Wall clock time and date at job start Fri Apr 10 2020 22:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 H 1.09001 * 109.47085 * 55.00250 * 3 2 1 5 5 N 1.46900 * 109.47148 * 295.00060 * 3 2 1 6 6 C 1.46896 * 111.00195 * 154.99709 * 5 3 2 7 7 C 1.50697 * 109.47382 * 179.97438 * 6 5 3 8 8 C 1.38284 * 119.97210 * 269.97968 * 7 6 5 9 9 C 1.38250 * 120.10839 * 180.02562 * 8 7 6 10 10 C 1.38161 * 120.05581 * 359.68103 * 9 8 7 11 11 C 1.38710 * 119.94432 * 0.61525 * 10 9 8 12 12 O 1.35900 * 120.05544 * 179.67631 * 11 10 9 13 13 C 1.42898 * 117.00172 * 359.72769 * 12 11 10 14 14 C 1.52997 * 109.47319 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 C 1.38129 * 119.97079 * 90.00085 * 7 6 5 24 24 C 1.52998 * 109.47084 * 174.99908 * 3 2 1 25 25 F 1.39897 * 109.47576 * 300.00157 * 24 3 2 26 26 F 1.39901 * 109.46997 * 60.00137 * 24 3 2 27 27 H 1.09003 * 109.47451 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47245 * 300.00051 * 1 2 3 29 29 H 1.08997 * 109.47418 * 59.99774 * 1 2 3 30 30 H 1.09000 * 109.47245 * 239.99949 * 2 1 3 31 31 H 1.09000 * 109.47057 * 119.99873 * 2 1 3 32 32 H 1.00903 * 110.99490 * 31.04411 * 5 3 2 33 33 H 1.09005 * 109.46944 * 59.99947 * 6 5 3 34 34 H 1.09002 * 109.47398 * 300.00389 * 6 5 3 35 35 H 1.07994 * 119.94418 * 0.02562 * 8 7 6 36 36 H 1.08002 * 119.97138 * 179.97438 * 9 8 7 37 37 H 1.08006 * 120.02996 * 180.29325 * 10 9 8 38 38 H 1.09002 * 109.47259 * 300.00149 * 13 12 11 39 39 H 1.09001 * 109.47074 * 60.00171 * 13 12 11 40 40 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 41 41 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 42 42 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 43 43 H 1.07999 * 120.02419 * 359.97438 * 23 7 6 44 44 H 1.09003 * 109.47273 * 179.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6514 2.0993 -1.2552 6 6 1.5725 3.5562 -1.0846 7 6 1.1728 4.1940 -2.3902 8 6 2.1438 4.5849 -3.2938 9 6 1.7803 5.1708 -4.4922 10 6 0.4452 5.3610 -4.7925 11 6 -0.5304 4.9753 -3.8851 12 8 -1.8440 5.1674 -4.1754 13 6 -2.1485 5.7777 -5.4311 14 6 -3.6655 5.9099 -5.5795 15 6 -3.9866 6.5529 -6.9040 16 1 -3.1885 6.8384 -7.5733 17 6 -5.2993 6.7759 -7.2620 18 7 -6.2712 6.4278 -6.4472 19 14 -5.6973 7.5737 -8.9035 20 1 -4.4357 7.8683 -9.6293 21 1 -6.5300 6.6492 -9.7142 22 1 -6.4424 8.8370 -8.6721 23 6 -0.1631 4.3879 -2.6830 24 6 3.5648 1.4443 0.1257 25 9 3.9350 0.8188 1.3211 26 9 4.1226 0.7524 -0.9547 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.7798 1.7282 -1.6026 33 1 2.5455 3.9391 -0.7765 34 1 0.8307 3.7931 -0.3219 35 1 3.1877 4.4324 -3.0631 36 1 2.5405 5.4757 -5.1961 37 1 0.1616 5.8144 -5.7309 38 1 -1.6913 6.7663 -5.4750 39 1 -1.7571 5.1602 -6.2396 40 1 -4.1223 4.9212 -5.5358 41 1 -4.0573 6.5271 -4.7711 42 1 -7.1948 6.5843 -6.6992 43 1 -0.9209 4.0823 -1.9768 44 1 3.9282 2.4719 0.1253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449360010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:32 Heat of formation + Delta-G solvation = -154.825639 kcal Electronic energy + Delta-G solvation = -25147.728965 eV Core-core repulsion = 21120.322024 eV Total energy + Delta-G solvation = -4027.406942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.81296 -47.79717 -41.08882 -39.14892 -37.91691 -35.49120 -34.17724 -32.58789 -31.63648 -30.55520 -29.28027 -27.09263 -26.11192 -24.56402 -23.47008 -23.30994 -21.65490 -21.44826 -19.17569 -18.35656 -18.24155 -18.04841 -17.51138 -16.98233 -16.93960 -16.84297 -16.52526 -16.31182 -16.07892 -15.31738 -14.70312 -14.46751 -14.42777 -14.35006 -14.22390 -14.16658 -14.12401 -13.99687 -13.57327 -13.26632 -13.05371 -13.01895 -12.92336 -12.61980 -12.54671 -12.41344 -12.20748 -11.86946 -11.77547 -11.60222 -11.56145 -11.48880 -11.36789 -10.63944 -9.88537 -9.51466 -9.08712 -8.28095 -6.41591 0.33190 0.55179 1.40469 1.41211 1.54726 2.26328 2.50136 2.63196 2.89258 3.06491 3.24469 3.40126 3.49668 3.80304 3.91864 4.00418 4.13988 4.18374 4.22679 4.23927 4.25777 4.34846 4.40148 4.44471 4.57254 4.57938 4.67269 4.71476 4.72926 4.80930 5.04685 5.11513 5.12669 5.30873 5.31249 5.43250 5.45578 5.53676 5.63359 5.67611 5.82642 5.93564 6.06989 6.20533 6.57071 6.73403 7.28649 8.85237 Molecular weight = 313.16amu Principal moments of inertia in cm(-1) A = 0.025635 B = 0.002144 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.011832 B =13056.520203 C =13789.945385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C 0.042 3.958 4 H 0.092 0.908 5 N -0.681 5.681 6 C 0.100 3.900 7 C -0.046 4.046 8 C -0.139 4.139 9 C -0.081 4.081 10 C -0.222 4.222 11 C 0.105 3.895 12 O -0.342 6.342 13 C 0.086 3.914 14 C 0.028 3.972 15 C -0.545 4.545 16 H 0.070 0.930 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.976 3.024 20 H -0.258 1.258 21 H -0.277 1.277 22 H -0.276 1.276 23 C -0.161 4.161 24 C 0.265 3.735 25 F -0.215 7.215 26 F -0.211 7.211 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.356 0.644 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.124 0.876 38 H 0.059 0.941 39 H 0.058 0.942 40 H -0.002 1.002 41 H -0.001 1.001 42 H 0.267 0.733 43 H 0.126 0.874 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.522 -8.936 14.452 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C -0.069 4.069 4 H 0.110 0.890 5 N -0.316 5.316 6 C -0.028 4.028 7 C -0.047 4.047 8 C -0.157 4.157 9 C -0.099 4.099 10 C -0.241 4.241 11 C 0.060 3.940 12 O -0.256 6.256 13 C 0.011 3.989 14 C -0.009 4.009 15 C -0.583 4.583 16 H 0.088 0.912 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.799 3.201 20 H -0.182 1.182 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.180 4.180 24 C 0.211 3.789 25 F -0.197 7.197 26 F -0.193 7.193 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.178 0.822 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.142 0.858 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.076 0.924 43 H 0.144 0.856 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 21.814 -9.010 14.343 27.618 hybrid contribution -1.551 0.396 -0.539 1.689 sum 20.263 -8.614 13.804 25.988 Atomic orbital electron populations 1.21798 0.94412 1.02884 1.02054 1.21652 0.97078 0.94420 1.03469 1.22551 0.92957 0.97598 0.93778 0.89002 1.60316 1.40100 1.03650 1.27491 1.21046 1.02585 0.86790 0.92344 1.19615 0.91107 0.97145 0.96806 1.21185 1.00261 1.00517 0.93764 1.21239 0.94603 0.96547 0.97473 1.21504 0.94449 1.07401 1.00761 1.19502 0.83014 0.96218 0.95309 1.86074 1.22860 1.76861 1.39853 1.22831 0.97980 0.95985 0.82061 1.18964 0.89340 0.96043 0.96551 1.21421 0.93036 1.40828 1.02986 0.91186 1.26043 0.96057 0.95993 1.01653 1.70126 1.00147 1.48197 1.38539 0.85236 0.78684 0.77951 0.78190 1.18159 1.20227 1.20195 1.20451 0.97018 1.04770 0.95809 1.22150 0.93462 0.93284 0.70044 1.92949 1.92878 1.85806 1.48045 1.92952 1.87140 1.82618 1.56563 0.91564 0.91885 0.92788 0.91342 0.90186 0.82185 0.87836 0.92612 0.83361 0.83434 0.85802 0.92298 0.92380 0.98337 0.98302 0.92428 0.85555 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.74 71.98 0.70 -1.16 16 2 C -0.13 -1.66 5.28 30.59 0.16 -1.49 16 3 C 0.04 0.50 2.26 44.92 0.10 0.60 16 4 H 0.09 0.83 7.80 -2.39 -0.02 0.82 16 5 N -0.68 -9.85 6.22 -495.58 -3.08 -12.93 16 6 C 0.10 1.38 5.61 85.56 0.48 1.86 16 7 C -0.05 -0.96 5.39 -19.88 -0.11 -1.07 16 8 C -0.14 -2.78 9.70 22.28 0.22 -2.56 16 9 C -0.08 -1.85 10.04 22.25 0.22 -1.63 16 10 C -0.22 -6.65 9.04 22.36 0.20 -6.45 16 11 C 0.10 3.57 6.69 22.50 0.15 3.72 16 12 O -0.34 -14.39 10.14 -92.43 -0.94 -15.33 16 13 C 0.09 3.76 4.68 71.98 0.34 4.10 16 14 C 0.03 1.54 5.34 29.85 0.16 1.70 16 15 C -0.54 -30.74 9.11 25.60 0.23 -30.51 16 16 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 17 C 0.00 0.06 5.46 84.65 0.46 0.52 16 18 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 19 Si 0.98 43.39 29.54 68.60 2.03 45.42 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 C -0.16 -4.45 9.64 22.37 0.22 -4.23 16 24 C 0.26 3.45 5.00 71.98 0.36 3.81 16 25 F -0.22 -3.37 16.73 44.97 0.75 -2.62 16 26 F -0.21 -4.01 16.83 44.97 0.76 -3.25 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.71 6.43 -2.39 -0.02 0.70 16 30 H 0.07 1.07 7.94 -2.39 -0.02 1.05 16 31 H 0.08 1.00 7.66 -2.39 -0.02 0.98 16 32 H 0.36 5.68 6.46 -89.69 -0.58 5.10 16 33 H 0.10 0.99 7.38 -2.38 -0.02 0.97 16 34 H 0.06 0.69 8.00 -2.39 -0.02 0.67 16 35 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.12 3.74 6.30 -2.91 -0.02 3.73 16 38 H 0.06 2.43 7.67 -2.39 -0.02 2.42 16 39 H 0.06 2.41 7.65 -2.39 -0.02 2.39 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.10 16 42 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.13 1.01 7.45 -2.39 -0.02 0.99 16 Total: -1.00 -67.55 370.58 4.12 -63.44 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.42 Total: 14.27 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 3.90 Total: -32.78 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -2.80 Total: -69.15 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.94 Total: -15.33 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 1.51 Total: -5.87 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -67.55 4.12 -63.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449360010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.389 kcal (2) G-P(sol) polarization free energy of solvation -67.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds