Wall clock time and date at job start Fri Apr 10 2020 22:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47018 * 2 1 4 4 N 1.46895 * 109.47443 * 174.87417 * 3 2 1 5 5 C 1.46895 * 111.00401 * 199.71499 * 4 3 2 6 6 C 1.50695 * 109.47340 * 66.04700 * 5 4 3 7 7 H 1.08000 * 119.99828 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00179 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99971 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 119.99819 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47016 * 90.00476 * 10 8 6 12 12 H 1.48506 * 109.47175 * 210.00277 * 10 8 6 13 13 H 1.48499 * 109.47662 * 330.00580 * 10 8 6 14 14 C 1.46901 * 110.99533 * 75.75822 * 4 3 2 15 15 C 1.50708 * 109.47040 * 199.76585 * 14 4 3 16 16 C 1.38284 * 119.97083 * 264.43886 * 15 14 4 17 17 C 1.38245 * 120.11009 * 179.97438 * 16 15 14 18 18 C 1.38162 * 120.05526 * 359.76041 * 17 16 15 19 19 C 1.50703 * 120.02966 * 180.25293 * 18 17 16 20 20 F 1.39901 * 109.46697 * 30.23969 * 19 18 17 21 21 F 1.39894 * 109.46995 * 150.23581 * 19 18 17 22 22 C 1.38711 * 119.94284 * 0.49335 * 18 17 16 23 23 O 1.35905 * 120.05289 * 179.76099 * 22 18 17 24 24 C 1.42901 * 116.99805 * 179.72861 * 23 22 18 25 25 C 1.38125 * 119.97006 * 84.41469 * 15 14 4 26 26 H 1.09007 * 109.46954 * 59.99759 * 1 2 3 27 27 H 1.08999 * 109.47079 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47560 * 299.99869 * 1 2 3 29 29 H 1.09000 * 109.47012 * 240.00899 * 2 1 3 30 30 H 1.08995 * 109.47087 * 119.99786 * 2 1 3 31 31 H 1.09003 * 109.46923 * 54.87343 * 3 2 1 32 32 H 1.09005 * 109.47333 * 294.88225 * 3 2 1 33 33 H 1.09002 * 109.47257 * 186.04916 * 5 4 3 34 34 H 1.09003 * 109.46832 * 306.04469 * 5 4 3 35 35 H 0.96998 * 119.99808 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47329 * 79.77005 * 14 4 3 37 37 H 1.09004 * 109.47341 * 319.76457 * 14 4 3 38 38 H 1.08001 * 119.94625 * 0.02562 * 16 15 14 39 39 H 1.08001 * 119.97005 * 180.02562 * 17 16 15 40 40 H 1.08997 * 109.47453 * 270.23690 * 19 18 17 41 41 H 1.08994 * 109.47372 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.47592 * 59.99420 * 24 23 22 43 43 H 1.09006 * 109.46993 * 299.99828 * 24 23 22 44 44 H 1.07995 * 120.02741 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5038 1.4445 0.1237 5 6 3.9910 2.7494 0.5904 6 6 3.5119 2.9901 1.9987 7 1 2.9057 2.2481 2.4972 8 6 3.8466 4.1581 2.6506 9 7 3.4289 4.3679 3.8799 10 14 4.8944 5.4416 1.7883 11 1 4.0146 6.3917 1.0613 12 1 5.6980 6.1818 2.7941 13 1 5.8036 4.7720 0.8238 14 6 4.1398 1.0684 -1.1459 15 6 5.5518 0.6110 -0.8843 16 6 6.6017 1.5014 -1.0151 17 6 7.8980 1.0851 -0.7753 18 6 8.1470 -0.2209 -0.3994 19 6 9.5598 -0.6726 -0.1326 20 9 10.3113 0.4056 0.3469 21 9 9.5500 -1.6953 0.8219 22 6 7.0961 -1.1173 -0.2726 23 8 7.3390 -2.4037 0.0923 24 6 6.2081 -3.2694 0.2090 25 6 5.7959 -0.6969 -0.5135 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 1.6036 1.9822 0.8405 32 1 1.7535 1.9293 -0.9323 33 1 5.0808 2.7585 0.5708 34 1 3.6092 3.5344 -0.0625 35 1 3.6640 5.1897 4.3383 36 1 4.1548 1.9295 -1.8139 37 1 3.5756 0.2588 -1.6091 38 1 6.4087 2.5239 -1.3043 39 1 8.7163 1.7824 -0.8778 40 1 10.0037 -1.0425 -1.0568 41 1 6.5409 -4.2639 0.5060 42 1 5.6955 -3.3291 -0.7512 43 1 5.5250 -2.8755 0.9616 44 1 4.9755 -1.3918 -0.4115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237271614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:46 Heat of formation + Delta-G solvation = -115.172039 kcal Electronic energy + Delta-G solvation = -26801.466546 eV Core-core repulsion = 22775.779113 eV Total energy + Delta-G solvation = -4025.687433 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.81570 -46.82337 -40.18978 -38.04604 -36.73411 -33.32058 -32.79360 -31.60565 -30.10964 -28.35532 -27.47147 -27.03570 -24.85631 -23.52103 -22.22509 -21.22821 -21.07552 -19.83724 -17.94369 -17.39016 -17.15788 -16.95394 -16.61047 -15.81340 -15.67673 -15.04679 -14.82829 -14.57652 -14.36868 -14.00404 -13.82474 -13.66424 -13.51320 -13.13960 -13.05307 -12.90328 -12.47738 -12.41805 -12.25083 -12.00212 -11.86568 -11.62210 -11.50552 -11.25002 -11.17276 -10.93971 -10.80566 -10.72297 -10.56368 -10.27598 -9.95492 -9.82222 -9.27393 -8.76064 -8.58329 -8.12867 -7.47953 -6.05915 -4.02890 1.23995 1.52941 3.23637 3.26815 3.35569 3.36309 3.65376 3.88871 4.29095 4.41255 4.63545 4.73757 4.88936 4.98592 5.11129 5.11887 5.18618 5.25178 5.27903 5.36369 5.47316 5.50029 5.53423 5.61336 5.70320 5.73174 5.80419 5.96257 6.01612 6.15593 6.18891 6.29527 6.39070 6.41190 6.60910 6.67931 6.74314 6.81141 6.87177 6.96290 7.35356 7.59035 7.85404 7.98969 8.63339 9.02378 9.55840 11.07218 Molecular weight = 313.16amu Principal moments of inertia in cm(-1) A = 0.010275 B = 0.005059 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.415667 B = 5532.850625 C = 7325.838125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.059 3.941 4 N -0.521 5.521 5 C 0.159 3.841 6 C -0.508 4.508 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.899 5.899 10 Si 0.872 3.128 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.082 3.918 15 C 0.000 4.000 16 C -0.147 4.147 17 C -0.051 4.051 18 C -0.214 4.214 19 C 0.325 3.675 20 F -0.204 7.204 21 F -0.192 7.192 22 C 0.156 3.844 23 O -0.308 6.308 24 C 0.026 3.974 25 C -0.186 4.186 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.020 0.980 33 H 0.034 0.966 34 H -0.017 1.017 35 H 0.263 0.737 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.459 -12.654 -13.400 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.069 4.069 4 N -0.244 5.244 5 C 0.033 3.967 6 C -0.546 4.546 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.538 5.538 10 Si 0.699 3.301 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.191 1.191 14 C -0.046 4.046 15 C -0.001 4.001 16 C -0.166 4.166 17 C -0.069 4.069 18 C -0.216 4.216 19 C 0.272 3.728 20 F -0.185 7.185 21 F -0.173 7.173 22 C 0.110 3.890 23 O -0.221 6.221 24 C -0.069 4.069 25 C -0.205 4.205 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.000 1.000 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.786 -12.965 -12.806 19.120 hybrid contribution 0.086 1.476 -0.727 1.648 sum 5.872 -11.489 -13.533 18.698 Atomic orbital electron populations 1.21728 0.96328 1.00888 1.01763 1.21529 0.94727 0.97680 1.01619 1.22115 0.88070 0.95860 1.00814 1.61952 1.04954 1.33171 1.24351 1.20272 0.96214 0.83948 0.96271 1.20997 1.32968 1.04011 0.96642 0.90133 1.24879 0.95694 0.97912 0.94735 1.69886 1.46069 1.26296 1.11578 0.86909 0.81186 0.82148 0.79834 1.20401 1.21103 1.19060 1.21155 0.91136 0.99574 0.92748 1.19771 0.95436 0.92270 0.92626 1.20986 0.91835 0.99828 1.03966 1.20672 0.97598 0.93183 0.95460 1.19660 0.93109 0.95222 1.13628 1.20035 0.88743 0.75328 0.88743 1.92983 1.77960 1.57179 1.90407 1.93023 1.97079 1.59595 1.67589 1.18563 0.92792 0.83821 0.93795 1.86152 1.34742 1.17969 1.83208 1.23083 0.88783 0.93527 1.01510 1.21000 0.94772 0.97724 1.07022 0.93314 0.93273 0.92405 0.93293 0.91277 0.88811 0.96207 0.94797 0.99980 0.92670 0.94299 0.90583 0.85575 0.84848 0.86953 0.88337 0.92736 0.92087 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.12 -1.72 5.98 -26.73 -0.16 -1.88 16 3 C 0.06 1.07 4.79 -3.82 -0.02 1.05 16 4 N -0.52 -10.32 4.34 -237.51 -1.03 -11.36 16 5 C 0.16 3.76 3.61 -4.98 -0.02 3.74 16 6 C -0.51 -14.25 8.79 -34.44 -0.30 -14.56 16 7 H 0.08 2.46 7.55 -52.49 -0.40 2.07 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 10 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 14 C 0.08 1.32 4.94 -4.97 -0.02 1.29 16 15 C 0.00 0.00 5.03 -104.64 -0.53 -0.53 16 16 C -0.15 -2.33 8.40 -39.56 -0.33 -2.66 16 17 C -0.05 -0.75 9.40 -39.61 -0.37 -1.12 16 18 C -0.21 -3.15 5.75 -104.47 -0.60 -3.75 16 19 C 0.33 4.23 5.57 36.01 0.20 4.43 16 20 F -0.20 -2.90 16.49 2.25 0.04 -2.86 16 21 F -0.19 -2.89 15.33 2.25 0.03 -2.85 16 22 C 0.16 2.33 6.58 -39.22 -0.26 2.07 16 23 O -0.31 -4.22 8.43 -19.44 -0.16 -4.38 16 24 C 0.03 0.26 9.81 101.05 0.99 1.25 16 25 C -0.19 -2.78 8.71 -39.43 -0.34 -3.12 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.64 6.89 -51.93 -0.36 0.28 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.97 6.58 -51.93 -0.34 1.63 16 32 H 0.02 0.33 8.00 -51.93 -0.42 -0.08 16 33 H 0.03 0.83 5.39 -51.93 -0.28 0.55 16 34 H -0.02 -0.41 7.55 -51.93 -0.39 -0.80 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.04 0.61 7.90 -51.93 -0.41 0.20 16 37 H 0.08 1.05 6.54 -51.93 -0.34 0.71 16 38 H 0.13 1.93 7.98 -52.49 -0.42 1.51 16 39 H 0.13 1.68 7.61 -52.49 -0.40 1.28 16 40 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 43 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 44 H 0.13 1.76 6.30 -52.49 -0.33 1.43 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -32.00 360.30 -7.66 -39.67 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.58 Total: -0.31 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -1.49 Total: -13.40 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.26 Total: -38.13 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.16 Total: -4.38 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.07 Total: -5.72 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.00 -7.66 -39.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237271614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.506 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds