Wall clock time and date at job start Fri Apr 10 2020 22:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47454 * 2 1 4 4 N 1.46501 * 109.47205 * 180.02562 * 3 2 1 5 5 C 1.36813 * 119.99711 * 264.52413 * 4 3 2 6 6 H 1.08001 * 120.00236 * 138.54091 * 5 4 3 7 7 C 1.39091 * 119.99857 * 318.53745 * 5 4 3 8 8 N 1.31338 * 120.00142 * 161.29995 * 7 5 4 9 9 Si 1.86806 * 120.00089 * 341.29765 * 7 5 4 10 10 H 1.48495 * 109.46933 * 94.29149 * 9 7 5 11 11 H 1.48496 * 109.46997 * 214.29581 * 9 7 5 12 12 H 1.48496 * 109.46759 * 334.29232 * 9 7 5 13 13 C 1.34771 * 119.99971 * 84.52139 * 4 3 2 14 14 O 1.21601 * 120.00468 * 5.28054 * 13 4 3 15 15 C 1.47728 * 119.99683 * 185.27773 * 13 4 3 16 16 C 1.40683 * 119.76063 * 142.65259 * 15 13 4 17 17 C 1.35698 * 120.83101 * 179.97438 * 16 15 13 18 18 C 1.40738 * 120.08924 * 359.97438 * 17 16 15 19 19 N 1.33785 * 120.84888 * 179.97438 * 18 17 16 20 20 C 1.31345 * 119.76465 * 180.02562 * 19 18 17 21 21 C 1.50697 * 119.63940 * 179.72337 * 20 19 18 22 22 C 1.39743 * 120.71579 * 0.02562 * 20 19 18 23 23 C 1.50702 * 119.65722 * 179.97438 * 22 20 19 24 24 N 1.31280 * 120.67320 * 0.02562 * 22 20 19 25 25 C 1.33836 * 119.73703 * 359.95020 * 24 22 20 26 26 C 1.38511 * 119.76791 * 322.63717 * 15 13 4 27 27 H 1.09006 * 109.47147 * 300.00420 * 1 2 3 28 28 H 1.09000 * 109.47259 * 59.99781 * 1 2 3 29 29 H 1.08999 * 109.47605 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46839 * 239.99297 * 2 1 3 31 31 H 1.09004 * 109.46768 * 120.00167 * 2 1 3 32 32 H 1.08999 * 109.46932 * 59.99747 * 3 2 1 33 33 H 1.09001 * 109.46816 * 299.99599 * 3 2 1 34 34 H 0.96994 * 120.00555 * 179.97438 * 8 7 5 35 35 H 1.08000 * 119.58868 * 0.02562 * 16 15 13 36 36 H 1.07995 * 119.95444 * 179.97438 * 17 16 15 37 37 H 1.08999 * 109.47458 * 90.00346 * 21 20 19 38 38 H 1.09001 * 109.46767 * 210.00452 * 21 20 19 39 39 H 1.09000 * 109.47360 * 329.99739 * 21 20 19 40 40 H 1.08992 * 109.47233 * 90.00203 * 23 22 20 41 41 H 1.09007 * 109.46559 * 210.00055 * 23 22 20 42 42 H 1.08999 * 109.47393 * 329.99843 * 23 22 20 43 43 H 1.08006 * 120.25298 * 0.03695 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1896 1.5552 1.1786 6 1 5.0667 0.9499 1.3539 7 6 3.7559 2.4496 2.1516 8 7 4.1584 2.3140 3.3944 9 14 2.6010 3.8436 1.6907 10 1 1.1974 3.4245 1.9339 11 1 2.9115 5.0375 2.5174 12 1 2.7763 4.1771 0.2543 13 6 4.1784 1.3311 -1.1627 14 8 3.5739 1.3274 -2.2178 15 6 5.6510 1.2136 -1.1548 16 6 6.2895 0.3724 -2.0843 17 6 7.6407 0.2486 -2.0966 18 6 8.4235 0.9663 -1.1731 19 7 9.7568 0.8553 -1.1714 20 6 10.4665 1.5345 -0.2997 21 6 11.9677 1.4025 -0.2962 22 6 9.8443 2.3734 0.6287 23 6 10.6819 3.1413 1.6187 24 7 8.5376 2.4986 0.6480 25 6 7.7925 1.8172 -0.2305 26 6 6.3932 1.9326 -0.2325 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6768 1.9562 -0.8900 34 1 3.8564 2.9379 4.0728 35 1 5.6968 -0.1812 -2.7975 36 1 8.1161 -0.4015 -2.8162 37 1 12.3999 2.1510 -0.9604 38 1 12.3434 1.5544 0.7157 39 1 12.2457 0.4067 -0.6413 40 1 10.9498 4.1089 1.1946 41 1 10.1131 3.2917 2.5363 42 1 11.5885 2.5786 1.8413 43 1 5.8994 2.5771 0.4798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517680597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:05 Heat of formation + Delta-G solvation = 34.638376 kcal Electronic energy + Delta-G solvation = -25980.001828 eV Core-core repulsion = 22411.499849 eV Total energy + Delta-G solvation = -3568.501979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.18298 -39.28923 -37.01061 -35.39139 -34.75316 -33.26200 -32.74039 -31.79411 -30.62901 -28.33356 -27.90448 -26.00585 -25.06821 -23.25941 -22.80607 -21.91424 -21.29048 -19.68028 -18.23095 -17.92681 -16.80633 -16.05671 -15.89800 -15.32847 -15.12054 -14.48258 -14.30754 -13.99913 -13.92954 -13.45077 -13.29079 -13.11958 -13.10988 -13.10285 -12.89205 -12.61835 -12.47356 -12.04293 -11.72066 -11.70650 -11.53370 -11.28457 -11.22150 -11.10193 -11.05070 -10.98576 -10.89963 -10.45380 -10.11121 -9.87089 -9.36756 -8.91528 -8.69473 -8.40815 -8.04014 -7.85683 -6.58363 -4.21959 0.51615 0.79724 2.28711 2.82197 3.00454 3.16470 3.23415 3.75918 4.02426 4.10132 4.17371 4.27979 4.41738 4.50028 4.79660 4.88259 4.99179 5.28404 5.37787 5.44773 5.47397 5.48967 5.54536 5.58235 5.60286 5.72360 5.76491 5.83899 5.88101 5.98185 6.02818 6.18849 6.26530 6.30085 6.36962 6.38378 6.47955 6.60887 6.69003 6.81931 6.91269 7.08190 7.26680 7.58427 7.93470 8.04464 8.12279 8.78934 9.16842 9.50547 10.49890 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.004570 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.457245 B = 6124.871335 C = 7367.214089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.101 3.899 4 N -0.450 5.450 5 C -0.356 4.356 6 H 0.109 0.891 7 C 0.072 3.928 8 N -0.848 5.848 9 Si 0.872 3.128 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.259 1.259 13 C 0.518 3.482 14 O -0.589 6.589 15 C -0.089 4.089 16 C -0.052 4.052 17 C -0.111 4.111 18 C 0.086 3.914 19 N -0.434 5.434 20 C 0.101 3.899 21 C -0.102 4.102 22 C 0.090 3.910 23 C -0.103 4.103 24 N -0.407 5.407 25 C 0.069 3.931 26 C -0.018 4.018 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.278 0.722 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.119 -0.825 -3.538 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.022 4.022 4 N -0.169 5.169 5 C -0.483 4.483 6 H 0.126 0.874 7 C -0.137 4.137 8 N -0.481 5.481 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.182 1.182 13 C 0.307 3.693 14 O -0.474 6.474 15 C -0.094 4.094 16 C -0.072 4.072 17 C -0.131 4.131 18 C -0.038 4.038 19 N -0.149 5.149 20 C -0.056 4.056 21 C -0.160 4.160 22 C -0.066 4.066 23 C -0.160 4.160 24 N -0.121 5.121 25 C -0.055 4.055 26 C -0.038 4.038 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.560 -0.813 -3.893 9.439 hybrid contribution -0.632 0.648 0.135 0.915 sum 7.928 -0.165 -3.758 8.775 Atomic orbital electron populations 1.21703 0.96174 1.01162 1.01463 1.21770 0.94999 0.97720 1.02533 1.21725 0.82052 0.96927 1.01455 1.43582 1.04218 1.63130 1.05957 1.19148 1.13955 1.23585 0.91644 0.87399 1.25352 0.96683 0.97098 0.94558 1.69693 1.42614 1.35467 1.00350 0.86982 0.80746 0.82265 0.80162 1.19766 1.21073 1.18240 1.18115 0.86274 0.81027 0.83839 1.90653 1.69551 1.56192 1.31023 1.19976 0.94625 0.98440 0.96341 1.20946 0.93869 0.95855 0.96568 1.20455 0.92751 1.00767 0.99081 1.19596 0.90086 0.97471 0.96671 1.68461 1.05738 1.19702 1.20950 1.22319 0.97941 0.93273 0.92068 1.20779 0.88062 1.03798 1.03330 1.22309 0.91217 0.96454 0.96666 1.20780 0.98329 0.99293 0.97646 1.68547 1.05391 1.18474 1.19715 1.19598 0.95284 0.96510 0.94083 1.22184 0.89539 0.96654 0.95418 0.92944 0.92946 0.92947 0.91952 0.91273 0.91137 0.91327 0.91164 0.84559 0.84653 0.90052 0.89896 0.90323 0.90110 0.89932 0.90092 0.80652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.13 -2.47 6.22 -26.73 -0.17 -2.64 16 3 C 0.10 2.18 3.96 -4.04 -0.02 2.16 16 4 N -0.45 -10.63 2.12 -115.93 -0.25 -10.88 16 5 C -0.36 -8.93 6.65 -15.01 -0.10 -9.03 16 6 H 0.11 2.90 6.57 -52.49 -0.34 2.56 16 7 C 0.07 1.84 5.30 -17.45 -0.09 1.74 16 8 N -0.85 -22.54 13.95 55.50 0.77 -21.77 16 9 Si 0.87 19.84 25.03 -169.99 -4.25 15.59 16 10 H -0.27 -5.90 6.70 56.52 0.38 -5.52 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 13 C 0.52 12.10 7.29 -12.39 -0.09 12.01 16 14 O -0.59 -14.54 16.49 5.28 0.09 -14.45 16 15 C -0.09 -1.88 5.42 -105.00 -0.57 -2.45 16 16 C -0.05 -0.93 9.51 -39.57 -0.38 -1.31 16 17 C -0.11 -1.87 9.95 -39.55 -0.39 -2.26 16 18 C 0.09 1.59 6.59 -84.71 -0.56 1.03 16 19 N -0.43 -7.30 10.37 -6.99 -0.07 -7.37 16 20 C 0.10 1.45 6.80 -82.24 -0.56 0.89 16 21 C -0.10 -0.93 9.77 36.00 0.35 -0.58 16 22 C 0.09 1.39 6.79 -82.26 -0.56 0.83 16 23 C -0.10 -1.09 9.77 36.01 0.35 -0.74 16 24 N -0.41 -7.84 10.37 -7.07 -0.07 -7.92 16 25 C 0.07 1.39 6.58 -84.82 -0.56 0.83 16 26 C -0.02 -0.39 7.72 -38.67 -0.30 -0.69 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.07 1.54 3.80 -51.93 -0.20 1.35 16 33 H 0.07 1.47 7.52 -51.93 -0.39 1.08 16 34 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.14 2.24 8.01 -52.49 -0.42 1.82 16 36 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.56 5.91 -51.93 -0.31 0.26 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.08 0.61 5.91 -51.93 -0.31 0.30 16 43 H 0.18 4.13 5.80 -52.48 -0.30 3.83 16 LS Contribution 350.62 15.07 5.28 5.28 Total: -1.00 -30.15 350.62 -7.42 -37.58 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.66 Total: 6.02 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -3.27 Total: -2.08 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.38 Total: -47.93 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.09 Total: -14.45 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.25 Total: 15.59 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.15 -7.42 -37.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517680597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.215 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds