7588 1.0462 -2.1183 32 1 1.0870 0.6163 -2.5525 33 1 3.9455 -1.7653 -2.4349 34 1 4.3574 -1.6244 -4.1609 35 1 4.6687 -0.2630 -3.0577 36 1 0.6497 -1.2950 -4.1005 37 1 2.0099 -2.2271 -4.7701 38 1 1.5984 -2.3679 -3.0438 39 1 3.7634 -1.6332 -6.9788 40 1 1.7237 -2.6612 0.4124 41 1 2.5525 -3.8252 2.4167 42 1 3.8001 -4.4672 5.5104 43 1 3.2518 -0.0565 4.3069 44 1 2.4319 1.1000 2.2947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414171384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:02 Heat of formation + Delta-G solvation = -126.723157 kcal Electronic energy + Delta-G solvation = -26340.477331 eV Core-core repulsion = 22314.289004 eV Total energy + Delta-G solvation = -4026.188327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.61963 -47.61131 -40.20489 -38.33232 -36.70736 -34.53185 -31.68512 -31.10589 -29.77978 -28.47312 -26.36054 -25.53051 -25.20458 -24.20550 -23.26375 -22.40249 -20.27733 -19.19804 -18.59282 -18.22503 -18.18079 -16.47123 -16.22828 -15.60333 -15.24303 -14.85911 -14.72350 -14.44159 -14.21879 -14.10585 -13.93725 -13.76674 -13.48067 -13.45023 -12.93506 -12.89497 -12.59982 -12.49016 -12.02874 -11.88229 -11.61926 -11.44987 -11.14882 -10.99743 -10.93693 -10.81736 -10.59876 -10.41814 -10.13224 -10.03620 -9.36032 -9.07468 -9.05858 -8.60231 -8.34690 -8.27328 -7.71829 -5.89430 -3.99798 1.21696 1.29943 2.30276 3.18937 3.32198 3.39329 3.42231 3.62956 3.98884 4.34150 4.44355 4.64733 4.73567 4.84923 4.87151 5.18668 5.33547 5.36026 5.43742 5.62232 5.68707 5.93878 5.97496 6.08559 6.17803 6.25628 6.37703 6.40400 6.45579 6.50522 6.65072 6.75356 6.92335 6.98244 7.10498 7.19917 7.40267 7.49931 7.75710 7.78135 7.85227 7.99074 8.23676 8.36811 8.57905 9.01718 9.65141 11.11018 Molecular weight = 313.16amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.002814 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.933611 B = 9947.132963 C =10498.566626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.122 3.878 3 H 0.046 0.954 4 N -0.680 5.680 5 C 0.076 3.924 6 C 0.070 3.930 7 C -0.132 4.132 8 C -0.118 4.118 9 C -0.507 4.507 10 H 0.051 0.949 11 C 0.065 3.935 12 N -0.884 5.884 13 Si 0.888 3.112 14 H -0.283 1.283 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.102 4.102 18 C -0.060 4.060 19 C -0.189 4.189 20 C 0.094 3.906 21 O -0.324 6.324 22 C 0.411 3.589 23 F -0.199 7.199 24 F -0.198 7.198 25 C -0.136 4.136 26 C -0.083 4.083 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.339 0.661 31 H 0.013 0.987 32 H 0.057 0.943 33 H 0.010 0.990 34 H 0.083 0.917 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.020 0.980 39 H 0.258 0.742 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.179 0.821 43 H 0.131 0.869 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 -3.511 22.516 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.012 3.988 3 H 0.064 0.936 4 N -0.313 5.313 5 C -0.053 4.053 6 C 0.069 3.931 7 C -0.190 4.190 8 C -0.176 4.176 9 C -0.545 4.545 10 H 0.070 0.930 11 C -0.136 4.136 12 N -0.523 5.523 13 Si 0.716 3.284 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.102 4.102 18 C -0.079 4.079 19 C -0.208 4.208 20 C 0.051 3.949 21 O -0.242 6.242 22 C 0.321 3.679 23 F -0.181 7.181 24 F -0.179 7.179 25 C -0.155 4.155 26 C -0.102 4.102 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.159 0.841 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.158 0.842 41 H 0.149 0.851 42 H 0.196 0.804 43 H 0.149 0.851 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.622 -3.823 22.326 22.709 hybrid contribution 0.819 0.940 -0.791 1.477 sum -0.802 -2.882 21.535 21.742 Atomic orbital electron populations 1.21754 0.94018 1.02318 1.00880 1.20429 0.95895 0.95104 0.87392 0.93615 1.60764 1.33549 1.33682 1.03268 1.22204 0.99243 0.93067 0.90755 1.18083 0.91786 0.93164 0.90072 1.21833 0.98804 0.98399 0.99946 1.21628 0.97299 0.98382 1.00278 1.21116 1.43491 0.95823 0.94116 0.93030 1.24882 0.95287 0.94964 0.98427 1.69832 1.44595 1.13926 1.23966 0.86669 0.78228 0.81044 0.82445 1.20897 1.21316 1.20077 1.20126 1.00061 0.93971 0.96071 1.20978 0.95753 0.94012 0.97133 1.21554 1.04570 1.00453 0.94220 1.18859 0.98003 0.92365 0.85652 1.86577 1.80647 1.18721 1.38260 1.23311 0.74985 0.78857 0.90724 1.93102 1.40315 1.88468 1.96214 1.93118 1.72794 1.89398 1.62623 1.20327 1.04768 0.90544 0.99863 1.20891 0.97373 0.99923 0.91999 0.93298 0.92171 0.92072 0.84073 0.96878 0.92435 0.97093 0.89848 0.96285 0.96331 0.90813 0.96132 0.93213 0.84166 0.85088 0.80445 0.85146 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.39 37.16 0.35 -1.46 16 2 C 0.12 1.78 2.81 -68.86 -0.19 1.59 16 3 H 0.05 0.67 7.66 -51.93 -0.40 0.28 16 4 N -0.68 -11.91 4.91 -107.95 -0.53 -12.44 16 5 C 0.08 1.56 4.38 -3.82 -0.02 1.54 16 6 C 0.07 1.67 0.57 -155.66 -0.09 1.59 16 7 C -0.13 -3.14 7.92 37.16 0.29 -2.85 16 8 C -0.12 -2.87 8.10 37.16 0.30 -2.57 16 9 C -0.51 -13.65 8.01 -34.44 -0.28 -13.93 16 10 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 11 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 12 N -0.88 -24.57 9.35 55.43 0.52 -24.05 16 13 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 C -0.10 -1.37 4.71 -104.60 -0.49 -1.86 16 18 C -0.06 -0.83 9.00 -39.60 -0.36 -1.19 16 19 C -0.19 -2.46 8.26 -39.43 -0.33 -2.78 16 20 C 0.09 1.15 6.48 -39.21 -0.25 0.90 16 21 O -0.32 -3.35 10.43 -19.44 -0.20 -3.56 16 22 C 0.41 3.19 5.98 101.05 0.60 3.79 16 23 F -0.20 -1.90 15.58 2.25 0.04 -1.86 16 24 F -0.20 -1.97 15.58 2.25 0.04 -1.94 16 25 C -0.14 -1.56 9.99 -39.43 -0.39 -1.95 16 26 C -0.08 -0.99 9.66 -39.60 -0.38 -1.37 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.87 7.45 -51.93 -0.39 0.48 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.34 6.08 6.04 -39.29 -0.24 5.84 16 31 H 0.01 0.27 8.06 -51.93 -0.42 -0.14 16 32 H 0.06 1.21 7.44 -51.93 -0.39 0.82 16 33 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 34 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 1.97 6.07 -51.93 -0.32 1.66 16 38 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.14 1.98 7.72 -52.49 -0.41 1.58 16 41 H 0.13 1.63 5.10 -52.49 -0.27 1.36 16 42 H 0.18 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.13 1.28 8.03 -52.49 -0.42 0.86 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -29.08 355.75 -7.49 -36.57 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.37 Total: 4.62 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -1.32 Total: -18.87 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.01 Total: -36.49 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.20 Total: -3.56 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.07 Total: -3.80 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.08 -7.49 -36.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414171384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.152 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds