Wall clock time and date at job start Fri Apr 10 2020 22:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47174 * 2 1 4 4 N 1.46493 * 109.47153 * 179.97438 * 3 2 1 5 5 C 1.34781 * 119.99491 * 180.02562 * 4 3 2 6 6 O 1.21635 * 120.00608 * 359.97438 * 5 4 3 7 7 C 1.47181 * 119.99612 * 180.02562 * 5 4 3 8 8 C 1.41087 * 126.47923 * 359.97182 * 7 5 4 9 9 N 1.30460 * 108.30116 * 180.02562 * 8 7 5 10 10 N 1.39915 * 109.22132 * 0.02562 * 9 8 7 11 11 C 1.46491 * 125.81235 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.46957 * 90.02299 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.35177 * 108.38043 * 0.22680 * 10 9 8 21 21 C 1.47741 * 126.47072 * 179.77133 * 20 10 9 22 22 C 1.39613 * 120.14982 * 314.71777 * 21 20 10 23 23 C 1.37948 * 119.84983 * 179.79139 * 22 21 20 24 24 C 1.38362 * 120.15069 * 0.46953 * 23 22 21 25 25 C 1.38365 * 120.29543 * 359.78548 * 24 23 22 26 26 C 1.37948 * 120.15347 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47268 * 300.00370 * 1 2 3 29 29 H 1.09001 * 109.46664 * 60.00395 * 1 2 3 30 30 H 1.09002 * 109.47512 * 240.00019 * 2 1 3 31 31 H 1.08995 * 109.47109 * 119.99584 * 2 1 3 32 32 H 1.09002 * 109.46885 * 59.99635 * 3 2 1 33 33 H 1.09007 * 109.46566 * 300.00160 * 3 2 1 34 34 H 0.96998 * 120.00402 * 359.97438 * 4 3 2 35 35 H 1.07993 * 125.84991 * 0.07353 * 8 7 5 36 36 H 1.09004 * 109.47166 * 330.02565 * 11 10 9 37 37 H 1.08994 * 109.47507 * 210.02271 * 11 10 9 38 38 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 39 39 H 1.08003 * 120.07535 * 0.03083 * 22 21 20 40 40 H 1.08002 * 119.92426 * 180.23893 * 23 22 21 41 41 H 1.07994 * 119.85432 * 179.76877 * 24 23 22 42 42 H 1.08008 * 119.91882 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.07594 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1788 2.6098 0.0012 6 8 3.5706 3.6632 0.0008 7 6 5.6506 2.6099 0.0013 8 6 6.4894 1.4754 0.0013 9 7 7.7289 1.8825 0.0019 10 7 7.7543 3.2814 0.0029 11 6 8.9577 4.1168 0.0044 12 6 9.3710 4.4047 -1.4160 13 1 8.7946 4.0057 -2.2376 14 6 10.4813 5.1828 -1.6666 15 7 11.1829 5.6691 -0.6662 16 14 10.9891 5.5461 -3.4272 17 1 10.0412 4.8878 -4.3616 18 1 10.9697 7.0134 -3.6552 19 1 12.3599 5.0264 -3.6643 20 6 6.4795 3.7309 0.0080 21 6 6.0464 5.1434 0.0155 22 6 6.6550 6.0589 0.8761 23 6 6.2486 7.3772 0.8748 24 6 5.2338 7.7908 0.0302 25 6 4.6228 6.8876 -0.8214 26 6 5.0227 5.5674 -0.8339 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8901 34 1 3.9900 0.6026 0.0013 35 1 6.1616 0.4465 0.0001 36 1 9.7635 3.5924 0.5180 37 1 8.7484 5.0545 0.5190 38 1 11.9643 6.2162 -0.8425 39 1 7.4447 5.7366 1.5385 40 1 6.7213 8.0872 1.5373 41 1 4.9169 8.8232 0.0359 42 1 3.8314 7.2171 -1.4785 43 1 4.5452 4.8635 -1.4995 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428321142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:13 Heat of formation + Delta-G solvation = 49.007729 kcal Electronic energy + Delta-G solvation = -25593.489796 eV Core-core repulsion = 22025.610919 eV Total energy + Delta-G solvation = -3567.878877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85479 -38.82827 -38.30013 -35.66562 -33.90581 -32.67382 -32.04738 -31.34174 -30.38112 -28.57863 -27.52653 -26.05290 -23.64841 -22.71435 -22.11298 -21.82434 -21.56519 -19.72246 -19.14507 -17.45534 -16.73920 -16.22582 -15.79865 -15.76302 -15.48158 -14.77911 -14.73517 -14.19158 -14.11787 -13.86460 -13.53987 -13.38010 -13.06231 -12.97694 -12.66127 -12.44178 -12.31594 -12.22776 -12.08373 -11.69785 -11.34025 -11.12045 -11.08646 -10.98121 -10.91632 -10.58328 -10.35479 -10.29477 -9.91123 -9.40736 -9.11252 -8.90522 -8.69029 -8.36160 -8.16340 -7.76817 -6.31778 -4.38322 1.38786 1.94805 2.37250 2.75793 3.14659 3.18650 3.26368 3.33127 3.56450 3.90248 4.26289 4.35461 4.65795 4.76151 4.89927 4.99295 5.03796 5.12942 5.36500 5.37604 5.42454 5.42769 5.48499 5.52894 5.62116 5.72170 5.78533 5.90071 5.92715 5.95397 6.03890 6.22173 6.36068 6.50909 6.59493 6.70202 6.84523 6.92288 6.94629 7.02586 7.11285 7.41131 7.55362 7.73211 7.77072 7.78856 8.31046 8.62972 8.66075 9.27813 10.76714 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.004058 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.001787 B = 6899.035241 C = 8028.166895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.123 3.877 4 N -0.736 5.736 5 C 0.598 3.402 6 O -0.546 6.546 7 C -0.317 4.317 8 C 0.057 3.943 9 N -0.289 5.289 10 N -0.305 5.305 11 C 0.245 3.755 12 C -0.536 4.536 13 H 0.065 0.935 14 C 0.068 3.932 15 N -0.889 5.889 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.197 3.803 21 C -0.031 4.031 22 C -0.086 4.086 23 C -0.129 4.129 24 C -0.111 4.111 25 C -0.133 4.133 26 C -0.039 4.039 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.178 0.822 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.268 0.732 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.401 -5.472 2.514 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.001 4.001 4 N -0.388 5.388 5 C 0.388 3.612 6 O -0.425 6.425 7 C -0.332 4.332 8 C -0.129 4.129 9 N -0.110 5.110 10 N -0.081 5.081 11 C 0.128 3.872 12 C -0.574 4.574 13 H 0.083 0.917 14 C -0.135 4.135 15 N -0.527 5.527 16 Si 0.733 3.267 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.206 1.206 20 C 0.061 3.939 21 C -0.033 4.033 22 C -0.105 4.105 23 C -0.147 4.147 24 C -0.129 4.129 25 C -0.151 4.151 26 C -0.058 4.058 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.195 0.805 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.256 -4.925 2.565 16.235 hybrid contribution -0.082 -0.090 -0.900 0.909 sum -15.338 -5.016 1.665 16.223 Atomic orbital electron populations 1.21675 0.94794 1.01926 1.02283 1.21742 0.96755 0.96257 1.02694 1.21286 0.80012 0.96581 1.02178 1.45756 1.06692 1.08658 1.77739 1.17251 0.85927 0.83183 0.74860 1.90762 1.69995 1.30695 1.51002 1.19860 0.92992 0.92290 1.28061 1.23665 0.90281 0.98549 1.00380 1.77119 1.20374 0.90213 1.23272 1.49638 1.06277 1.04057 1.48111 1.20065 0.78617 0.88668 0.99847 1.21243 1.12323 1.32990 0.90862 0.91669 1.24891 0.95520 0.94878 0.98245 1.69916 1.17895 1.33896 1.30971 0.86289 0.78561 0.78253 0.83568 1.19521 1.20523 1.20566 1.19775 0.85163 0.92791 0.96188 1.17847 0.97893 0.88867 0.98670 1.21233 0.98112 0.93184 0.97961 1.20901 0.98092 0.95474 1.00239 1.21140 0.96463 0.99127 0.96202 1.20931 1.00739 0.93311 1.00149 1.21060 0.93262 0.95219 0.96299 0.92374 0.92408 0.92402 0.91330 0.91359 0.91806 0.91779 0.76920 0.80521 0.92438 0.91921 0.92205 0.85961 0.86126 0.86526 0.86331 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.14 -0.99 6.05 -26.73 -0.16 -1.15 16 3 C 0.12 1.28 5.67 -4.04 -0.02 1.25 16 4 N -0.74 -8.97 5.55 -61.46 -0.34 -9.31 16 5 C 0.60 9.99 7.70 -12.63 -0.10 9.89 16 6 O -0.55 -10.42 12.92 5.25 0.07 -10.35 16 7 C -0.32 -5.86 6.13 -104.75 -0.64 -6.50 16 8 C 0.06 0.98 11.48 -17.05 -0.20 0.79 16 9 N -0.29 -6.18 12.48 30.82 0.38 -5.80 16 10 N -0.30 -6.98 3.59 -58.20 -0.21 -7.19 16 11 C 0.24 6.17 5.96 -5.20 -0.03 6.14 16 12 C -0.54 -14.69 9.39 -34.44 -0.32 -15.01 16 13 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 15 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 16 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.20 4.18 6.50 -82.07 -0.53 3.65 16 21 C -0.03 -0.63 5.26 -104.99 -0.55 -1.18 16 22 C -0.09 -1.65 8.50 -39.17 -0.33 -1.99 16 23 C -0.13 -2.15 10.03 -39.64 -0.40 -2.55 16 24 C -0.11 -1.72 10.04 -39.49 -0.40 -2.11 16 25 C -0.13 -2.18 10.03 -39.64 -0.40 -2.58 16 26 C -0.04 -0.74 7.54 -39.17 -0.30 -1.04 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 34 H 0.40 3.83 7.42 -40.82 -0.30 3.52 16 35 H 0.18 2.12 7.49 -52.49 -0.39 1.73 16 36 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.06 1.57 5.08 -51.93 -0.26 1.31 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.12 2.34 6.56 -52.48 -0.34 2.00 16 40 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.13 2.38 6.74 -52.48 -0.35 2.03 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -31.59 363.06 -8.87 -40.47 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.85 Total: 5.75 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -4.11 Total: -11.21 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.57 Total: -46.29 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.59 -8.87 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428321142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.476 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds