Wall clock time and date at job start Fri Apr 10 2020 22:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47226 * 2 1 4 4 N 1.46499 * 109.47356 * 185.73010 * 3 2 1 5 5 C 1.36839 * 119.99820 * 88.31087 * 4 3 2 6 6 H 1.08002 * 119.99829 * 164.49437 * 5 4 3 7 7 C 1.39050 * 120.00371 * 344.50312 * 5 4 3 8 8 N 1.31364 * 119.99730 * 358.94428 * 7 5 4 9 9 Si 1.86796 * 120.00227 * 178.94934 * 7 5 4 10 10 H 1.48498 * 109.47522 * 59.99620 * 9 7 5 11 11 H 1.48502 * 109.47393 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47264 * 299.99573 * 9 7 5 13 13 C 1.34771 * 120.00334 * 268.31583 * 4 3 2 14 14 O 1.21670 * 120.00490 * 185.10139 * 13 4 3 15 15 C 1.47060 * 120.00002 * 5.09634 * 13 4 3 16 16 C 1.38296 * 126.77926 * 9.00152 * 15 13 4 17 17 C 1.40657 * 105.28802 * 180.26358 * 16 15 13 18 18 C 1.48454 * 126.20223 * 179.97438 * 17 16 15 19 19 C 1.39305 * 120.11508 * 359.72657 * 18 17 16 20 20 C 1.38028 * 119.87430 * 179.72139 * 19 18 17 21 21 C 1.38317 * 120.12168 * 0.55445 * 20 19 18 22 22 C 1.38320 * 120.23377 * 359.71840 * 21 20 19 23 23 C 1.38023 * 120.11841 * 0.02562 * 22 21 20 24 24 N 1.31652 * 107.59091 * 0.02562 * 17 16 15 25 25 N 1.28419 * 110.82164 * 359.97438 * 24 17 16 26 26 C 1.46495 * 125.06855 * 180.02562 * 25 24 17 27 27 H 1.08997 * 109.47222 * 65.14355 * 1 2 3 28 28 H 1.09002 * 109.46642 * 185.14467 * 1 2 3 29 29 H 1.09001 * 109.47009 * 305.14035 * 1 2 3 30 30 H 1.09003 * 109.47367 * 239.99467 * 2 1 3 31 31 H 1.09002 * 109.47435 * 119.99676 * 2 1 3 32 32 H 1.09002 * 109.47148 * 65.73005 * 3 2 1 33 33 H 1.08997 * 109.46763 * 305.73275 * 3 2 1 34 34 H 0.96999 * 120.00321 * 180.02562 * 8 7 5 35 35 H 1.08000 * 127.35875 * 0.24143 * 16 15 13 36 36 H 1.08004 * 120.06552 * 359.97383 * 19 18 17 37 37 H 1.08013 * 119.93842 * 180.29560 * 20 19 18 38 38 H 1.08000 * 119.88396 * 179.70336 * 21 20 19 39 39 H 1.08003 * 119.93627 * 180.02562 * 22 21 20 40 40 H 1.08004 * 120.05921 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.47619 * 272.01241 * 26 25 24 42 42 H 1.09008 * 109.46954 * 32.01406 * 26 25 24 43 43 H 1.08996 * 109.47140 * 152.01432 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4985 1.4448 -0.1379 5 6 4.0680 1.4504 -1.3821 6 1 5.1120 1.7022 -1.4970 7 6 3.3028 1.1322 -2.4986 8 7 2.0382 0.8059 -2.3568 9 14 4.0728 1.1684 -4.2000 10 1 5.2022 0.2056 -4.2529 11 1 3.0540 0.7916 -5.2127 12 1 4.5746 2.5362 -4.4873 13 6 4.2793 1.4414 0.9606 14 8 5.4871 1.5370 0.8489 15 6 3.6715 1.3221 2.2944 16 6 2.3490 1.0344 2.5790 17 6 2.2627 1.0370 3.9829 18 6 1.0414 0.7802 4.7868 19 6 -0.1689 0.5096 4.1523 20 6 -1.3001 0.2659 4.9046 21 6 -1.2361 0.3013 6.2859 22 6 -0.0381 0.5750 6.9208 23 6 1.1003 0.8150 6.1781 24 7 3.4612 1.3095 4.4547 25 7 4.3006 1.4800 3.4978 26 6 5.7206 1.7962 3.6701 27 1 -0.3633 0.4320 -0.9324 28 1 -0.3633 -1.0236 0.0922 29 1 -0.3633 0.5915 0.8404 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.7629 1.9259 0.9369 33 1 1.5953 1.9850 -0.8342 34 1 1.5044 0.5835 -3.1355 35 1 1.5525 0.8480 1.8738 36 1 -0.2211 0.4865 3.0738 37 1 -2.2381 0.0513 4.4138 38 1 -2.1247 0.1147 6.8707 39 1 0.0065 0.6011 7.9996 40 1 2.0353 1.0283 6.6748 41 1 5.8472 2.8770 3.7331 42 1 6.0873 1.3334 4.5864 43 1 6.2839 1.4135 2.8191 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449796288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:36 Heat of formation + Delta-G solvation = 104.922350 kcal Electronic energy + Delta-G solvation = -26398.642032 eV Core-core repulsion = 22833.187794 eV Total energy + Delta-G solvation = -3565.454237 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.00262 -38.83491 -38.46736 -35.75021 -33.39732 -32.61865 -31.62137 -30.87407 -30.52816 -29.91844 -26.36554 -25.94034 -24.83998 -22.86328 -22.62434 -21.47585 -20.75845 -20.48173 -18.77878 -17.17751 -16.70414 -16.17206 -15.97229 -15.68191 -15.23159 -14.71203 -14.46601 -14.22468 -13.90320 -13.67172 -13.35347 -13.26239 -12.97545 -12.82482 -12.59492 -12.24966 -12.16557 -11.86219 -11.77292 -11.34554 -11.15613 -11.04860 -11.02177 -10.74760 -10.50979 -10.47984 -10.26124 -9.92055 -9.85851 -9.54634 -8.92773 -8.82867 -8.66881 -8.32775 -7.90431 -7.73828 -6.36567 -3.98402 1.20971 1.52807 2.02867 2.93793 3.08267 3.15928 3.16710 3.20957 3.98660 4.10527 4.20555 4.56330 4.81274 4.96582 5.03816 5.05362 5.18310 5.27449 5.47433 5.52598 5.58060 5.61825 5.77431 5.93552 5.98481 6.01551 6.04314 6.08607 6.21653 6.23095 6.31955 6.38475 6.53282 6.60381 6.68666 6.76404 6.85786 6.96852 6.97784 7.10775 7.27717 7.28538 7.44848 7.75836 7.93197 8.34623 8.54511 9.00109 9.23385 9.79121 10.49750 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.004437 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.348653 B = 6308.425554 C = 7896.211825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.106 3.894 4 N -0.409 5.409 5 C -0.295 4.295 6 H 0.106 0.894 7 C 0.028 3.972 8 N -0.863 5.863 9 Si 0.936 3.064 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.493 3.507 14 O -0.600 6.600 15 C 0.009 3.991 16 C -0.218 4.218 17 C 0.043 3.957 18 C 0.013 3.987 19 C -0.104 4.104 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.103 4.103 24 N -0.288 5.288 25 N -0.265 5.265 26 C 0.088 3.912 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.107 0.893 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.269 0.731 35 H 0.190 0.810 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 -0.684 10.639 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C -0.017 4.017 4 N -0.124 5.124 5 C -0.423 4.423 6 H 0.123 0.877 7 C -0.175 4.175 8 N -0.503 5.503 9 Si 0.762 3.238 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.281 3.719 14 O -0.488 6.488 15 C -0.118 4.118 16 C -0.245 4.245 17 C -0.112 4.112 18 C 0.011 3.989 19 C -0.124 4.124 20 C -0.136 4.136 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.123 4.123 24 N -0.121 5.121 25 N -0.052 5.052 26 C -0.053 4.053 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.125 0.875 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.207 0.793 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.356 -0.479 11.389 12.595 hybrid contribution -0.176 -0.126 -1.458 1.474 sum -5.532 -0.604 9.931 11.384 Atomic orbital electron populations 1.21603 0.97107 0.99766 1.00921 1.22086 0.94351 0.97925 1.02295 1.22239 0.80443 0.97903 1.01117 1.43485 1.05666 1.58852 1.04413 1.19793 0.97470 1.43626 0.81414 0.87664 1.25401 0.95801 0.95944 1.00358 1.70174 1.06321 1.43492 1.30322 0.85838 0.78576 0.79034 0.80355 1.19789 1.20752 1.19824 1.16598 0.86305 0.86964 0.82034 1.90560 1.13733 1.58463 1.86024 1.21861 0.92742 1.08079 0.89135 1.23392 0.96861 1.09107 0.95172 1.20303 0.91301 1.07411 0.92139 1.17813 0.90131 0.98947 0.92027 1.21205 0.91579 0.99104 1.00469 1.21036 0.98190 1.00483 0.93935 1.21140 0.97722 1.01026 0.94743 1.21040 0.92811 1.00638 0.99612 1.21207 0.98716 0.99344 0.92982 1.73134 1.00166 1.20839 1.17950 1.45419 1.09262 1.48392 1.02157 1.22307 0.75259 1.02347 1.05348 0.92162 0.94156 0.94629 0.87550 0.94802 0.92931 0.87364 0.91980 0.79336 0.85390 0.85891 0.86387 0.86241 0.85631 0.90571 0.89862 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.78 37.16 0.36 -1.87 16 2 C -0.13 -2.58 4.40 -26.73 -0.12 -2.70 16 3 C 0.11 2.29 4.09 -4.04 -0.02 2.27 16 4 N -0.41 -10.16 2.62 -116.17 -0.30 -10.47 16 5 C -0.29 -7.70 9.47 -15.02 -0.14 -7.84 16 6 H 0.11 2.88 7.24 -52.49 -0.38 2.50 16 7 C 0.03 0.68 5.33 -17.45 -0.09 0.59 16 8 N -0.86 -20.09 7.27 55.50 0.40 -19.69 16 9 Si 0.94 19.39 29.55 -169.99 -5.02 14.37 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 13 C 0.49 12.21 7.59 -12.69 -0.10 12.11 16 14 O -0.60 -15.95 14.24 5.22 0.07 -15.88 16 15 C 0.01 0.21 6.75 -82.09 -0.55 -0.35 16 16 C -0.22 -4.28 7.05 -38.65 -0.27 -4.55 16 17 C 0.04 0.81 6.99 -82.82 -0.58 0.23 16 18 C 0.01 0.20 5.88 -104.89 -0.62 -0.42 16 19 C -0.10 -1.45 9.58 -39.26 -0.38 -1.82 16 20 C -0.12 -1.38 10.03 -39.63 -0.40 -1.77 16 21 C -0.13 -1.38 10.04 -39.52 -0.40 -1.78 16 22 C -0.12 -1.42 10.03 -39.63 -0.40 -1.82 16 23 C -0.10 -1.45 9.69 -39.26 -0.38 -1.83 16 24 N -0.29 -5.50 11.58 33.40 0.39 -5.11 16 25 N -0.27 -5.23 3.75 -63.92 -0.24 -5.47 16 26 C 0.09 1.41 10.96 59.84 0.66 2.07 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.51 7.11 -51.93 -0.37 0.14 16 30 H 0.11 2.45 5.96 -51.93 -0.31 2.14 16 31 H 0.03 0.68 6.23 -51.93 -0.32 0.36 16 32 H 0.05 1.07 4.62 -51.93 -0.24 0.83 16 33 H 0.11 2.50 6.12 -51.93 -0.32 2.18 16 34 H 0.27 5.99 8.31 -40.82 -0.34 5.65 16 35 H 0.19 3.50 2.18 -52.49 -0.11 3.39 16 36 H 0.13 1.72 6.50 -52.48 -0.34 1.38 16 37 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 40 H 0.13 1.73 7.86 -52.48 -0.41 1.32 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 43 H 0.12 2.11 6.04 -51.93 -0.31 1.79 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -28.65 342.91 -8.17 -36.82 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.22 Total: 9.76 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -3.42 Total: -9.49 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.25 Total: -40.74 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.07 Total: -15.88 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.65 -8.17 -36.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449796288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.738 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds