Wall clock time and date at job start Fri Apr 10 2020 22:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47491 * 2 1 4 4 H 1.09000 * 109.46971 * 54.99863 * 3 2 1 5 5 C 1.50701 * 109.47415 * 175.00211 * 3 2 1 6 6 H 1.08002 * 119.99633 * 119.99687 * 5 3 2 7 7 C 1.37870 * 119.99850 * 300.00290 * 5 3 2 8 8 N 1.31519 * 119.99907 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47153 * 59.99758 * 9 7 5 11 11 H 1.48497 * 109.47065 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46930 * 299.99799 * 9 7 5 13 13 N 1.46503 * 109.47024 * 295.00551 * 3 2 1 14 14 C 1.34775 * 120.00461 * 84.99737 * 13 3 2 15 15 O 1.21623 * 119.99754 * 5.30523 * 14 13 3 16 16 C 1.47194 * 120.00410 * 185.31104 * 14 13 3 17 17 C 1.38182 * 126.77162 * 5.08556 * 16 14 13 18 18 C 1.40670 * 105.30280 * 180.02562 * 17 16 14 19 19 C 1.48451 * 126.21434 * 180.26274 * 18 17 16 20 20 C 1.39308 * 120.11871 * 359.43721 * 19 18 17 21 21 C 1.38024 * 119.88264 * 179.77062 * 20 19 18 22 22 C 1.38312 * 120.11661 * 0.48241 * 21 20 19 23 23 C 1.38318 * 120.24049 * 359.79223 * 22 21 20 24 24 C 1.38023 * 120.11577 * 359.95101 * 23 22 21 25 25 N 1.31637 * 107.57526 * 0.02562 * 18 17 16 26 26 N 1.28425 * 110.79446 * 359.97438 * 25 18 17 27 27 C 1.46497 * 125.06175 * 180.02562 * 26 25 18 28 28 H 1.09002 * 109.47511 * 59.99648 * 1 2 3 29 29 H 1.09001 * 109.47658 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46904 * 299.99914 * 1 2 3 31 31 H 1.09006 * 109.46904 * 240.00086 * 2 1 3 32 32 H 1.09002 * 109.47511 * 120.00352 * 2 1 3 33 33 H 0.97008 * 119.99350 * 180.02562 * 8 7 5 34 34 H 0.97006 * 119.99794 * 264.99984 * 13 3 2 35 35 H 1.08000 * 127.34663 * 0.02562 * 17 16 14 36 36 H 1.08002 * 120.05402 * 0.02562 * 20 19 18 37 37 H 1.07995 * 119.94034 * 180.27512 * 21 20 19 38 38 H 1.07999 * 119.88436 * 179.76841 * 22 21 20 39 39 H 1.07999 * 119.94497 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.06064 * 180.02562 * 24 23 22 41 41 H 1.09002 * 109.47357 * 85.11397 * 27 26 25 42 42 H 1.09006 * 109.46717 * 205.11388 * 27 26 25 43 43 H 1.08998 * 109.47329 * 325.11097 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8783 1.2278 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8811 1.3816 10 1 6.4995 2.2813 1.3820 11 1 6.3978 0.2175 2.6507 12 1 6.5975 0.1472 0.2347 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3045 2.7177 -0.4029 16 6 0.0007 3.2190 -2.6593 17 6 0.6803 3.1479 -3.8604 18 6 -0.1354 3.8197 -4.7889 19 6 0.1542 4.0134 -6.2319 20 6 1.3343 3.5168 -6.7809 21 6 1.5965 3.6956 -8.1241 22 6 0.6946 4.3752 -8.9228 23 6 -0.4760 4.8753 -8.3817 24 6 -0.7505 4.6975 -7.0408 25 7 -1.2047 4.2408 -4.1469 26 7 -1.1539 3.9065 -2.9080 27 6 -2.1808 4.2159 -1.9100 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8293 -0.0606 2.9501 34 1 2.2719 2.1231 -1.9978 35 1 1.6343 2.6771 -4.0465 36 1 2.0409 2.9893 -6.1573 37 1 2.5090 3.3072 -8.5516 38 1 0.9052 4.5161 -9.9726 39 1 -1.1767 5.4055 -9.0097 40 1 -1.6650 5.0880 -6.6194 41 1 -2.9595 3.4538 -1.9416 42 1 -1.7296 4.2335 -0.9179 43 1 -2.6173 5.1906 -2.1279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450624836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:40 Heat of formation + Delta-G solvation = 40.888385 kcal Electronic energy + Delta-G solvation = -25267.797872 eV Core-core repulsion = 21699.566914 eV Total energy + Delta-G solvation = -3568.230959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.59023 -40.52848 -39.76326 -37.03564 -34.95123 -34.31069 -33.18511 -31.98775 -31.71417 -31.37813 -28.93652 -27.67275 -25.40927 -24.42453 -23.84033 -23.14671 -22.04440 -21.27300 -20.73982 -19.41954 -18.07191 -17.49413 -17.36792 -17.22384 -16.88189 -16.40831 -16.08124 -15.80773 -15.39031 -15.00648 -14.78653 -14.56690 -14.32248 -14.17917 -14.15567 -14.00641 -13.54371 -13.37770 -13.31082 -13.17254 -12.90363 -12.64817 -12.27225 -12.17471 -12.12093 -12.06268 -11.65545 -11.60949 -11.08975 -10.95347 -10.83983 -10.52869 -10.23359 -9.79359 -9.70865 -9.11577 -8.15680 -6.32608 0.08449 0.24123 0.56261 1.35010 1.47809 1.48731 1.56410 1.72253 2.24004 2.32782 2.53322 3.06482 3.14466 3.28479 3.57233 3.88878 4.11010 4.18987 4.22965 4.27319 4.32672 4.43469 4.48408 4.53889 4.54764 4.62611 4.64293 4.73246 4.82298 5.03701 5.05292 5.21907 5.23441 5.31659 5.39934 5.49584 5.51808 5.59449 5.65232 5.66703 5.76795 5.78573 5.87982 6.13154 6.15112 6.72483 6.78418 6.95939 7.27096 7.43273 8.89483 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.003335 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.422274 B = 8394.734775 C = 9746.883911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.282 3.718 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.073 0.927 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.685 5.685 14 C 0.578 3.422 15 O -0.575 6.575 16 C -0.042 4.042 17 C -0.172 4.172 18 C 0.051 3.949 19 C -0.025 4.025 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.113 4.113 25 N -0.280 5.280 26 N -0.260 5.260 27 C 0.081 3.919 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.265 0.735 34 H 0.405 0.595 35 H 0.185 0.815 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.539 6.704 -19.805 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.179 3.821 4 H 0.025 0.975 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.188 1.188 13 N -0.334 5.334 14 C 0.364 3.636 15 O -0.456 6.456 16 C -0.170 4.170 17 C -0.200 4.200 18 C -0.103 4.103 19 C -0.027 4.027 20 C -0.130 4.130 21 C -0.139 4.139 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.132 4.132 25 N -0.114 5.114 26 N -0.048 5.048 27 C -0.058 4.058 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.241 0.759 35 H 0.202 0.798 36 H 0.155 0.845 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.163 0.837 40 H 0.139 0.861 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.174 7.225 -18.887 21.457 hybrid contribution 1.551 -0.502 0.691 1.771 sum -5.623 6.723 -18.196 20.197 Atomic orbital electron populations 1.21666 0.97108 0.99472 0.99986 1.21804 0.93651 0.98953 1.01654 1.18472 0.93876 0.89139 0.80642 0.97500 1.21522 0.91252 1.39185 1.06869 0.90939 1.25707 1.03135 0.94306 0.94974 1.70028 1.37086 1.38206 1.09804 0.85459 0.79286 0.78404 0.77575 1.19800 1.21288 1.18834 1.46011 1.14170 1.54921 1.18253 1.17130 0.82691 0.78162 0.85634 1.90722 1.54784 1.60085 1.40042 1.21508 0.92195 1.06767 0.96531 1.22478 1.02629 1.04979 0.89955 1.20665 0.92443 1.02256 0.94889 1.17902 0.96417 1.00783 0.87588 1.21364 0.95737 0.99448 0.96423 1.21409 1.00654 0.98918 0.92880 1.21609 0.93753 0.97017 1.01225 1.21376 0.98297 1.00193 0.94347 1.21305 0.99068 0.98394 0.94466 1.73253 1.24186 1.22257 0.91730 1.45783 1.15521 1.36879 1.06577 1.22536 0.89302 1.04383 0.89596 0.94445 0.93336 0.95017 0.93871 0.90568 0.92537 0.75923 0.79825 0.84540 0.83228 0.83239 0.83719 0.86133 0.88693 0.88112 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.58 71.98 0.62 -4.80 16 2 C -0.12 -5.78 5.45 30.59 0.17 -5.61 16 3 C 0.28 13.91 2.25 44.24 0.10 14.00 16 4 H 0.01 0.41 7.51 -2.39 -0.02 0.40 16 5 C -0.55 -28.17 8.73 25.60 0.22 -27.95 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 1.01 5.29 84.65 0.45 1.45 16 8 N -0.91 -50.74 11.29 21.45 0.24 -50.50 16 9 Si 0.97 40.99 29.54 68.60 2.03 43.02 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 13 N -0.69 -27.80 5.00 -449.60 -2.25 -30.05 16 14 C 0.58 23.02 6.15 86.60 0.53 23.55 16 15 O -0.57 -25.81 12.20 -4.10 -0.05 -25.86 16 16 C -0.04 -1.42 6.94 40.73 0.28 -1.14 16 17 C -0.17 -4.99 9.84 22.85 0.22 -4.76 16 18 C 0.05 1.49 6.99 42.49 0.30 1.79 16 19 C -0.03 -0.62 5.88 -20.04 -0.12 -0.73 16 20 C -0.11 -2.20 9.58 22.48 0.22 -1.98 16 21 C -0.12 -1.88 10.03 22.24 0.22 -1.65 16 22 C -0.12 -1.67 10.04 22.31 0.22 -1.45 16 23 C -0.12 -2.04 10.03 22.24 0.22 -1.82 16 24 C -0.11 -2.47 9.69 22.48 0.22 -2.26 16 25 N -0.28 -8.61 11.58 -48.24 -0.56 -9.17 16 26 N -0.26 -8.17 3.75 -356.13 -1.33 -9.50 16 27 C 0.08 2.06 10.90 127.77 1.39 3.45 16 28 H 0.04 1.57 5.76 -2.39 -0.01 1.56 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.03 1.46 7.92 -2.38 -0.02 1.44 16 31 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.08 4.05 5.95 -2.39 -0.01 4.04 16 33 H 0.27 14.05 8.31 -92.70 -0.77 13.28 16 34 H 0.41 14.07 7.60 -92.70 -0.70 13.37 16 35 H 0.18 4.24 6.99 -2.91 -0.02 4.22 16 36 H 0.14 2.36 7.10 -2.91 -0.02 2.34 16 37 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.12 2.68 7.86 -2.91 -0.02 2.66 16 41 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.10 2.93 6.13 -2.38 -0.01 2.92 16 43 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -65.55 356.66 3.68 -61.87 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.33 Total: 30.10 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 5.27 Total: -9.90 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -3.90 Total: -99.22 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.86 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -65.55 3.68 -61.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450624836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.754 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds