Wall clock time and date at job start Fri Apr 10 2020 22:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47174 * 2 1 4 4 N 1.46493 * 109.47153 * 179.97438 * 3 2 1 5 5 C 1.34781 * 119.99491 * 180.02562 * 4 3 2 6 6 O 1.21635 * 120.00608 * 359.97438 * 5 4 3 7 7 C 1.47181 * 119.99612 * 180.02562 * 5 4 3 8 8 C 1.41087 * 126.47923 * 359.97182 * 7 5 4 9 9 N 1.30460 * 108.30116 * 180.02562 * 8 7 5 10 10 N 1.39915 * 109.22132 * 0.02562 * 9 8 7 11 11 C 1.46491 * 125.81235 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.46957 * 90.02299 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.35177 * 108.38043 * 0.22680 * 10 9 8 21 21 C 1.47741 * 126.47072 * 179.77133 * 20 10 9 22 22 C 1.39613 * 120.14982 * 314.71777 * 21 20 10 23 23 C 1.37948 * 119.84983 * 179.79139 * 22 21 20 24 24 C 1.38362 * 120.15069 * 0.46953 * 23 22 21 25 25 C 1.38365 * 120.29543 * 359.78548 * 24 23 22 26 26 C 1.37948 * 120.15347 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47268 * 300.00370 * 1 2 3 29 29 H 1.09001 * 109.46664 * 60.00395 * 1 2 3 30 30 H 1.09002 * 109.47512 * 240.00019 * 2 1 3 31 31 H 1.08995 * 109.47109 * 119.99584 * 2 1 3 32 32 H 1.09002 * 109.46885 * 59.99635 * 3 2 1 33 33 H 1.09007 * 109.46566 * 300.00160 * 3 2 1 34 34 H 0.96998 * 120.00402 * 359.97438 * 4 3 2 35 35 H 1.07993 * 125.84991 * 0.07353 * 8 7 5 36 36 H 1.09004 * 109.47166 * 330.02565 * 11 10 9 37 37 H 1.08994 * 109.47507 * 210.02271 * 11 10 9 38 38 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 39 39 H 1.08003 * 120.07535 * 0.03083 * 22 21 20 40 40 H 1.08002 * 119.92426 * 180.23893 * 23 22 21 41 41 H 1.07994 * 119.85432 * 179.76877 * 24 23 22 42 42 H 1.08008 * 119.91882 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.07594 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1788 2.6098 0.0012 6 8 3.5706 3.6632 0.0008 7 6 5.6506 2.6099 0.0013 8 6 6.4894 1.4754 0.0013 9 7 7.7289 1.8825 0.0019 10 7 7.7543 3.2814 0.0029 11 6 8.9577 4.1168 0.0044 12 6 9.3710 4.4047 -1.4160 13 1 8.7946 4.0057 -2.2376 14 6 10.4813 5.1828 -1.6666 15 7 11.1829 5.6691 -0.6662 16 14 10.9891 5.5461 -3.4272 17 1 10.0412 4.8878 -4.3616 18 1 10.9697 7.0134 -3.6552 19 1 12.3599 5.0264 -3.6643 20 6 6.4795 3.7309 0.0080 21 6 6.0464 5.1434 0.0155 22 6 6.6550 6.0589 0.8761 23 6 6.2486 7.3772 0.8748 24 6 5.2338 7.7908 0.0302 25 6 4.6228 6.8876 -0.8214 26 6 5.0227 5.5674 -0.8339 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8901 34 1 3.9900 0.6026 0.0013 35 1 6.1616 0.4465 0.0001 36 1 9.7635 3.5924 0.5180 37 1 8.7484 5.0545 0.5190 38 1 11.9643 6.2162 -0.8425 39 1 7.4447 5.7366 1.5385 40 1 6.7213 8.0872 1.5373 41 1 4.9169 8.8232 0.0359 42 1 3.8314 7.2171 -1.4785 43 1 4.5452 4.8635 -1.4995 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428321142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:12 Heat of formation + Delta-G solvation = 29.925433 kcal Electronic energy + Delta-G solvation = -25594.317266 eV Core-core repulsion = 22025.610919 eV Total energy + Delta-G solvation = -3568.706348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.36823 -40.10878 -39.66210 -36.62682 -35.81972 -34.01166 -33.33935 -32.88683 -31.75024 -29.97118 -29.30186 -27.12059 -25.38855 -24.15079 -23.53723 -22.96682 -22.50273 -21.19605 -20.54647 -19.02214 -18.63534 -17.55615 -17.06477 -16.84206 -16.65098 -16.57039 -16.13665 -15.55943 -15.51683 -15.17762 -14.92470 -14.72886 -14.51331 -14.19571 -13.98662 -13.72853 -13.58706 -13.49903 -13.29931 -13.03314 -12.86667 -12.75823 -12.39386 -12.27584 -11.99362 -11.94152 -11.86510 -11.78883 -11.67551 -10.80648 -10.75707 -10.66514 -10.06053 -9.76106 -9.69893 -9.21684 -8.38977 -6.54183 -0.04966 0.57135 0.93011 1.28901 1.33737 1.35782 1.47141 1.62051 2.30379 2.40381 2.53642 2.93028 2.97119 3.47966 3.70169 3.99108 4.00611 4.07875 4.13634 4.15569 4.25918 4.30389 4.41942 4.58927 4.60437 4.74376 4.76428 4.81701 4.83698 4.93418 4.97601 5.01224 5.17053 5.20780 5.31251 5.41455 5.44878 5.52765 5.57127 5.60897 5.62293 5.65197 5.73595 5.96864 6.10466 6.52149 6.65304 6.79618 7.15705 7.39561 8.69378 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.004058 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.001787 B = 6899.035241 C = 8028.166895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.122 3.878 4 N -0.716 5.716 5 C 0.597 3.403 6 O -0.572 6.572 7 C -0.318 4.318 8 C 0.080 3.920 9 N -0.329 5.329 10 N -0.331 5.331 11 C 0.262 3.738 12 C -0.553 4.553 13 H 0.047 0.953 14 C 0.026 3.974 15 N -0.914 5.914 16 Si 0.969 3.031 17 H -0.274 1.274 18 H -0.268 1.268 19 H -0.270 1.270 20 C 0.178 3.822 21 C -0.059 4.059 22 C -0.110 4.110 23 C -0.132 4.132 24 C -0.102 4.102 25 C -0.133 4.133 26 C -0.054 4.054 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.412 0.588 35 H 0.232 0.768 36 H 0.031 0.969 37 H 0.057 0.943 38 H 0.274 0.726 39 H 0.108 0.892 40 H 0.146 0.854 41 H 0.159 0.841 42 H 0.150 0.850 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.250 -5.623 1.678 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.001 4.001 4 N -0.368 5.368 5 C 0.385 3.615 6 O -0.453 6.453 7 C -0.333 4.333 8 C -0.106 4.106 9 N -0.149 5.149 10 N -0.108 5.108 11 C 0.144 3.856 12 C -0.591 4.591 13 H 0.065 0.935 14 C -0.175 4.175 15 N -0.552 5.552 16 Si 0.792 3.208 17 H -0.199 1.199 18 H -0.193 1.193 19 H -0.195 1.195 20 C 0.043 3.957 21 C -0.061 4.061 22 C -0.129 4.129 23 C -0.150 4.150 24 C -0.120 4.120 25 C -0.150 4.150 26 C -0.073 4.073 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.248 0.752 35 H 0.248 0.752 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.163 0.837 41 H 0.176 0.824 42 H 0.167 0.833 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.126 -5.120 1.741 17.960 hybrid contribution 0.351 -0.078 -0.593 0.693 sum -16.775 -5.198 1.148 17.600 Atomic orbital electron populations 1.21684 0.94060 1.02764 1.02182 1.21698 0.97249 0.93866 1.03683 1.21437 0.78470 0.98838 1.01388 1.45622 1.07605 1.07881 1.75723 1.17094 0.85174 0.84080 0.75139 1.90742 1.70150 1.32026 1.52364 1.20209 0.94192 0.91942 1.26997 1.24489 0.88579 1.00471 0.97066 1.77052 1.22768 0.89626 1.25468 1.49343 1.06100 1.04597 1.50722 1.19549 0.79117 0.88515 0.98424 1.21353 1.12764 1.33591 0.91369 0.93481 1.25682 0.95250 0.94401 1.02214 1.69994 1.18253 1.34156 1.32810 0.85344 0.78289 0.78494 0.78624 1.19891 1.19325 1.19487 1.20288 0.84933 0.94272 0.96183 1.18077 0.99129 0.88908 1.00007 1.21303 0.98525 0.94599 0.98468 1.21272 0.98340 0.94685 1.00706 1.21599 0.95028 1.00894 0.94491 1.21341 1.01049 0.92286 1.00368 1.21124 0.93357 0.96483 0.96374 0.91046 0.92557 0.92560 0.90342 0.90323 0.92679 0.92567 0.75155 0.75174 0.95067 0.92541 0.91652 0.87447 0.83669 0.82371 0.83257 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.13 -1.50 6.05 30.60 0.19 -1.31 16 3 C 0.12 2.32 5.67 86.38 0.49 2.81 16 4 N -0.72 -16.14 5.55 -466.59 -2.59 -18.73 16 5 C 0.60 19.64 7.70 86.59 0.67 20.31 16 6 O -0.57 -21.91 12.92 -4.14 -0.05 -21.97 16 7 C -0.32 -11.85 6.13 -19.94 -0.12 -11.97 16 8 C 0.08 2.68 11.48 85.60 0.98 3.66 16 9 N -0.33 -14.41 12.48 -56.41 -0.70 -15.12 16 10 N -0.33 -15.98 3.59 -338.04 -1.21 -17.20 16 11 C 0.26 14.06 5.96 85.64 0.51 14.57 16 12 C -0.55 -31.59 9.39 25.60 0.24 -31.35 16 13 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 14 C 0.03 1.44 5.46 84.66 0.46 1.90 16 15 N -0.91 -51.91 13.29 21.45 0.28 -51.63 16 16 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 C 0.18 7.88 6.50 41.43 0.27 8.15 16 21 C -0.06 -2.51 5.26 -20.10 -0.11 -2.62 16 22 C -0.11 -4.40 8.50 22.53 0.19 -4.21 16 23 C -0.13 -4.32 10.03 22.23 0.22 -4.10 16 24 C -0.10 -2.93 10.04 22.33 0.22 -2.70 16 25 C -0.13 -4.14 10.03 22.23 0.22 -3.92 16 26 C -0.05 -2.07 7.54 22.53 0.17 -1.90 16 27 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.41 6.72 7.42 -92.71 -0.69 6.03 16 35 H 0.23 4.78 7.49 -2.91 -0.02 4.76 16 36 H 0.03 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.06 3.05 5.08 -2.39 -0.01 3.04 16 38 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 39 H 0.11 4.46 6.56 -2.91 -0.02 4.45 16 40 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 41 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 42 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 43 H 0.12 4.54 6.74 -2.91 -0.02 4.52 16 Total: -1.00 -72.01 363.06 3.42 -68.60 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.34 Total: 23.78 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.32 Total: -13.53 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -4.22 Total: -102.68 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -72.01 3.42 -68.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428321142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.522 kcal (2) G-P(sol) polarization free energy of solvation -72.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds