Wall clock time and date at job start Fri Apr 10 2020 22:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47038 * 2 1 4 4 H 1.09002 * 109.46869 * 306.65853 * 3 2 1 5 5 C 1.50696 * 109.47201 * 186.65640 * 3 2 1 6 6 H 1.07999 * 120.00332 * 245.39801 * 5 3 2 7 7 C 1.37882 * 119.99948 * 65.39211 * 5 3 2 8 8 N 1.31519 * 119.99663 * 187.29375 * 7 5 3 9 9 Si 1.86797 * 120.00162 * 7.29366 * 7 5 3 10 10 H 1.48505 * 109.46998 * 270.00053 * 9 7 5 11 11 H 1.48498 * 109.46974 * 29.99478 * 9 7 5 12 12 H 1.48500 * 109.47278 * 150.00004 * 9 7 5 13 13 N 1.46497 * 109.47324 * 66.65483 * 3 2 1 14 14 C 1.34778 * 119.99882 * 275.00255 * 13 3 2 15 15 O 1.21578 * 120.00344 * 359.97438 * 14 13 3 16 16 C 1.47672 * 119.99852 * 179.97438 * 14 13 3 17 17 C 1.39726 * 120.07799 * 359.97438 * 16 14 13 18 18 C 1.37703 * 119.92409 * 179.97438 * 17 16 14 19 19 C 1.39073 * 120.07334 * 0.02562 * 18 17 16 20 20 N 1.39830 * 119.91828 * 179.97438 * 19 18 17 21 21 C 1.35840 * 126.10638 * 353.33154 * 20 19 18 22 22 C 1.35287 * 107.61772 * 179.83847 * 21 20 19 23 23 C 1.39951 * 107.96767 * 0.42477 * 22 21 20 24 24 N 1.30829 * 108.37012 * 359.73391 * 23 22 21 25 25 C 1.39033 * 120.15805 * 359.97438 * 19 18 17 26 26 C 1.50701 * 119.95901 * 179.97438 * 25 19 18 27 27 C 1.37743 * 120.07871 * 359.72316 * 25 19 18 28 28 H 1.09004 * 109.47238 * 300.00002 * 1 2 3 29 29 H 1.09000 * 109.47211 * 59.99991 * 1 2 3 30 30 H 1.09002 * 109.47270 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46806 * 240.00235 * 2 1 3 32 32 H 1.09000 * 109.47211 * 120.00009 * 2 1 3 33 33 H 0.96997 * 120.00170 * 354.91047 * 8 7 5 34 34 H 0.97006 * 120.00096 * 94.99907 * 13 3 2 35 35 H 1.08010 * 120.03804 * 359.97438 * 17 16 14 36 36 H 1.08000 * 119.96088 * 180.02562 * 18 17 16 37 37 H 1.08000 * 126.18689 * 359.97438 * 21 20 19 38 38 H 1.07995 * 126.01493 * 180.19201 * 22 21 20 39 39 H 1.07995 * 125.81737 * 179.71955 * 23 22 21 40 40 H 1.09003 * 109.47266 * 83.23776 * 26 25 19 41 41 H 1.08995 * 109.47459 * 203.23289 * 26 25 19 42 42 H 1.08998 * 109.47438 * 323.24008 * 26 25 19 43 43 H 1.08003 * 120.03659 * 180.29944 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5826 1.9896 -0.8244 5 6 3.5379 1.4457 -0.1647 6 1 4.1684 1.8031 0.6360 7 6 4.1035 0.9923 -1.3376 8 7 5.4087 0.8597 -1.4299 9 14 3.0159 0.5664 -2.7954 10 1 2.6264 -0.8647 -2.7209 11 1 1.7965 1.4134 -2.7673 12 1 3.7603 0.8118 -4.0567 13 7 1.6867 2.0854 1.2681 14 6 0.4730 2.6510 1.4218 15 8 -0.3285 2.6281 0.5079 16 6 0.1168 3.2985 2.7003 17 6 1.0365 3.3253 3.7518 18 6 0.7011 3.9304 4.9424 19 6 -0.5515 4.5140 5.0990 20 7 -0.8888 5.1271 6.3096 21 6 -0.1467 5.1148 7.4473 22 6 -0.8201 5.8225 8.3832 23 6 -2.0132 6.2739 7.8075 24 7 -2.0555 5.8588 6.5675 25 6 -1.4691 4.4892 4.0548 26 6 -2.8254 5.1224 4.2296 27 6 -1.1381 3.8911 2.8590 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.9785 1.1499 -0.7005 34 1 2.3263 2.1040 1.9972 35 1 2.0093 2.8719 3.6310 36 1 1.4117 3.9519 5.7555 37 1 0.8092 4.6299 7.5798 38 1 -0.4960 6.0037 9.3973 39 1 -2.7701 6.8641 8.3025 40 1 -2.7538 6.1933 4.0392 41 1 -3.5286 4.6749 3.5273 42 1 -3.1749 4.9573 5.2488 43 1 -1.8497 3.8764 2.0466 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421868060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:08 Heat of formation + Delta-G solvation = 53.031793 kcal Electronic energy + Delta-G solvation = -25286.945014 eV Core-core repulsion = 21719.240634 eV Total energy + Delta-G solvation = -3567.704381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.56217 -41.25020 -39.66088 -37.11065 -34.94166 -34.42044 -33.99638 -33.01292 -31.14044 -30.45437 -29.16729 -27.84237 -25.44411 -24.17702 -23.58301 -22.66519 -21.84487 -21.43835 -21.05991 -19.87003 -19.09580 -18.25987 -17.46713 -16.63425 -16.50399 -16.24564 -15.92406 -15.75369 -15.32208 -14.95723 -14.59824 -14.58187 -14.45335 -14.42199 -14.36288 -14.03911 -13.77702 -13.66318 -13.62652 -13.11604 -13.02429 -12.73123 -12.49740 -12.30936 -12.23342 -11.71714 -11.54174 -11.39523 -11.26974 -11.01125 -10.86324 -10.66544 -10.16288 -9.95820 -9.86919 -9.08460 -8.78790 -6.47482 -0.57612 0.15789 0.94531 1.33858 1.41020 1.50586 1.67991 1.84532 1.92744 2.35806 2.39877 2.73970 3.02472 3.37473 3.60254 3.73267 3.83293 3.94102 4.09193 4.18435 4.28889 4.35590 4.36725 4.46739 4.52695 4.65275 4.75998 4.77370 4.81884 4.84881 4.97279 5.05756 5.08335 5.15150 5.17392 5.20297 5.28877 5.33441 5.44656 5.52477 5.60788 5.64420 5.78590 5.99523 6.12738 6.50683 6.61981 6.78446 7.25509 7.37363 8.60913 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.027672 B = 0.002899 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.623379 B = 9655.451200 C =10283.983927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C 0.245 3.755 4 H 0.026 0.974 5 C -0.604 4.604 6 H 0.044 0.956 7 C -0.008 4.008 8 N -0.935 5.935 9 Si 1.076 2.924 10 H -0.256 1.256 11 H -0.266 1.266 12 H -0.287 1.287 13 N -0.695 5.695 14 C 0.545 3.455 15 O -0.577 6.577 16 C -0.150 4.150 17 C -0.061 4.061 18 C -0.135 4.135 19 C 0.171 3.829 20 N -0.339 5.339 21 C 0.042 3.958 22 C -0.257 4.257 23 C 0.048 3.952 24 N -0.320 5.320 25 C -0.105 4.105 26 C -0.102 4.102 27 C -0.047 4.047 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.258 0.742 34 H 0.403 0.597 35 H 0.153 0.847 36 H 0.171 0.829 37 H 0.208 0.792 38 H 0.182 0.818 39 H 0.217 0.783 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.200 8.168 21.602 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C 0.141 3.859 4 H 0.044 0.956 5 C -0.642 4.642 6 H 0.062 0.938 7 C -0.208 4.208 8 N -0.570 5.570 9 Si 0.900 3.100 10 H -0.182 1.182 11 H -0.191 1.191 12 H -0.213 1.213 13 N -0.344 5.344 14 C 0.334 3.666 15 O -0.459 6.459 16 C -0.154 4.154 17 C -0.080 4.080 18 C -0.155 4.155 19 C 0.077 3.923 20 N -0.115 5.115 21 C -0.098 4.098 22 C -0.285 4.285 23 C -0.138 4.138 24 N -0.138 5.138 25 C -0.108 4.108 26 C -0.159 4.159 27 C -0.067 4.067 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.239 0.761 35 H 0.170 0.830 36 H 0.188 0.812 37 H 0.225 0.775 38 H 0.199 0.801 39 H 0.234 0.766 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.341 7.493 18.314 24.438 hybrid contribution 1.304 0.693 2.330 2.758 sum -13.037 8.186 20.643 25.751 Atomic orbital electron populations 1.21792 0.95463 1.00596 1.01509 1.22158 0.95468 0.98218 1.01441 1.18971 0.93900 0.89946 0.83107 0.95604 1.22343 0.91404 1.47414 1.03027 0.93813 1.26782 0.98017 0.93495 1.02497 1.70933 1.04702 1.44939 1.36450 0.83582 0.74328 0.78639 0.73461 1.18157 1.19139 1.21339 1.46005 1.14952 1.56089 1.17318 1.18573 0.82012 0.78330 0.87728 1.90716 1.50628 1.61159 1.43430 1.20026 0.96842 1.04094 0.94398 1.21320 0.99128 0.96422 0.91179 1.20961 0.94639 1.00380 0.99518 1.17772 0.94602 0.95904 0.83978 1.46089 1.16257 1.40590 1.08540 1.23488 0.99776 1.01245 0.85269 1.22041 0.96850 1.06832 1.02732 1.24851 0.99200 0.98301 0.91469 1.77595 1.03302 1.13992 1.18929 1.19753 0.97797 1.01072 0.92143 1.20955 0.91091 0.99883 1.03973 1.21041 0.95280 0.93861 0.96492 0.93291 0.94142 0.92150 0.92847 0.91923 0.93218 0.76127 0.82958 0.81158 0.77528 0.80058 0.76614 0.91275 0.91499 0.89114 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 8.55 71.98 0.62 -4.66 16 2 C -0.13 -5.75 5.19 30.59 0.16 -5.60 16 3 C 0.25 11.56 1.80 44.24 0.08 11.64 16 4 H 0.03 1.37 6.02 -2.39 -0.01 1.35 16 5 C -0.60 -32.48 9.08 25.60 0.23 -32.24 16 6 H 0.04 2.46 7.95 -2.91 -0.02 2.44 16 7 C -0.01 -0.45 5.41 84.66 0.46 0.01 16 8 N -0.93 -56.34 13.70 21.45 0.29 -56.05 16 9 Si 1.08 50.85 25.43 68.60 1.74 52.59 16 10 H -0.26 -11.10 6.75 99.48 0.67 -10.43 16 11 H -0.27 -12.23 6.36 99.48 0.63 -11.60 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 N -0.69 -27.44 4.99 -449.14 -2.24 -29.68 16 14 C 0.55 20.85 6.41 86.74 0.56 21.41 16 15 O -0.58 -25.67 13.48 -3.96 -0.05 -25.72 16 16 C -0.15 -4.52 5.88 -20.08 -0.12 -4.63 16 17 C -0.06 -1.42 9.53 22.50 0.21 -1.21 16 18 C -0.13 -2.57 9.44 22.34 0.21 -2.36 16 19 C 0.17 3.87 6.66 38.26 0.25 4.13 16 20 N -0.34 -6.86 3.79 -187.28 -0.71 -7.57 16 21 C 0.04 0.58 10.80 83.39 0.90 1.48 16 22 C -0.26 -2.95 10.80 22.00 0.24 -2.71 16 23 C 0.05 0.68 12.02 85.26 1.02 1.70 16 24 N -0.32 -6.58 8.64 -56.98 -0.49 -7.07 16 25 C -0.11 -2.66 5.89 -19.79 -0.12 -2.78 16 26 C -0.10 -2.29 8.68 71.24 0.62 -1.67 16 27 C -0.05 -1.35 9.21 22.50 0.21 -1.14 16 28 H 0.05 1.91 5.61 -2.38 -0.01 1.89 16 29 H 0.04 1.65 7.94 -2.39 -0.02 1.63 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 2.36 4.55 -2.39 -0.01 2.35 16 32 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.26 15.55 8.72 -92.71 -0.81 14.74 16 34 H 0.40 13.80 6.55 -92.70 -0.61 13.19 16 35 H 0.15 3.03 6.40 -2.91 -0.02 3.01 16 36 H 0.17 1.92 6.77 -2.91 -0.02 1.90 16 37 H 0.21 1.33 7.09 -2.91 -0.02 1.31 16 38 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 39 H 0.22 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 42 H 0.09 2.07 5.73 -2.39 -0.01 2.05 16 43 H 0.14 4.00 7.64 -2.91 -0.02 3.98 16 Total: -1.00 -71.77 345.14 4.37 -67.40 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.30 Total: 24.74 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 5.54 Total: -18.64 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -3.15 Total: -100.36 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.74 Total: 52.59 kcal Total: -71.77 4.37 -67.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421868060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.427 kcal (2) G-P(sol) polarization free energy of solvation -71.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds