Wall clock time and date at job start Fri Apr 10 2020 22:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47491 * 2 1 4 4 H 1.09000 * 109.46971 * 54.99863 * 3 2 1 5 5 C 1.50701 * 109.47415 * 175.00211 * 3 2 1 6 6 H 1.08002 * 119.99633 * 119.99687 * 5 3 2 7 7 C 1.37870 * 119.99850 * 300.00290 * 5 3 2 8 8 N 1.31519 * 119.99907 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47153 * 59.99758 * 9 7 5 11 11 H 1.48497 * 109.47065 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46930 * 299.99799 * 9 7 5 13 13 N 1.46503 * 109.47024 * 295.00551 * 3 2 1 14 14 C 1.34775 * 120.00461 * 84.99737 * 13 3 2 15 15 O 1.21623 * 119.99754 * 5.30523 * 14 13 3 16 16 C 1.47194 * 120.00410 * 185.31104 * 14 13 3 17 17 C 1.38182 * 126.77162 * 5.08556 * 16 14 13 18 18 C 1.40670 * 105.30280 * 180.02562 * 17 16 14 19 19 C 1.48451 * 126.21434 * 180.26274 * 18 17 16 20 20 C 1.39308 * 120.11871 * 359.43721 * 19 18 17 21 21 C 1.38024 * 119.88264 * 179.77062 * 20 19 18 22 22 C 1.38312 * 120.11661 * 0.48241 * 21 20 19 23 23 C 1.38318 * 120.24049 * 359.79223 * 22 21 20 24 24 C 1.38023 * 120.11577 * 359.95101 * 23 22 21 25 25 N 1.31637 * 107.57526 * 0.02562 * 18 17 16 26 26 N 1.28425 * 110.79446 * 359.97438 * 25 18 17 27 27 C 1.46497 * 125.06175 * 180.02562 * 26 25 18 28 28 H 1.09002 * 109.47511 * 59.99648 * 1 2 3 29 29 H 1.09001 * 109.47658 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46904 * 299.99914 * 1 2 3 31 31 H 1.09006 * 109.46904 * 240.00086 * 2 1 3 32 32 H 1.09002 * 109.47511 * 120.00352 * 2 1 3 33 33 H 0.97008 * 119.99350 * 180.02562 * 8 7 5 34 34 H 0.97006 * 119.99794 * 264.99984 * 13 3 2 35 35 H 1.08000 * 127.34663 * 0.02562 * 17 16 14 36 36 H 1.08002 * 120.05402 * 0.02562 * 20 19 18 37 37 H 1.07995 * 119.94034 * 180.27512 * 21 20 19 38 38 H 1.07999 * 119.88436 * 179.76841 * 22 21 20 39 39 H 1.07999 * 119.94497 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.06064 * 180.02562 * 24 23 22 41 41 H 1.09002 * 109.47357 * 85.11397 * 27 26 25 42 42 H 1.09006 * 109.46717 * 205.11388 * 27 26 25 43 43 H 1.08998 * 109.47329 * 325.11097 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8783 1.2278 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8811 1.3816 10 1 6.4995 2.2813 1.3820 11 1 6.3978 0.2175 2.6507 12 1 6.5975 0.1472 0.2347 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3045 2.7177 -0.4029 16 6 0.0007 3.2190 -2.6593 17 6 0.6803 3.1479 -3.8604 18 6 -0.1354 3.8197 -4.7889 19 6 0.1542 4.0134 -6.2319 20 6 1.3343 3.5168 -6.7809 21 6 1.5965 3.6956 -8.1241 22 6 0.6946 4.3752 -8.9228 23 6 -0.4760 4.8753 -8.3817 24 6 -0.7505 4.6975 -7.0408 25 7 -1.2047 4.2408 -4.1469 26 7 -1.1539 3.9065 -2.9080 27 6 -2.1808 4.2159 -1.9100 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8293 -0.0606 2.9501 34 1 2.2719 2.1231 -1.9978 35 1 1.6343 2.6771 -4.0465 36 1 2.0409 2.9893 -6.1573 37 1 2.5090 3.3072 -8.5516 38 1 0.9052 4.5161 -9.9726 39 1 -1.1767 5.4055 -9.0097 40 1 -1.6650 5.0880 -6.6194 41 1 -2.9595 3.4538 -1.9416 42 1 -1.7296 4.2335 -0.9179 43 1 -2.6173 5.1906 -2.1279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450624836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:40 Heat of formation + Delta-G solvation = 57.685632 kcal Electronic energy + Delta-G solvation = -25267.069489 eV Core-core repulsion = 21699.566914 eV Total energy + Delta-G solvation = -3567.502575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.40259 -39.11712 -38.77333 -35.25929 -33.80162 -32.59627 -31.53500 -31.05748 -30.74763 -30.12021 -27.09508 -26.61731 -23.77531 -23.14688 -22.79595 -22.01100 -20.80672 -19.59551 -19.37840 -18.06904 -16.67212 -16.25706 -16.18033 -15.68969 -15.56476 -15.12887 -14.65169 -14.40800 -14.19680 -13.78195 -13.56537 -13.42700 -13.24689 -13.17559 -12.74594 -12.54098 -12.32305 -12.17664 -11.59919 -11.41741 -11.32487 -11.27000 -11.04737 -10.87432 -10.65630 -10.38697 -10.26342 -9.86897 -9.73795 -9.34909 -9.12865 -9.03955 -8.96799 -8.57181 -8.17810 -7.95829 -6.18066 -4.27841 0.95576 1.31735 1.53810 2.50735 2.75628 3.23117 3.28687 3.29739 3.71233 3.86930 3.89704 4.29611 4.36569 4.68181 4.86210 4.92839 5.02220 5.13273 5.17415 5.22373 5.31160 5.36843 5.46310 5.53818 5.64948 5.78436 5.85690 5.97397 6.25138 6.30131 6.35098 6.39810 6.47341 6.53909 6.55506 6.82032 6.87211 6.95001 7.08517 7.23592 7.29406 7.52476 7.63417 7.80741 8.08226 8.09209 8.50479 8.67127 8.92690 9.39234 10.87304 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.003335 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.422274 B = 8394.734775 C = 9746.883911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.054 0.946 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.687 5.687 14 C 0.575 3.425 15 O -0.549 6.549 16 C -0.017 4.017 17 C -0.181 4.181 18 C 0.054 3.946 19 C 0.004 3.996 20 C -0.102 4.102 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.100 4.100 25 N -0.274 5.274 26 N -0.255 5.255 27 C 0.084 3.916 28 H 0.034 0.966 29 H 0.026 0.974 30 H 0.050 0.950 31 H 0.033 0.967 32 H 0.102 0.898 33 H 0.266 0.734 34 H 0.392 0.608 35 H 0.162 0.838 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 6.426 -16.744 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.334 5.334 14 C 0.359 3.641 15 O -0.428 6.428 16 C -0.146 4.146 17 C -0.210 4.210 18 C -0.100 4.100 19 C 0.002 3.998 20 C -0.122 4.122 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.119 4.119 25 N -0.108 5.108 26 N -0.042 5.042 27 C -0.055 4.055 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.225 0.775 35 H 0.179 0.821 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.102 0.898 42 H 0.136 0.864 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.178 6.935 -15.793 19.089 hybrid contribution 1.919 -0.481 -0.140 1.983 sum -6.259 6.454 -15.933 18.295 Atomic orbital electron populations 1.21827 0.98505 0.98399 1.00875 1.21957 0.92493 0.99652 1.02618 1.18891 0.94504 0.89114 0.80440 0.92858 1.21165 0.90460 1.39375 1.06501 0.91966 1.24869 0.98713 0.94666 0.95289 1.69879 1.35314 1.37413 1.09314 0.86494 0.84669 0.78383 0.77507 1.20133 1.21117 1.20072 1.46307 1.13409 1.54663 1.19050 1.16889 0.83369 0.78910 0.84938 1.90735 1.54157 1.59241 1.38715 1.21857 0.90651 1.04734 0.97316 1.22161 1.02095 1.05876 0.90854 1.20242 0.92993 1.03030 0.93782 1.17773 0.94879 0.98611 0.88507 1.21154 0.96201 0.99480 0.95348 1.21054 0.99649 0.99415 0.93552 1.21192 0.94588 0.98582 0.99793 1.21074 0.97476 1.00422 0.95030 1.21216 0.99253 0.98013 0.93413 1.73248 1.23668 1.22042 0.91829 1.45522 1.15440 1.37086 1.06163 1.22407 0.89728 1.02505 0.90902 0.94717 0.95497 0.93054 0.94768 0.87978 0.92417 0.77469 0.82069 0.85391 0.85744 0.86187 0.86023 0.85500 0.89824 0.86400 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.58 37.16 0.32 -2.65 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.54 2.25 -69.08 -0.16 6.38 16 4 H 0.05 1.48 7.51 -51.93 -0.39 1.09 16 5 C -0.54 -13.66 8.73 -34.44 -0.30 -13.96 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.95 11.29 55.43 0.63 -23.32 16 9 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.69 -13.80 5.00 -56.08 -0.28 -14.08 16 14 C 0.58 11.23 6.15 -12.62 -0.08 11.16 16 15 O -0.55 -11.86 12.20 5.26 0.06 -11.79 16 16 C -0.02 -0.29 6.94 -82.10 -0.57 -0.86 16 17 C -0.18 -2.71 9.84 -38.68 -0.38 -3.09 16 18 C 0.05 0.80 6.99 -82.82 -0.58 0.22 16 19 C 0.00 0.05 5.88 -104.89 -0.62 -0.57 16 20 C -0.10 -1.13 9.58 -39.26 -0.38 -1.50 16 21 C -0.12 -1.11 10.03 -39.63 -0.40 -1.51 16 22 C -0.12 -1.09 10.04 -39.52 -0.40 -1.49 16 23 C -0.12 -1.16 10.03 -39.63 -0.40 -1.56 16 24 C -0.10 -1.15 9.69 -39.26 -0.38 -1.54 16 25 N -0.27 -4.27 11.58 33.40 0.39 -3.88 16 26 N -0.26 -4.01 3.75 -63.92 -0.24 -4.25 16 27 C 0.08 1.07 10.90 59.85 0.65 1.72 16 28 H 0.03 0.72 5.76 -51.93 -0.30 0.42 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 1.15 7.92 -51.93 -0.41 0.74 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.39 6.91 7.60 -40.82 -0.31 6.60 16 35 H 0.16 1.99 6.99 -52.49 -0.37 1.63 16 36 H 0.13 1.24 7.10 -52.49 -0.37 0.87 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.13 1.44 7.86 -52.49 -0.41 1.03 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.12 1.65 6.13 -51.93 -0.32 1.33 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -29.84 356.66 -8.68 -38.51 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.69 Total: 9.10 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -3.90 Total: -10.71 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.49 Total: -45.54 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.06 Total: -11.79 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.84 -8.68 -38.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450624836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.198 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds