Wall clock time and date at job start Fri Apr 10 2020 22:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47037 * 2 1 4 4 N 1.46493 * 109.47087 * 120.00304 * 2 1 3 5 5 C 1.34781 * 119.99491 * 155.00157 * 4 2 1 6 6 O 1.21635 * 120.00608 * 359.97438 * 5 4 2 7 7 C 1.47181 * 119.99612 * 180.02562 * 5 4 2 8 8 C 1.41087 * 126.47923 * 359.97182 * 7 5 4 9 9 N 1.30460 * 108.30116 * 180.02562 * 8 7 5 10 10 N 1.39915 * 109.22132 * 0.02562 * 9 8 7 11 11 C 1.46491 * 125.81235 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.46957 * 90.02299 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.35177 * 108.38043 * 0.22680 * 10 9 8 21 21 C 1.47741 * 126.47072 * 179.77133 * 20 10 9 22 22 C 1.39613 * 120.14982 * 314.71777 * 21 20 10 23 23 C 1.37948 * 119.84983 * 179.79139 * 22 21 20 24 24 C 1.38362 * 120.15069 * 0.46953 * 23 22 21 25 25 C 1.38365 * 120.29543 * 359.78548 * 24 23 22 26 26 C 1.37948 * 120.15347 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47176 * 299.99889 * 1 2 3 28 28 H 1.08999 * 109.46988 * 59.99685 * 1 2 3 29 29 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46591 * 240.00587 * 2 1 3 31 31 H 1.08997 * 109.46694 * 60.00348 * 3 2 1 32 32 H 1.08999 * 109.47284 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47044 * 300.00640 * 3 2 1 34 34 H 0.96998 * 120.00402 * 335.00094 * 4 2 1 35 35 H 1.07993 * 125.84991 * 0.07353 * 8 7 5 36 36 H 1.09004 * 109.47166 * 330.02565 * 11 10 9 37 37 H 1.08994 * 109.47507 * 210.02271 * 11 10 9 38 38 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 39 39 H 1.08003 * 120.07535 * 0.03083 * 22 21 20 40 40 H 1.08002 * 119.92426 * 180.23893 * 23 22 21 41 41 H 1.07994 * 119.85432 * 179.76877 * 24 23 22 42 42 H 1.08008 * 119.91882 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.07594 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2404 -1.2592 1.1942 6 8 3.9376 -1.1992 0.1993 7 6 3.7308 -1.9535 2.3957 8 6 3.0410 -2.1052 3.6170 9 7 3.8019 -2.7771 4.4365 10 7 5.0060 -3.0892 3.7959 11 6 6.1213 -3.8355 4.3835 12 6 5.9385 -5.3069 4.1140 13 1 5.0779 -5.6516 3.5599 14 6 6.8732 -6.2125 4.5693 15 7 6.7165 -7.4960 4.3293 16 14 8.3621 -5.6162 5.5270 17 1 8.0418 -5.5946 6.9769 18 1 9.5052 -6.5331 5.2862 19 1 8.7229 -4.2471 5.0792 20 6 4.9674 -2.5801 2.5443 21 6 6.0328 -2.6733 1.5250 22 6 7.3610 -2.4215 1.8740 23 6 8.3514 -2.5145 0.9183 24 6 8.0299 -2.8468 -0.3858 25 6 6.7149 -3.0924 -0.7395 26 6 5.7153 -3.0077 0.2073 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.4622 -0.7388 1.9894 35 1 2.0522 -1.7302 3.8358 36 1 6.1465 -3.6636 5.4596 37 1 7.0579 -3.4984 3.9397 38 1 7.3739 -8.1331 4.6499 39 1 7.6129 -2.1584 2.8907 40 1 9.3798 -2.3238 1.1877 41 1 8.8086 -2.9146 -1.1309 42 1 6.4708 -3.3518 -1.7592 43 1 4.6893 -3.2001 -0.0702 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428338646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:15 Heat of formation + Delta-G solvation = 37.050780 kcal Electronic energy + Delta-G solvation = -25971.935748 eV Core-core repulsion = 22403.538378 eV Total energy + Delta-G solvation = -3568.397370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.41060 -40.24420 -39.67971 -36.79434 -35.79108 -34.07656 -33.10580 -32.39918 -31.75840 -29.82351 -29.55281 -28.02404 -25.47408 -24.25171 -23.55110 -23.29269 -22.04541 -21.11171 -20.65352 -19.30426 -18.84148 -17.65948 -17.05730 -16.91400 -16.57649 -16.32668 -15.70951 -15.61215 -15.42483 -14.99955 -14.95252 -14.82227 -14.61430 -14.38960 -13.98693 -13.77695 -13.68665 -13.55588 -13.15679 -13.06928 -12.98476 -12.63960 -12.35426 -12.22158 -12.18359 -11.96016 -11.87095 -11.82887 -11.81488 -10.93380 -10.77767 -10.68839 -10.05984 -9.78010 -9.69819 -9.23879 -8.44703 -6.55998 -0.07305 0.55394 0.89558 1.26926 1.29638 1.32585 1.41045 1.57473 2.22132 2.39540 2.53331 2.87356 2.95326 3.44135 3.64884 3.95986 3.98870 4.06164 4.13258 4.21750 4.23433 4.27913 4.40842 4.45579 4.57307 4.58594 4.69225 4.80374 4.81511 4.86624 4.98468 4.99748 5.11425 5.14562 5.15769 5.32970 5.39996 5.47724 5.55214 5.58174 5.59764 5.70189 5.77784 6.08075 6.16038 6.44795 6.64419 6.76354 7.06783 7.41698 8.72101 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.004504 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.226679 B = 6215.177996 C = 7392.865800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 C -0.157 4.157 4 N -0.712 5.712 5 C 0.598 3.402 6 O -0.570 6.570 7 C -0.316 4.316 8 C 0.081 3.919 9 N -0.325 5.325 10 N -0.332 5.332 11 C 0.231 3.769 12 C -0.550 4.550 13 H 0.023 0.977 14 C 0.026 3.974 15 N -0.934 5.934 16 Si 0.944 3.056 17 H -0.260 1.260 18 H -0.271 1.271 19 H -0.236 1.236 20 C 0.181 3.819 21 C -0.061 4.061 22 C -0.114 4.114 23 C -0.131 4.131 24 C -0.103 4.103 25 C -0.134 4.134 26 C -0.056 4.056 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.080 0.920 34 H 0.410 0.590 35 H 0.232 0.768 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.275 0.725 39 H 0.119 0.881 40 H 0.153 0.847 41 H 0.159 0.841 42 H 0.146 0.854 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 17.349 -8.432 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.032 3.968 3 C -0.216 4.216 4 N -0.365 5.365 5 C 0.386 3.614 6 O -0.451 6.451 7 C -0.331 4.331 8 C -0.105 4.105 9 N -0.145 5.145 10 N -0.108 5.108 11 C 0.111 3.889 12 C -0.588 4.588 13 H 0.042 0.958 14 C -0.174 4.174 15 N -0.572 5.572 16 Si 0.764 3.236 17 H -0.184 1.184 18 H -0.196 1.196 19 H -0.159 1.159 20 C 0.046 3.954 21 C -0.063 4.063 22 C -0.133 4.133 23 C -0.148 4.148 24 C -0.121 4.121 25 C -0.152 4.152 26 C -0.075 4.075 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.247 0.753 35 H 0.248 0.752 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.171 0.829 41 H 0.176 0.824 42 H 0.164 0.836 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.874 16.631 -7.815 19.012 hybrid contribution 0.030 -0.338 0.267 0.432 sum -4.844 16.293 -7.548 18.599 Atomic orbital electron populations 1.22026 0.91609 1.03024 1.04251 1.21010 0.95669 0.92621 0.87505 1.22139 1.00338 0.95852 1.03248 1.45759 1.16525 1.56477 1.17692 1.17089 0.81690 0.77152 0.85460 1.90741 1.57221 1.61852 1.35265 1.20253 0.96614 1.17652 0.98628 1.24492 1.00533 0.95753 0.89734 1.77049 0.93336 1.20611 1.23462 1.48970 1.13856 1.38869 1.09070 1.20030 0.82993 0.90248 0.95593 1.21117 1.09460 0.90376 1.37863 0.95833 1.25771 1.01155 0.94420 0.96080 1.70017 1.37657 1.02944 1.46553 0.85784 0.78035 0.80267 0.79508 1.18435 1.19621 1.15909 1.20273 0.95378 0.93791 0.85959 1.18099 0.91487 1.04358 0.92373 1.21369 0.91943 0.99931 1.00053 1.21327 0.99709 1.00582 0.93225 1.21620 0.96718 0.97047 0.96698 1.21335 0.92970 1.00974 0.99923 1.21114 0.99633 0.95326 0.91424 0.90526 0.89596 0.92134 0.91645 0.91377 0.94960 0.90075 0.75327 0.75185 0.92571 0.91219 0.91624 0.86351 0.82942 0.82373 0.83645 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.38 71.98 0.68 -1.08 16 2 C 0.14 2.56 3.18 44.99 0.14 2.70 16 3 C -0.16 -2.78 9.48 71.98 0.68 -2.10 16 4 N -0.71 -15.96 5.07 -446.03 -2.26 -18.22 16 5 C 0.60 19.46 7.66 86.59 0.66 20.12 16 6 O -0.57 -21.59 12.58 -4.14 -0.05 -21.64 16 7 C -0.32 -11.62 6.13 -19.94 -0.12 -11.74 16 8 C 0.08 2.67 11.48 85.60 0.98 3.66 16 9 N -0.32 -13.80 12.48 -56.41 -0.70 -14.50 16 10 N -0.33 -15.35 3.59 -338.04 -1.21 -16.56 16 11 C 0.23 11.22 5.03 85.64 0.43 11.65 16 12 C -0.55 -32.18 9.94 25.60 0.25 -31.92 16 13 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 14 C 0.03 1.48 5.47 84.66 0.46 1.94 16 15 N -0.93 -57.39 13.96 21.45 0.30 -57.09 16 16 Si 0.94 41.21 27.47 68.60 1.88 43.09 16 17 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 20 C 0.18 7.79 6.50 41.43 0.27 8.06 16 21 C -0.06 -2.53 5.26 -20.10 -0.11 -2.64 16 22 C -0.11 -4.21 8.50 22.53 0.19 -4.02 16 23 C -0.13 -3.93 10.03 22.23 0.22 -3.71 16 24 C -0.10 -2.85 10.04 22.33 0.22 -2.63 16 25 C -0.13 -4.24 10.03 22.23 0.22 -4.01 16 26 C -0.06 -2.15 7.54 22.53 0.17 -1.98 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 1.54 7.58 -2.39 -0.02 1.52 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.41 6.74 7.55 -92.71 -0.70 6.04 16 35 H 0.23 4.71 7.49 -2.91 -0.02 4.69 16 36 H 0.06 2.63 7.58 -2.38 -0.02 2.61 16 37 H 0.07 3.17 4.13 -2.39 -0.01 3.16 16 38 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.12 4.23 6.56 -2.91 -0.02 4.21 16 40 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 42 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 43 H 0.11 4.51 6.74 -2.91 -0.02 4.49 16 Total: -1.00 -77.54 358.58 3.60 -73.94 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.28 Total: 28.68 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 5.37 Total: -17.70 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -3.88 Total: -106.37 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.88 Total: 43.09 kcal Total: -77.54 3.60 -73.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428338646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.988 kcal (2) G-P(sol) polarization free energy of solvation -77.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds