Wall clock time and date at job start Fri Apr 10 2020 22:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47454 * 2 1 4 4 N 1.46501 * 109.47205 * 180.02562 * 3 2 1 5 5 C 1.36813 * 119.99711 * 264.52413 * 4 3 2 6 6 H 1.08001 * 120.00236 * 138.54091 * 5 4 3 7 7 C 1.39091 * 119.99857 * 318.53745 * 5 4 3 8 8 N 1.31338 * 120.00142 * 161.29995 * 7 5 4 9 9 Si 1.86806 * 120.00089 * 341.29765 * 7 5 4 10 10 H 1.48495 * 109.46933 * 94.29149 * 9 7 5 11 11 H 1.48496 * 109.46997 * 214.29581 * 9 7 5 12 12 H 1.48496 * 109.46759 * 334.29232 * 9 7 5 13 13 C 1.34771 * 119.99971 * 84.52139 * 4 3 2 14 14 O 1.21601 * 120.00468 * 5.28054 * 13 4 3 15 15 C 1.47728 * 119.99683 * 185.27773 * 13 4 3 16 16 C 1.40683 * 119.76063 * 142.65259 * 15 13 4 17 17 C 1.35698 * 120.83101 * 179.97438 * 16 15 13 18 18 C 1.40738 * 120.08924 * 359.97438 * 17 16 15 19 19 N 1.33785 * 120.84888 * 179.97438 * 18 17 16 20 20 C 1.31345 * 119.76465 * 180.02562 * 19 18 17 21 21 C 1.50697 * 119.63940 * 179.72337 * 20 19 18 22 22 C 1.39743 * 120.71579 * 0.02562 * 20 19 18 23 23 C 1.50702 * 119.65722 * 179.97438 * 22 20 19 24 24 N 1.31280 * 120.67320 * 0.02562 * 22 20 19 25 25 C 1.33836 * 119.73703 * 359.95020 * 24 22 20 26 26 C 1.38511 * 119.76791 * 322.63717 * 15 13 4 27 27 H 1.09006 * 109.47147 * 300.00420 * 1 2 3 28 28 H 1.09000 * 109.47259 * 59.99781 * 1 2 3 29 29 H 1.08999 * 109.47605 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46839 * 239.99297 * 2 1 3 31 31 H 1.09004 * 109.46768 * 120.00167 * 2 1 3 32 32 H 1.08999 * 109.46932 * 59.99747 * 3 2 1 33 33 H 1.09001 * 109.46816 * 299.99599 * 3 2 1 34 34 H 0.96994 * 120.00555 * 179.97438 * 8 7 5 35 35 H 1.08000 * 119.58868 * 0.02562 * 16 15 13 36 36 H 1.07995 * 119.95444 * 179.97438 * 17 16 15 37 37 H 1.08999 * 109.47458 * 90.00346 * 21 20 19 38 38 H 1.09001 * 109.46767 * 210.00452 * 21 20 19 39 39 H 1.09000 * 109.47360 * 329.99739 * 21 20 19 40 40 H 1.08992 * 109.47233 * 90.00203 * 23 22 20 41 41 H 1.09007 * 109.46559 * 210.00055 * 23 22 20 42 42 H 1.08999 * 109.47393 * 329.99843 * 23 22 20 43 43 H 1.08006 * 120.25298 * 0.03695 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1896 1.5552 1.1786 6 1 5.0667 0.9499 1.3539 7 6 3.7559 2.4496 2.1516 8 7 4.1584 2.3140 3.3944 9 14 2.6010 3.8436 1.6907 10 1 1.1974 3.4245 1.9339 11 1 2.9115 5.0375 2.5174 12 1 2.7763 4.1771 0.2543 13 6 4.1784 1.3311 -1.1627 14 8 3.5739 1.3274 -2.2178 15 6 5.6510 1.2136 -1.1548 16 6 6.2895 0.3724 -2.0843 17 6 7.6407 0.2486 -2.0966 18 6 8.4235 0.9663 -1.1731 19 7 9.7568 0.8553 -1.1714 20 6 10.4665 1.5345 -0.2997 21 6 11.9677 1.4025 -0.2962 22 6 9.8443 2.3734 0.6287 23 6 10.6819 3.1413 1.6187 24 7 8.5376 2.4986 0.6480 25 6 7.7925 1.8172 -0.2305 26 6 6.3932 1.9326 -0.2325 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6768 1.9562 -0.8900 34 1 3.8564 2.9379 4.0728 35 1 5.6968 -0.1812 -2.7975 36 1 8.1161 -0.4015 -2.8162 37 1 12.3999 2.1510 -0.9604 38 1 12.3434 1.5544 0.7157 39 1 12.2457 0.4067 -0.6413 40 1 10.9498 4.1089 1.1946 41 1 10.1131 3.2917 2.5363 42 1 11.5885 2.5786 1.8413 43 1 5.8994 2.5771 0.4798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517680597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:54:05 Heat of formation + Delta-G solvation = 15.662007 kcal Electronic energy + Delta-G solvation = -25980.824705 eV Core-core repulsion = 22411.499849 eV Total energy + Delta-G solvation = -3569.324856 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.52955 -41.04177 -38.45263 -37.22819 -36.06610 -34.87688 -34.04771 -33.56691 -31.99715 -29.48312 -29.12903 -27.61138 -26.87996 -24.50645 -24.13210 -23.38190 -22.79655 -21.40655 -19.91283 -19.28273 -18.48994 -17.68321 -17.52738 -16.77815 -16.54376 -16.23559 -15.82271 -15.67921 -15.33701 -14.84013 -14.63684 -14.60878 -14.37107 -14.21346 -14.11415 -13.94735 -13.76565 -13.35243 -13.34576 -13.24773 -12.80444 -12.69173 -12.63474 -12.53590 -12.43782 -12.32551 -12.25919 -12.03331 -11.96857 -11.56127 -11.21416 -10.69504 -10.11337 -9.82953 -9.70873 -9.49871 -8.56491 -6.21714 -0.86997 -0.55864 0.83845 1.12912 1.25279 1.37120 1.42332 2.07517 2.12041 2.44921 2.79402 2.95525 2.99997 3.08114 3.22116 3.70846 3.72323 3.89425 4.02835 4.08349 4.12074 4.15110 4.34219 4.37693 4.53424 4.56192 4.59825 4.68904 4.71679 4.84566 4.90446 4.94747 4.95957 5.00489 5.07319 5.08994 5.11306 5.20788 5.26224 5.34765 5.44986 5.47089 5.65829 5.96801 6.14148 6.28828 6.73967 6.83303 7.24162 7.60223 8.55756 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.004570 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.457245 B = 6124.871335 C = 7367.214089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.094 3.906 4 N -0.461 5.461 5 C -0.344 4.344 6 H 0.079 0.921 7 C 0.039 3.961 8 N -0.886 5.886 9 Si 0.918 3.082 10 H -0.249 1.249 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.515 3.485 14 O -0.605 6.605 15 C -0.109 4.109 16 C -0.059 4.059 17 C -0.093 4.093 18 C 0.072 3.928 19 N -0.445 5.445 20 C 0.111 3.889 21 C -0.100 4.100 22 C 0.095 3.905 23 C -0.102 4.102 24 N -0.452 5.452 25 C 0.044 3.956 26 C -0.032 4.032 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.282 0.718 35 H 0.152 0.848 36 H 0.170 0.830 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.122 0.878 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.230 -1.032 -4.178 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.028 4.028 4 N -0.179 5.179 5 C -0.472 4.472 6 H 0.097 0.903 7 C -0.167 4.167 8 N -0.521 5.521 9 Si 0.743 3.257 10 H -0.174 1.174 11 H -0.207 1.207 12 H -0.196 1.196 13 C 0.306 3.694 14 O -0.492 6.492 15 C -0.114 4.114 16 C -0.080 4.080 17 C -0.112 4.112 18 C -0.050 4.050 19 N -0.160 5.160 20 C -0.047 4.047 21 C -0.157 4.157 22 C -0.063 4.063 23 C -0.159 4.159 24 N -0.167 5.167 25 C -0.078 4.078 26 C -0.053 4.053 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.170 0.830 36 H 0.187 0.813 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.625 -1.037 -4.543 11.602 hybrid contribution -0.957 0.734 0.344 1.254 sum 9.669 -0.303 -4.199 10.545 Atomic orbital electron populations 1.21675 0.93009 1.02979 1.02187 1.21703 0.97704 0.95421 1.01518 1.21883 0.80862 0.98861 1.01152 1.43699 1.05188 1.63521 1.05531 1.18829 1.13278 1.23080 0.91998 0.90294 1.25801 0.98077 0.98480 0.94319 1.69748 1.44521 1.36668 1.01182 0.86253 0.80471 0.80068 0.78912 1.17417 1.20682 1.19633 1.18504 0.87349 0.80078 0.83486 1.90613 1.70307 1.56900 1.31354 1.19962 0.93418 1.00138 0.97875 1.21036 0.94654 0.95896 0.96388 1.20774 0.92044 0.99783 0.98552 1.19801 0.91273 0.97344 0.96629 1.68603 1.04623 1.20679 1.22046 1.23308 1.00495 0.90858 0.89998 1.21028 0.83659 1.05037 1.05976 1.23275 0.90349 0.95717 0.96934 1.21014 0.98713 1.00386 0.95822 1.68556 1.07484 1.19984 1.20706 1.19585 0.94806 0.97897 0.95467 1.21817 0.90755 0.97273 0.95426 0.92450 0.91977 0.90629 0.92677 0.92520 0.91450 0.91360 0.90767 0.83015 0.81280 0.87585 0.86763 0.89613 0.87826 0.91122 0.86027 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.91 71.98 0.71 -3.35 16 2 C -0.12 -4.71 6.22 30.59 0.19 -4.52 16 3 C 0.09 4.15 3.96 86.38 0.34 4.49 16 4 N -0.46 -22.73 2.12 -638.96 -1.35 -24.09 16 5 C -0.34 -18.28 6.65 84.12 0.56 -17.73 16 6 H 0.08 4.61 6.57 -2.91 -0.02 4.59 16 7 C 0.04 2.07 5.30 84.97 0.45 2.52 16 8 N -0.89 -49.05 13.95 21.69 0.30 -48.75 16 9 Si 0.92 41.88 25.03 68.60 1.72 43.59 16 10 H -0.25 -10.41 6.70 99.48 0.67 -9.74 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.52 25.20 7.29 86.75 0.63 25.83 16 14 O -0.60 -30.72 16.49 -4.03 -0.07 -30.79 16 15 C -0.11 -4.88 5.42 -20.11 -0.11 -4.99 16 16 C -0.06 -2.19 9.51 22.28 0.21 -1.97 16 17 C -0.09 -3.06 9.95 22.29 0.22 -2.84 16 18 C 0.07 2.66 6.59 40.34 0.27 2.93 16 19 N -0.44 -14.14 10.37 -176.02 -1.82 -15.97 16 20 C 0.11 2.89 6.80 42.99 0.29 3.18 16 21 C -0.10 -1.33 9.77 71.23 0.70 -0.63 16 22 C 0.10 2.77 6.79 43.01 0.29 3.06 16 23 C -0.10 -1.84 9.77 71.24 0.70 -1.15 16 24 N -0.45 -17.89 10.37 -176.29 -1.83 -19.72 16 25 C 0.04 1.86 6.58 40.24 0.26 2.13 16 26 C -0.03 -1.50 7.72 22.86 0.18 -1.33 16 27 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.07 2.97 3.80 -2.39 -0.01 2.96 16 33 H 0.07 2.97 7.52 -2.39 -0.02 2.95 16 34 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.15 4.99 8.01 -2.91 -0.02 4.97 16 36 H 0.17 4.35 8.06 -2.91 -0.02 4.32 16 37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 0.84 5.91 -2.39 -0.01 0.83 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.12 1.19 5.91 -2.39 -0.01 1.18 16 43 H 0.14 7.42 5.80 -2.91 -0.02 7.40 16 Total: -1.00 -70.25 350.62 3.84 -66.41 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 1.00 Total: 23.68 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 5.90 Total: 5.63 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -4.70 Total: -108.52 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.07 Total: -30.79 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.72 Total: 43.59 kcal Total: -70.25 3.84 -66.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517680597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.072 kcal (2) G-P(sol) polarization free energy of solvation -70.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds